mRNA_S-ischiensis_contig79.19192.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig79.19192.1
Unique NamemRNA_S-ischiensis_contig79.19192.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig79.19192.1 vs. uniprot
Match: D7G1Y8_ECTSI (Similar to mitochondrial import inner membrane translocase,TIM17/22/23-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y8_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.180e-27
Identity = 77/191 (40.31%), Postives = 108/191 (56.54%), Query Frame = 2
Query:  314 PQTLMEALALLRGGGAVKPNYWEVGASTAAAFVGGSWLGWRGERSRALTVPVHERGAVLLRGALGRGFKFAGFAVIYTGSVAIMETLHQERHFTGAAVGGGLAGSTFGAARGLRSAAGGLFVGTWLGTTFGLFQSLLASQVGMLERRERERESEERCALAESDKEVGKV-----IAGLDAALARWPERPAE 871
            P+T+ EA+A+++G  AVKP+Y     + +AAF GG   GW    + A   P H+R  V +R    RG +FA FA+I+ GS A+ME L +++ F G  VGG LAG  +G      +A  GLF G WLG  FGLF++ +AS    L  + R  E +ER A  E D  +G+      IAG+DA +  WP   A+
Sbjct:  116 PETMEEAMAVIKGERAVKPDYGRAVGTVSAAFAGGCAHGWWHGAALAAKYPPHQRSIVRVRAGARRGLRFATFALIFEGSSAVMEALRRKKDFVGGTVGGALAGMAYGXXXXXAAARSGLFYGVWLGGVFGLFRNHVAS----LREQARLAEEDERLAQEERDA-IGETALRRSIAGIDAQVRTWPTAAAD 301          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig79.19192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1Y8_ECTSI1.180e-2740.31Similar to mitochondrial import inner membrane tra... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig79contigS-ischiensis_contig79:440808..448718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1283
Cds size894
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817252.7354352-UTR-S-ischiensis_contig79:440807..4408381622817252.7354352-UTR-S-ischiensis_contig79:440807..440838Schizocladia ischiensis KU_0333UTRS-ischiensis_contig79 440808..440838 +
1695740971.445478-UTR-S-ischiensis_contig79:440807..4408381695740971.445478-UTR-S-ischiensis_contig79:440807..440838Schizocladia ischiensis KU_0333UTRS-ischiensis_contig79 440808..440838 +
1622817252.809964-UTR-S-ischiensis_contig79:448360..4487181622817252.809964-UTR-S-ischiensis_contig79:448360..448718Schizocladia ischiensis KU_0333UTRS-ischiensis_contig79 448361..448718 +
