mRNA_S-ischiensis_contig79.19167.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig79.19167.1
Unique NamemRNA_S-ischiensis_contig79.19167.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig79.19167.1 vs. uniprot
Match: D7FJ06_ECTSI (Epimerase/dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ06_ECTSI)

HSP 1 Score: 342 bits (876), Expect = 5.000e-116
Identity = 178/244 (72.95%), Postives = 209/244 (85.66%), Query Frame = 1
Query:    4 GHARSRLGHASAGDVRMAYGKVFVAGGSKGVGRAIVDKLVEQGSEVVALVRREDAKAELEQLPGVTAVLADALEIKAVEGALDGCDAAITTLGGAPEGDETQRVDYAGNRNVIESAGILGVTRVVLVTSVGCGSSREAISDDVYQVLKKALDAKTKAENMLIKYYTNSDWTIIRPGGLISEPPTGKSVLTKDTTAAGVIHRGDVADLVVKVLNSDATIKGIFTAVDPTIKNQYSSEREVAAFQL 735
            G ARS +   S G +RMAYGKVFVAGG+KGVGRA++DKLV+QGSEVVALVRREDAK ELE + GV+AV+ DAL++K VE  LDGCDAAITTLGGAPEGDE++RVDYAGNRNVIESAGILG+TRVV+VTSVGCGSSREAISD VYQVL+KAL AKT AENML+KYYTNS+WTIIRPGGL S+  TG ++LT+DT AAGVI+R DVADL V+ LNS +T++ I TAVDP +++ Y S  + AAF L
Sbjct:   31 GTARSTISGQSTG-LRMAYGKVFVAGGAKGVGRAVIDKLVDQGSEVVALVRREDAKDELEAIKGVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALNSPSTVRKILTAVDPAVQSSYDSAEKPAAFAL 273          
BLAST of mRNA_S-ischiensis_contig79.19167.1 vs. uniprot
Match: A0A835Z825_9STRA (Epimerase/dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z825_9STRA)

HSP 1 Score: 281 bits (719), Expect = 2.470e-92
Identity = 150/234 (64.10%), Postives = 181/234 (77.35%), Query Frame = 1
Query:   34 SAGDVRMAYGKVFVAGGSKGVGRAIVDKLVEQGSEVVALVRREDAKAELEQLPGVTAVLADALEIKAVEGALDGCDAAITTLGGAPEGDETQRVDYAGNRNVIESAGILGVTRVVLVTSVGCGSSREAISDDVYQVLKKALDAKTKAENMLIKYYTNSDWTIIRPGGLISEPPTGKSVLTKDTTAAGVIHRGDVADLVVKVLNSDATIKGIFTAVDPTIKNQYSSEREVAAFQL 735
            S+  + MAY KVFVAGGS GVGR +V++LV +G +VVA+VRREDA  EL  + GVTAV+ DAL++K VEGALDGCDAAITTLGG+       RVDY GNRNVIESAGILGVTRV+LVTSVGCG SR AISD VY  L+KAL AKTKAE ML KYYTN+ WTIIRPGGL +   TGK++LT++ T AG+I R DVAD+VV+ L++D T K +FTAVDP+I + +    +  AF L
Sbjct:   32 SSSSLSMAYNKVFVAGGSSGVGREVVNQLVSKGKQVVAIVRREDALEELNAIEGVTAVMVDALDLKGVEGALDGCDAAITTLGGS---SGENRVDYEGNRNVIESAGILGVTRVILVTSVGCGDSRGAISDQVYTSLEKALVAKTKAEKMLQKYYTNAFWTIIRPGGLQTAEGTGKAILTENKTIAGIIRRADVADVVVRALDNDGTHKKVFTAVDPSIPSSFGDASKAEAFPL 262          
BLAST of mRNA_S-ischiensis_contig79.19167.1 vs. uniprot
Match: B7FVE3_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FVE3_PHATC)

