mRNA_S-ischiensis_contig79.19201.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig79.19201.1
Unique NamemRNA_S-ischiensis_contig79.19201.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig79.19201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig79contigS-ischiensis_contig79:558198..558772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size425
Cds size423
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817248.148686-CDS-S-ischiensis_contig79:558197..5582961622817248.148686-CDS-S-ischiensis_contig79:558197..558296Schizocladia ischiensis KU_0333CDSS-ischiensis_contig79 558198..558296 +
1695740967.8451586-CDS-S-ischiensis_contig79:558197..5582961695740967.8451586-CDS-S-ischiensis_contig79:558197..558296Schizocladia ischiensis KU_0333CDSS-ischiensis_contig79 558198..558296 +
1622817248.1601586-CDS-S-ischiensis_contig79:558448..5587721622817248.1601586-CDS-S-ischiensis_contig79:558448..558772Schizocladia ischiensis KU_0333CDSS-ischiensis_contig79 558449..558772 +
1695740967.862716-CDS-S-ischiensis_contig79:558448..5587721695740967.862716-CDS-S-ischiensis_contig79:558448..558772Schizocladia ischiensis KU_0333CDSS-ischiensis_contig79 558449..558772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig79.19201.1prot_S-ischiensis_contig79.19201.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig79 558198..558772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig79.19201.1

>prot_S-ischiensis_contig79.19201.1 ID=prot_S-ischiensis_contig79.19201.1|Name=mRNA_S-ischiensis_contig79.19201.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=141bp
MGQSGREQTKAGRRGPRRFVDRHLGRAVGDVLEMQLELYEELLSTVTPAT
GDDRDALAASRGFHVWGEGIGGDGDGGGAGIPPDHHAEDNTGEGKAEHAT
ENDAAAMAAAVEEEEEEERATVTATSGHAFSYLLLARLAAA
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mRNA from alignment at S-ischiensis_contig79:558198..558772+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig79.19201.1 ID=mRNA_S-ischiensis_contig79.19201.1|Name=mRNA_S-ischiensis_contig79.19201.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=575bp|location=Sequence derived from alignment at S-ischiensis_contig79:558198..558772+ (Schizocladia ischiensis KU_0333)
ATGGGGCAAAGCGGCAGGGAGCAGACGAAGGCGGGCAGGAGGGGCCCGCG
GAGGTTTGTCGACCGGCACCTTGGGCGGGCGGTTGGGGATGTCCTCGAGG
TGGGGAGGCGTTCTTCCAAGTGCCCTGCTCTCCCTTCTGGTGACGATTGA
CACTTGTTGACGTACATGCTTGTCTACAAGTACAGTAGATGTGAATGTTA
GAGGCGATTTCCATTCATCCCATGTCTCCCCCCCCCCCTGCAAACATGCA
GATGCAACTGGAGCTGTACGAGGAACTTCTTTCCACCGTCACCCCCGCCA
CGGGAGACGACCGGGACGCCCTCGCCGCCTCCCGCGGGTTTCACGTGTGG
GGCGAAGGCATTGGCGGCGACGGTGACGGCGGCGGCGCCGGCATCCCACC
GGATCACCACGCCGAGGACAACACAGGGGAGGGGAAGGCTGAGCACGCCA
CCGAGAACGACGCGGCGGCGATGGCGGCGGCGGTGGAGGAGGAGGAGGAG
GAGGAGCGAGCGACAGTCACGGCCACATCCGGCCATGCCTTCTCATACCT
CCTCCTGGCGCGCCTCGCCGCCGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig79:558198..558772+

>mRNA_S-ischiensis_contig79.19201.1 ID=mRNA_S-ischiensis_contig79.19201.1|Name=mRNA_S-ischiensis_contig79.19201.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=846bp|location=Sequence derived from alignment at S-ischiensis_contig79:558198..558772+ (Schizocladia ischiensis KU_0333)
ATGGGGCAAAGCGGCAGGGAGCAGACGAAGGCGGGCAGGAGGGGCCCGCG
GAGGTTTGTCGACCGGCACCTTGGGCGGGCGGTTGGGGATGTCCTCGAGA
TGGGGCAAAGCGGCAGGGAGCAGACGAAGGCGGGCAGGAGGGGCCCGCGG
AGGTTTGTCGACCGGCACCTTGGGCGGGCGGTTGGGGATGTCCTCGAGAT
GCAACTGGAGCTGTACGAGGAACTTCTTTCCACCGTCACCCCCGCCACGG
GAGACGACCGGGACGCCCTCGCCGCCTCCCGCGGGTTTCACGTGTGGGGC
GAAGGCATTGGCGGCGACGGTGACGGCGGCGGCGCCGGCATCCCACCGGA
TCACCACGCCGAGGACAACACAGGGGAGGGGAAGGCTGAGCACGCCACCG
AGAACGACGCGGCGGCGATGGCGGCGGCGGTGGAGGAGGAGGAGGAGGAG
GAGCGAGCGACAGTCACGGCCACATCCGGCCATGCCTTCTCATACCTCCT
CCTGGCGCGCCTCGCCGCCGCCATGCAACTGGAGCTGTACGAGGAACTTC
TTTCCACCGTCACCCCCGCCACGGGAGACGACCGGGACGCCCTCGCCGCC
TCCCGCGGGTTTCACGTGTGGGGCGAAGGCATTGGCGGCGACGGTGACGG
CGGCGGCGCCGGCATCCCACCGGATCACCACGCCGAGGACAACACAGGGG
AGGGGAAGGCTGAGCACGCCACCGAGAACGACGCGGCGGCGATGGCGGCG
GCGGTGGAGGAGGAGGAGGAGGAGGAGCGAGCGACAGTCACGGCCACATC
CGGCCATGCCTTCTCATACCTCCTCCTGGCGCGCCTCGCCGCCGCC
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