1695740971.51558-UTR-S-ischiensis_contig79:448360..4487181695740971.51558-UTR-S-ischiensis_contig79:448360..448718Schizocladia ischiensis KU_0333UTRS-ischiensis_contig79 448361..448718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817252.7485714-CDS-S-ischiensis_contig79:440838..4412101622817252.7485714-CDS-S-ischiensis_contig79:440838..441210Schizocladia ischiensis KU_0333CDSS-ischiensis_contig79 440839..441210 +
1695740971.4598558-CDS-S-ischiensis_contig79:440838..4412101695740971.4598558-CDS-S-ischiensis_contig79:440838..441210Schizocladia ischiensis KU_0333CDSS-ischiensis_contig79 440839..441210 +
1622817252.7627757-CDS-S-ischiensis_contig79:441541..4416871622817252.7627757-CDS-S-ischiensis_contig79:441541..441687Schizocladia ischiensis KU_0333CDSS-ischiensis_contig79 441542..441687 +
1695740971.4726827-CDS-S-ischiensis_contig79:441541..4416871695740971.4726827-CDS-S-ischiensis_contig79:441541..441687Schizocladia ischiensis KU_0333CDSS-ischiensis_contig79 441542..441687 +
1622817252.7762187-CDS-S-ischiensis_contig79:441951..4420461622817252.7762187-CDS-S-ischiensis_contig79:441951..442046Schizocladia ischiensis KU_0333CDSS-ischiensis_contig79 441952..442046 +
1695740971.4842975-CDS-S-ischiensis_contig79:441951..4420461695740971.4842975-CDS-S-ischiensis_contig79:441951..442046Schizocladia ischiensis KU_0333CDSS-ischiensis_contig79 441952..442046 +
1622817252.7871566-CDS-S-ischiensis_contig79:443837..4439711622817252.7871566-CDS-S-ischiensis_contig79:443837..443971Schizocladia ischiensis KU_0333CDSS-ischiensis_contig79 443838..443971 +
1695740971.495149-CDS-S-ischiensis_contig79:443837..4439711695740971.495149-CDS-S-ischiensis_contig79:443837..443971Schizocladia ischiensis KU_0333CDSS-ischiensis_contig79 443838..443971 +
1622817252.7993586-CDS-S-ischiensis_contig79:448213..4483601622817252.7993586-CDS-S-ischiensis_contig79:448213..448360Schizocladia ischiensis KU_0333CDSS-ischiensis_contig79 448214..448360 +
1695740971.505546-CDS-S-ischiensis_contig79:448213..4483601695740971.505546-CDS-S-ischiensis_contig79:448213..448360Schizocladia ischiensis KU_0333CDSS-ischiensis_contig79 448214..448360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig79.19192.1prot_S-ischiensis_contig79.19192.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig79 440839..448360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig79.19192.1