HSP 1 Score: 279 bits (713), Expect = 2.380e-91
Identity = 149/227 (65.64%), Postives = 177/227 (77.97%), Query Frame = 1
Query:   55 AYGKVFVAGGSKGVGRAIVDKLVEQGSEVVALVRREDAKAELEQLPGVTAVLADALEIKAVEGALDGCDAAITTLGGAPEGDETQRVDYAGNRNVIESAGILGVTRVVLVTSVGCGSSREAISDDVYQVLKKALDAKTKAENMLIKYYTNSDWTIIRPGGLISEPPTGKSVLTKDTTAAGVIHRGDVADLVVKVLNSDATIKGIFTAVDPTIKNQYSSEREVAAFQL 735
            AY KVFVAGG++GVGR IVD+L+ QGSEVVALVR EDA  EL  + GVTA+  DA E KAVE A+DGCDAAITTLGGA   D  +RVDY GN NVIESAGILGVTRV+LVTSVGCGSS+EA   +V++ LK+ L AK KAEN+LIKYYTN +WTIIRPGGL SEP TGK++LT+DT A G IHR DVA L +K LNS  T + + TA+DP+I +  S  ++V AF +
Sbjct:   42 AYKKVFVAGGTRGVGRCIVDQLLGQGSEVVALVRSEDALKELNAIEGVTAIRGDAFEQKAVENAMDGCDAAITTLGGATS-DGGKRVDYDGNSNVIESAGILGVTRVILVTSVGCGSSKEAAPPNVFEALKEVLTAKEKAENVLIKYYTNMNWTIIRPGGLKSEPATGKAILTEDTRAIGTIHREDVAALAIKALNSSNTERKVLTAIDPSIDSAVSDGKQVEAFAV 267          
BLAST of mRNA_S-ischiensis_contig79.19167.1 vs. uniprot
Match: B8C036_THAPS (NAD(P)-bd_dom domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C036_THAPS)

HSP 1 Score: 273 bits (698), Expect = 6.040e-89
Identity = 145/219 (66.21%), Postives = 172/219 (78.54%), Query Frame = 1
Query:   58 YGKVFVAGGSKGVGRAIVDKLVEQGSEVVALVRREDAKAELEQLPGVTAVLADALEIKAVEGALDGCDAAITTLGGAPEGDETQR-VDYAGNRNVIESAGILGVTRVVLVTSVGCGSSREAISDDVYQVLKKALDAKTKAENMLIKYYTNSDWTIIRPGGLISEPPTGKSVLTKDTTAAGVIHRGDVADLVVKVLNSDATIKGIFTAVDPTIKNQYSSE 711
            Y KVFVAGGSKGVGR +VDKLV  G+EVVALVR ++A  EL  L GVTA+  DA++ K VEGA+DGCDAAITTLGG     E ++ VDY GN NVIE+AGILGVTRVVLVTS+GCGSS+EA    VY+VLK  L  K KAE +L +YYTN +WTI+RPGGL+SEPPTGK+VLT+DT A G IHRGDVADLVVK L+S  T K I +AVDP+I++  + E
Sbjct:   48 YKKVFVAGGSKGVGRLVVDKLVSNGAEVVALVRSDEAVDELSALDGVTAIKGDAMDYKTVEGAMDGCDAAITTLGGGHNVAEGEKYVDYVGNNNVIEAAGILGVTRVVLVTSIGCGSSKEATPPSVYEVLKDVLVQKEKAEKVLTRYYTNMNWTIVRPGGLVSEPPTGKAVLTEDTMAIGSIHRGDVADLVVKALSSKNTEKKILSAVDPSIESASNPE 266          
BLAST of mRNA_S-ischiensis_contig79.19167.1 vs. uniprot
Match: A0A7S3L6R6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6R6_9STRA)