>prot_S-ischiensis_contig79.19192.1 ID=prot_S-ischiensis_contig79.19192.1|Name=mRNA_S-ischiensis_contig79.19192.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=298bp
MELLRGLGLWRRPLEDTSRNAAAPDPDRPPDGEAQVLQGESAAAAAVAMA
EGPSAVDASARAPGGRAGILADGELDTASCGDGQEVNSPGASSPPQTLME
ALALLRGGGAVKPNYWEVGASTAAAFVGGSWLGWRGERSRALTVPVHERG
AVLLRGALGRGFKFAGFAVIYTGSVAIMETLHQERHFTGAAVGGGLAGST
FGAARGLRSAAGGLFVGTWLGTTFGLFQSLLASQVGMLERRERERESEER
CALAESDKEVGKVIAGLDAALARWPERPAEQQVQRQRPQQVEGGAPP*
back to top

mRNA from alignment at S-ischiensis_contig79:440808..448718+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig79.19192.1 ID=mRNA_S-ischiensis_contig79.19192.1|Name=mRNA_S-ischiensis_contig79.19192.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=7911bp|location=Sequence derived from alignment at S-ischiensis_contig79:440808..448718+ (Schizocladia ischiensis KU_0333)
CACGGGCGAAGTGAGGCCCAGTGGAGCGGGGATGGAGCTTCTTAGAGGGC TAGGCCTCTGGCGGCGACCCCTTGAAGACACTTCAAGAAATGCCGCAGCG CCGGACCCAGATAGACCGCCCGATGGTGAGGCGCAAGTGCTGCAGGGGGA GTCGGCTGCAGCTGCAGCCGTCGCGATGGCCGAAGGACCCTCGGCTGTCG ACGCAAGTGCCCGTGCGCCTGGAGGGCGGGCGGGAATACTTGCTGATGGG GAACTGGACACTGCTTCATGTGGAGATGGGCAAGAGGTGAACTCTCCTGG GGCGTCTAGCCCGCCACAGACCCTCATGGAGGCACTGGCACTACTTCGGG GGGGAGGAGCCGTCAAGCCCAACTATTGGGAGGTTGGGGCATCGACCGCC GCGGTGAGACTTGTGCCACGCGACCACGCGGCTGTGCCTTCGTATGTAAA CTCTCGCCAATGTGTGCGGCCAGCTTCGTTATCGTCGCTCGTCTAGTCAC TCGGTTGTGCAGCTGCTCCCTCTAGCTGTCTTTGGTTGGTTCCCCATACA CGTGTACCTGTCCCGACCTCTTGCTGCACTACAAGGCACGTTTCATCTCT GTACGGACCATGGATCCCGCATTGCCATCTCTCGGGACCTCTTGCTGCAC TATAAGGCATATTTCATCTGTACGGGCCATTGATCCCGCATTGCCATCTC GACAGTCACGCCTTGTTCGTCCCGTCAATGGCAGGCGTTTGTGGGGGGTT CCTGGTTGGGCTGGCGTGGCGAGAGGTCGCGGGCTCTGACTGTGCCCGTG CATGAGAGGGGGGCTGTGCTGCTTCGAGGGGCGCTGGGGAGGGGTTTCAA GTTCGCAGGTTTTGCTGTCATATACACAGGGTGCGTGTGTACATGTGTTC GCGTGTCTTTCTCCGTCCCTCCCTCCCCACCTCCCTCCCCACCTCCCTCC CTCCCTCCCTCCCTGCTTCCCTTCTCCCGCCCTGCCTCCCCCCTTCTCTC TCTCTCTCTCTCTCCTCCCCCCCCCAAGCCCCACCTCACCTCGCCCCCTC TTCCCTCCTTCCCTCCCCCCCTCTCTGTTGCGAGCTCGCTCACTTCTTCA CGACTGCACAAGCTACTTCACTCCATGTCTCCTGTATTGTGCAGGTCTGT CGCTATCATGGAGACGCTGCATCAGGAACGGCATTTCACCGGGGCCGCTG TTGGCGGGGGTCTCGCCGGGAGCACCTTTGGCGCAGCTCGTGAGTCGGGG CGCCTCGTGCCCATAGCGTATGTTGATATTCGCTGTAGGCTGTGCGGTGC TGGCTTCGCGCGGCAAAGACTGCGCCGTTAACTGTCTCGCCCTCGTCTCG CCGGCAGTTCAGTTCGTTTTGCTAGGAGTGCAGACTGTACATGGAGGGAA ATGATTGTTCGACAAGAGTGGCAAGCAGCTGCCGTACATACTCCACTTGT ACGTGCTCGTGTACATAGCCGTAGAGCATCGTACTTCAATGCCGCTTTGT TGGGAAAATGTGCGGGGCGTGCGCCATGCTGCCGGGACGCTGCTGCCAAC CTCTGCACTGCCGCTACAGTACGTACTCGAAGACAGTACAATCATACTTG AAGTACAGAGACATGAGTACACACAATCGTACTTGAAGTACGAGCACTAA CGTGCTTGGGCCCGTGCATTTCCTGTACTTGGAGTACTTCCAAGTACGGT ACTCTACTTACAGTTTAGCGTCCCGCCGTCCTCAAAGGGTTATAACTACG GCCGTTCTTTACGACGCCAAAGTCGGTGCTTTTGTTTGCCGAAAAAGCGC CGAACAGCGGCGGTTGATTTTTTTAATTATTTTTTTGCCTCCGCCGCGGC ATTTGCCTTGCCGGCGAGTGACCCGCCTCCCAGGGCGGGCCGCTCTTCGC CGACAAGAAGAACGCCTTCTTGAGAGCTCCATTTTTGGCACCTGCTGCGG CCAACAAAGCGCCAGTTTTTTTGCCTTGTGATTCATGTACGTCGAACTAA ATTGCAATGAGGTACAATCGCACGTGTGTGCGATTGACTGACGATGACTG ACTGACAATCGCACACACGGCCGTGTCCGAATACAACAACACACAAGTCA CTGGATCTGTAAACGTGTTTACTTTCGGAATATATATATTGATCCTAAGT GCGGCACTGCGCACACCAAATGTCTTGGCGACTGTGCAGCAAACCCGACA CGCTCCGTCCCGGCTTGGTAGGTACCGTAATCGACGCAGAGATTTTGCCT TTTGCCCCCACGGGCCAATTTTCGGGGAAATATTTCTAGCCGGGAAGGTC CTGAATTGTCCTGAAAATTCCCAGAAAGGTTCCCCCAGGTCCTGAGGGAG ATTTTCCGACTTTGCCTGCGCGAATCGGACCAGTATTCGCCGAGAAAAGT TCTCCCTAAAATTGGCATGGGGGGGCAAGATCTCTCCGACGATTACGGTA TTGTAGGTAGGGAGGCGAGGGCCGATGGCCTGAAGCGCGGGGGGTATGGC CAGCACGCGGCGGAGGAGACGATGGGATGTGCGTGCATCACGGTGGCCCA AGTGCTAGAGTAGTTCATATCAATTGTAACGAGGTGCAATCGCACGTGTG CGAGATTGACTGCTCTCGTAGTAGTTGTTGTCCCATTTAAGAATTGAGTG TTCTTATATTAGTGATTATCTAGTGAAGGAACTAAGAACAAGGAGGGGGG GGGTGAGTGCTAGGACTACGCGGATGGTGTGGAGGAGACGATGTATGTGA ATCACCAGTACTTCCAAGTATATGTACTCACCTACTCACCTGGTGCTTAC CGTAGTCCCGAGACGATTGACCGCGCGCCTCGGTCGAGACGGAGCAGGAA CATGCAATATACAAAGCATATGTACTAGCCCTGCTCCGTCTCGACCGAGG CGCGTGGTCAATGGTCTCGGGACTATGCCAAGCACAACGCGAGTACTTGG AAGTATGTAGTGTACTTGTGCGTCCAGCACTGTCACGTTGTCGCGCAACG TGTGTGTTTTACGCCGACCCGTTCCCTCAGGTGGGTTGCGATCCGCCGCC GGGGGTCTGTTTGTGGGCACCTGGCTGGGGACGACCTTTGGGCTGTTCCA GTCTCTGCTGGCGTCTCAAGTGGGCATGCTGGAGCGCAGGGAGCGGGAGC GGGAGAGCGAAGAGGTGATTCATATGAATTGTAACGAGGTACACTCGCAC GTGTGTGAGATTGAGTGTTCTCGTACTAGTGGCTATCCCATATAAGGATT GAGTGTTCTTATACTACGCACTCGAAGTAGTATTAGACATTTTCACGTCA AGGAACCAAGAATAAGGCGGGTGGTGGGCGGAGCAAAGAGGTGAGTGATT GATCTTTGGCGTTCCTTTGACCAGTAGAACGAGTTGCAGTGTTGACATGA TAGTAGCGACGCAGGGCGAGATGTGTGTCGCGGCACCAAAGACCTCAACC GTGGCCCTTCATATGCTCTCCAGGGAAGGGGCGGGTAGGGGAGGGAGGGA