HSP 1 Score: 270 bits (691), Expect = 4.540e-88
Identity = 140/226 (61.95%), Postives = 176/226 (77.88%), Query Frame = 1
Query:   58 YGKVFVAGGSKGVGRAIVDKLVEQGSEVVALVRREDAKAELEQLPGVTAVLADALEIKAVEGALDGCDAAITTLGGAPEGDETQRVDYAGNRNVIESAGILGVTRVVLVTSVGCGSSREAISDDVYQVLKKALDAKTKAENMLIKYYTNSDWTIIRPGGLISEPPTGKSVLTKDTTAAGVIHRGDVADLVVKVLNSDATIKGIFTAVDPTIKNQYSSEREVAAFQL 735
            Y  VFVAGGSKGVGR ++DKL+EQGS+VVALVR+E+  A+L  + GVTA++ DA + K VE A+DGCDAAITTLGG+ + D   R+DYAGN NVIESAGILGV R++LVTSVGCGSS+EA  + V++ LK+ L AK KAEN+LIKYYTNS+W+IIRPGGL SEP TG ++LT+D    G IHR DVA LVV+ L S  T + I TA+DP+I++  ++  EV AF L
Sbjct:   39 YKNVFVAGGSKGVGRLVIDKLLEQGSKVVALVRKEEVAADLNSIEGVTAIVGDAFDQKTVENAMDGCDAAITTLGGSTQ-DTGARIDYAGNSNVIESAGILGVQRIILVTSVGCGSSKEAAPEAVFEALKEVLLAKEKAENVLIKYYTNSNWSIIRPGGLKSEPATGNAILTEDNKTIGTIHREDVASLVVRCLESPKTERKILTAIDPSIESAVATGAEVEAFAL 263          
BLAST of mRNA_S-ischiensis_contig79.19167.1 vs. uniprot
Match: A0A7S2UDM5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UDM5_9STRA)

HSP 1 Score: 268 bits (686), Expect = 4.550e-87
Identity = 145/227 (63.88%), Postives = 173/227 (76.21%), Query Frame = 1
Query:   58 YGKVFVAGGSKGVGRAIVDKLVEQGSEVVALVRREDAKAELEQLPGVTAVLADALEIKAVEGALDGCDAAITTLGGAPEGDETQRVDYAGNRNVIESAGILGVTRVVLVTSVGCGSSREAISDDVYQVLKKALDAKTKAENMLIKYYTNSDWTIIRPGGLISEPPTGKSVLTKDTTAAGVIHRGDVADLVVKVLNSDATIKGIFTAVDPTIKNQYSSE-REVAAFQL 735
            Y KVFVAGGSKGVGR +VDKLV  G+ VVALVR E+A AEL  L GVTAV+ DA + KAVEGA+DGCDAA++TLGG    +  QRVDY GN NVIE+AGILGVTRVVL+TS+GCGSS+EA    V++VLK  L AK +AEN+LIKYYTN++WTIIRPGGL SEP TGK++LT+D  A G IHR DVA L ++ L S  T + I +AVDP I +  + E R V AF L
Sbjct:   53 YNKVFVAGGSKGVGRLVVDKLVGSGTGVVALVRSEEAAAELNALDGVTAVIGDAFDYKAVEGAMDGCDAAMSTLGGGTVEEGKQRVDYEGNSNVIEAAGILGVTRVVLITSIGCGSSKEAAPPSVFEVLKDVLSAKERAENILIKYYTNTNWTIIRPGGLKSEPATGKAILTEDNMAIGSIHREDVAALAIQALTSPKTKQKILSAVDPEITSAANVEGRVVEAFAL 279          
BLAST of mRNA_S-ischiensis_contig79.19167.1 vs. uniprot
Match: A0A6U3NUE1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NUE1_9STRA)