GGCAGGAGGAGGAGGAGGAGGAGAAGGAGAGAGGGCACGGGGGAGTTACA GTAGTGAAGGTTCAGTTTGTATACGACTTGCAAGCCTACGTAGGCCTTTA TTTTGTGGGGAATCAGCGTACCGCCATGCACAAGTACGAGTGCTTATGCT TGATGGCTGACGAGCCATGAAGTGCTCGCCGCAGTAGCAGTCACCCGAGC AACTGCTGCAGTCCTCTACTGTAAGGGGCGCTGAGGCATTCTCTGCAGGG GGGGACTTTACATGAAAGCGGTGGCCACCGGTGGGCAGGTCTCGGGAACC ACTTTGAACCGCAGCACGAAACTGTACCACCATGCCATGTCCACCAGGGT AACACCAAGACGACGTGTAAATTTGCACGCGCCAATTTGCATGTTTTTCT CGAGCTAGAGCTGCTCGGTCTCGACCGAGCGCATGGTCAATGGTCTCGGG ACTACGGCAAGCACCACGTGGGTACATATATATATAGAGAGAGAGCTGGG CACGAACCGGTGGCCACGGGTTGCATTGTAAGGAACCGGGCGGTTTGCAC CCCCCCCTCGCGTAGAGCGCCTCACTGGGCCGCCGTTAATGACACTTCAC TACAGTGAACGACGGTGTTGGGCATTCAGTGGGACTTAACGCACCATCAT GCTCAAGTACTGCAGTCACTGAGTAACTGCAGTCCTCTGCGGTAAGGGGT GCTGTGTTGTACTGCAGTGAACGACGTTTCGCTGAAGCCAACTGTAGACT TTGGCGAGGCAACAGCATACCAACATGCTCCACGTACTTGCTATGCCACT CTGGTCCTCCACTACTGTAGTACCTCGCTACAGTACGTAGTAGTCAATGA AGATGCTTCACTGAAGCCGACTGTATGCTTTGCCAAGGCAACGGCGTACC GTCATGCTCCAAGTGCTTGCTATAGTAGTACTAGTACTCGAGTACGACTC TACCACAGTAGCAGTCCTCCACTGTAAGGGGTGCTGTACTGTACTGCACT GTACTAAGTAGCCAATGACAATGCTTCACTGAAGCCAACGGTAGGGCTCC GTGAGCAGCAGTGTGCCATCGCCAGCTATAGTTGTCACGGAAAGTCGTTC TCTAACGGTTACAGCCCTGCACAGTACAGTAGGATCCTACTGTAGCAAGC GCAGTGAGCAGTTGGGTGCGGCCCACTACTTCAAGTAAGTTTGGGCAAGG TAAAGTACGAAGTAGGTAGGTACTGTAGTTGCGCTTATTCGAGTGTGGCC TTGCTACAGCAACAGCGCAATGTATGCTTGTCCTCTGCTTCCAAGTGCGA GTAGAGTAGTCTGCTCTACAATGTCGCGCGGTCAATGGTCTCGGGACGAT GGCAAGCACTTTTAGGGGCGAGTGCACGTGCAGTAGGCTCTATACTACAG TACATAGTACTACGTAGTACATGCAGCACTCACGTCGACTTAAGCTTGGT TGCGATGAGTCCCAAGACGGTTTGACCGCGCGCCGCCGACCGAGACAAAG GCGCCCCAATACTGAGTGCCTCCGGACGTTCTCGGCACTTCTCTGGGTGC AACCCCTTGTGTGACGATCGGAGGCGCTATTGGCGGCACTTGCGCATTTA TGTTGATGCACCAAGCGTACAAGTTGCGGGGCTTTGGCTTGGCAACAGTT TGCTGTACCGTCGTTGCTGAAGGGCGGTACCTCCAAGCACAACCACAGTA CCCCCCCCCCCTCCGCCCTCCGCCTTGTTTTTAGCTCCTTGATGTCATAA TCACTACTAATATACGAACATTCAACTCTTGCATGAAATAACTACTACAG TAGTACGAGAACAGTCAATCGCACACACGTGCGATTGTACCTCGTAACAA TTTATATGAATCACCGCACTACTGCAGTAGAGTACATATGTGTATTCATG TCTAACAGAGCTCGCCGTGGTCCCGAGACCATTTACCCTGCCCCCCGACC AAGACGGGGGCACGCCCTGCCATGAGAAGCTCGAGTACGCGGTCAATGGC CGTGCCCTACGGGAGGCTGTCGGCAACGCACGCAACGTTCCGCCGCCAGG TTAGCCAATGAGTACATACGCGTGTATATATACTACTATGTACTACGAGA GGCATGACGCGAGTACTACGCGTGCAAGCATGTACTTCGAAGTATTTGCT GCCCGTGCACTGAAGTCCATGGTCCCCGGACGGCGCAAGCGCCGTGTGAG TACTAGTACAGCACATTTACACATCGCGCCACTTGTGGGCCACGGGGCCT TGATGAGGGATGGCGTACCGTCCTAGAGTAGGTGCAGTATGTATACTTGG CGCATAGTCATACAATGGTTATGTCCCCTGGACGATATATTGGCGGTGCA CTAAAATCTGCTGTACATGCCGCGAATGGCCCAGGGGGTACCTCGCGGGG GCTGCCCGGCGGTCCATCAAGTTAGCAGAGTGCTTGAAAGTACTTTTACA TGTGCTATATATATGACGGGGCATTGTCCGGCGACCTACAGTAGCGGTCG GGTTCAATCGTCCTGTTCTTTCCTCTCGTGACCGTTAGGGTGCCCTTGTG CCCAAGAGCAACTCTGCCAAGAGACTCGCAAGTGCGCGCTGATGGCCACG CTTTGTCGCAGTCCAGTCTAGCGAGGCCCCGGCGCTTTGTCATAGTCTAG TCTAGCGAGCGGCACCTCGTCCGGCTCGCCGCCGCCGAGGTATCATGGCA TGCCGGGCTTGACTTGTAGTGCGCAGCCTGGCCGGTGCAAATCCGGCATG CTCCGAGACCGTGTCCTGCGTGGGAGGGAGGTGGTGCCTACAATGGCGTC GGGGGGCTTGGTGCGATTGGAGGGCGTGCGCACAAAATGACCTGACACGT ACCGTGCCCCCGCTATTGGTTTGGTTTATACAGTAGTCGGATTCTATTTG CAATTGCCCGCGCCTTTCAGCATGAAAGTACGCCAGCGCGTCCCAGGCCC CTGTCCCAAAGCCCCGGCCTCGCCAGAAGGGTGGACCCTTCTTCAACTCG CTAAGTGTGATGTGTTGTGATGTGATGTGCACTCTGAATTACTGTAGTTT TGCATCACATCACATCAGATCACATAAAACTGGGGACCTCACCAGAAGAG TTAGCCCTTCTTCAACTCGTTCAGTGTGATGTGATGTGATGTGCACTCTG AATTACTGTAGTTTTGCATCACATCACATCACATCACACAAAACTGGGGA CCTCACCAGAAATGCTAGCCCTTCTTCCACTCGCAGCGCAGGAGCAAACC TTAAGAAACCAGGGGCAGCGCGGGGGGTCTCTTGTGCCACGCAGCGGGAC AGAACGGCGTGCTTCCTGCATGACGTGACGTGATGTGATGTGATGTGATG CGAGGTCAAACTTTTATGCAGTTTTGAGTTTGACACTAATTTACGTACTA GTTTTGAGTTTCAAGCTACTTTACGCAGTTTTGAGTGCGAATCACATCAT GTACTTCAAAGTACAACCTCACATCAACGTCAACGACACGTCTCTCGAGC CACATCGCGGGGCAGAACGGCTTACAGTACCTGTGAGGCGCGGCGGAGCT ACACCGCCAGCTACAAGGCGCTCACTGTTACTAGTACGTACGCAGCAGTA ACCACACAGCTAGCACGCGCGGACCACCCAAGCAGGGGAGCTGCTGTAGC CCAACATTGCCTGCACATTTCGTCGACGTTTGGGCGAGGCTGTCTGACTC ACGCACGCACGCCCCGCCCTTGCCCGCTCTGATGGTCCACCCCATGGCAT GTGGGCTTCCCCGTGGCGGGCCTCCTCAACGGCTGTGGTCACAACCGTGC GGCGTGACCGGCCCCGGCGGTCACGACGACGACGGCGTTCGCACACTTTC AACCCAAATGTGGCGGCCGTGGTGGACTATGGGGGCGGACGTGCGCTGTG GCCCAGCGCTGTGCCCTGGCGGAGAGTGATAAGGAGGTGGGCAAAGTCAT CGCTGGCCTGGACGCGGCGCTGGCGCGTTGGCCGGAGCGACCGGCGGAGC AGCAGGTGCAGCGGCAGCGCCCGCAGCAGGTTGAGGGAGGCGCACCGCCG TAGAAATAGAGCTGCAGTACTGTAGTTGCAGGAGTAGCGGTGGCGGCGGC GGCGGTGGCAGCGGCAGTGGCGGCTGCAGCAGGATCAGCAGCATTAGCCG TAGCAGTGCTCAGCGGTGGGAGGGGGACTGTGAGCACAGTGACCGAGTGC TTCCGCTGGCGCCCAGTCCTCTAGACCCCGCTTCACGGGTACTCTGTACA CTCATTTCAGGGGTACTCTGTACACTCAAGTATGCCAAAGGACATGAAGA GTGAGGTTCTACGCGAGGGGGGGGGGCAAAGCACCCGGTTCCTTGCGTGC CACCGCTTCGGCTTTCCAGCTCTAACTCGAGAACAAATGCAAATTGGCGC GTGAAAAACTG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig79:440808..448718+

>mRNA_S-ischiensis_contig79.19192.1 ID=mRNA_S-ischiensis_contig79.19192.1|Name=mRNA_S-ischiensis_contig79.19192.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1788bp|location=Sequence derived from alignment at S-ischiensis_contig79:440808..448718+ (Schizocladia ischiensis KU_0333)
ATGGAGCTTCTTAGAGGGCTAGGCCTCTGGCGGCGACCCCTTGAAGACAC
TTCAAGAAATGCCGCAGCGCCGGACCCAGATAGACCGCCCGATGGTGAGG
CGCAAGTGCTGCAGGGGGAGTCGGCTGCAGCTGCAGCCGTCGCGATGGCC
GAAGGACCCTCGGCTGTCGACGCAAGTGCCCGTGCGCCTGGAGGGCGGGC
GGGAATACTTGCTGATGGGGAACTGGACACTGCTTCATGTGGAGATGGGC
AAGAGGTGAACTCTCCTGGGGCGTCTAGCCCGCCACAGACCCTCATGGAG
GCACTGGCACTACTTCGGGGGGGAGGAGCCGTCAAGCCCAACTATTGGGA
GGTTGGGGCATCGACCGCCGCGATGGAGCTTCTTAGAGGGCTAGGCCTCT
GGCGGCGACCCCTTGAAGACACTTCAAGAAATGCCGCAGCGCCGGACCCA
GATAGACCGCCCGATGGTGAGGCGCAAGTGCTGCAGGGGGAGTCGGCTGC
AGCTGCAGCCGTCGCGATGGCCGAAGGACCCTCGGCTGTCGACGCAAGTG
CCCGTGCGCCTGGAGGGCGGGCGGGAATACTTGCTGATGGGGAACTGGAC
ACTGCTTCATGTGGAGATGGGCAAGAGGTGAACTCTCCTGGGGCGTCTAG
CCCGCCACAGACCCTCATGGAGGCACTGGCACTACTTCGGGGGGGAGGAG
CCGTCAAGCCCAACTATTGGGAGGTTGGGGCATCGACCGCCGCGGCGTTT
GTGGGGGGTTCCTGGTTGGGCTGGCGTGGCGAGAGGTCGCGGGCTCTGAC
TGTGCCCGTGCATGAGAGGGGGGCTGTGCTGCTTCGAGGGGCGCTGGGGA
GGGGTTTCAAGTTCGCAGGTTTTGCTGTCATATACACAGGGCGTTTGTGG
GGGGTTCCTGGTTGGGCTGGCGTGGCGAGAGGTCGCGGGCTCTGACTGTG
CCCGTGCATGAGAGGGGGGCTGTGCTGCTTCGAGGGGCGCTGGGGAGGGG
TTTCAAGTTCGCAGGTTTTGCTGTCATATACACAGGGTCTGTCGCTATCA
TGGAGACGCTGCATCAGGAACGGCATTTCACCGGGGCCGCTGTTGGCGGG
GGTCTCGCCGGGAGCACCTTTGGCGCAGCTCGTCTGTCGCTATCATGGAG
ACGCTGCATCAGGAACGGCATTTCACCGGGGCCGCTGTTGGCGGGGGTCT
CGCCGGGAGCACCTTTGGCGCAGCTCGTGGGTTGCGATCCGCCGCCGGGG
GTCTGTTTGTGGGCACCTGGCTGGGGACGACCTTTGGGCTGTTCCAGTCT
CTGCTGGCGTCTCAAGTGGGCATGCTGGAGCGCAGGGAGCGGGAGCGGGA
GAGCGAAGAGGTGGGTTGCGATCCGCCGCCGGGGGTCTGTTTGTGGGCAC
CTGGCTGGGGACGACCTTTGGGCTGTTCCAGTCTCTGCTGGCGTCTCAAG
TGGGCATGCTGGAGCGCAGGGAGCGGGAGCGGGAGAGCGAAGAGCGCTGT
GCCCTGGCGGAGAGTGATAAGGAGGTGGGCAAAGTCATCGCTGGCCTGGA
CGCGGCGCTGGCGCGTTGGCCGGAGCGACCGGCGGAGCAGCAGGTGCAGC
GGCAGCGCCCGCAGCAGGTTGAGGGAGGCGCACCGCCGTAGCGCTGTGCC
CTGGCGGAGAGTGATAAGGAGGTGGGCAAAGTCATCGCTGGCCTGGACGC
GGCGCTGGCGCGTTGGCCGGAGCGACCGGCGGAGCAGCAGGTGCAGCGGC
AGCGCCCGCAGCAGGTTGAGGGAGGCGCACCGCCGTAG
back to top