HSP 1 Score: 266 bits (681), Expect = 2.440e-86
Identity = 142/222 (63.96%), Postives = 170/222 (76.58%), Query Frame = 1
Query:   55 AYGKVFVAGGSKGVGRAIVDKLVEQGSEVVALVRREDAKAELEQLPGVTAVLADALEIKAVEGALDGCDAAITTLGGAPEGDETQRVDYAGNRNVIESAGILGVTRVVLVTSVGCGSSREAISDDVYQVLKKALDAKTKAENMLIKYYTNSDWTIIRPGGLISEPPTGKSVLTKDTTAAGVIHRGDVADLVVKVLNSDATIKGIFTAVDPTIKNQYSSEREV 720
            AY KVFVAGGSKGVGR IVDKL+E GSEVVALVR ++A  EL  L GVTA+L DA E K VEGA+DGCDAAITTLG    G++ +RVDY GN NVIE+AGILGVTRV+L+TS+GCGSS+EA    V++VLK  L AK +AEN+LIKYYTN +WTIIRPGGL SEP TG+++LT+D  A G IHR DVA L VK L S  T + + +AVD +I +  + E  V
Sbjct:   50 AYKKVFVAGGSKGVGRHIVDKLIEDGSEVVALVRSQEAIDELSALEGVTAILGDAFEYKNVEGAMDGCDAAITTLGQGTAGEDGKRVDYEGNSNVIEAAGILGVTRVILITSIGCGSSKEAAPPSVFEVLKDVLAAKERAENVLIKYYTNMNWTIIRPGGLKSEPGTGEAILTEDAMAIGSIHREDVAALAVKALTSSKTERKVLSAVDQSIPSASNVEGRV 271          
BLAST of mRNA_S-ischiensis_contig79.19167.1 vs. uniprot
Match: A0A7S4AAV3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AAV3_9STRA)

HSP 1 Score: 265 bits (678), Expect = 9.010e-86
Identity = 140/227 (61.67%), Postives = 179/227 (78.85%), Query Frame = 1
Query:   58 YGKVFVAGGSKGVGRAIVDKLVEQGSEVVALVRREDAKAELEQLPGVTAVLADALEIKAVEGALDGCDAAITTLGGAPEGDETQRVDYAGNRNVIESAGILGVTRVVLVTSVGCGSSREAISDDVYQVLKKALDAKTKAENMLIKYYTNSDWTIIRPGGLISEPPTGKSVLTKDTTAAGVIHRGDVADLVVKVLNSDATIKGIFTAVDPTIKNQYSSE-REVAAFQL 735
            Y KVFVAGGSKGVG AIV+KL  +G+EVVALVR E++K EL  + GVTA+L DA   K VE A+DGCDAAITTLGG       +RVDY GN NVIESAGILGV R++LVTSVGCGSS+ A   +V+++LK  L AK KAEN+LI++YTNS+W+IIRPGGL+SEP TGK++LT+DTTA G IHR DVADLV++ ++S  T + + +AVDP+I +Q + + +E+ AF+L
Sbjct:   63 YKKVFVAGGSKGVGHAIVEKLSARGTEVVALVRSEESKTELNSMSGVTAILGDAFNQKDVENAMDGCDAAITTLGGTAA---DRRVDYEGNNNVIESAGILGVQRILLVTSVGCGSSKGAAPPNVFEILKDVLAAKEKAENVLIEWYTNSNWSIIRPGGLVSEPMTGKAILTEDTTAIGSIHREDVADLVIRAMDSPKTERVVLSAVDPSIASQVAVKGKEIPAFEL 286          
BLAST of mRNA_S-ischiensis_contig79.19167.1 vs. uniprot
Match: A0A7S0AIJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AIJ9_9STRA)

HSP 1 Score: 264 bits (674), Expect = 2.720e-85
Identity = 144/229 (62.88%), Postives = 173/229 (75.55%), Query Frame = 1
Query:   37 AGDVRMA--YGKVFVAGGSKGVGRAIVDKLVEQGSEVVALVRREDAKAELEQLPGVTAVLADALEIKAVEGALDGCDAAITTLGGA--PEGDETQRVDYAGNRNVIESAGILGVTRVVLVTSVGCGSSREAISDDVYQVLKKALDAKTKAENMLIKYYTNSDWTIIRPGGLISEPPTGKSVLTKDTTAAGVIHRGDVADLVVKVLNSDATIKGIFTAVDPTIKNQYSSE 711
            AGD   A  Y KVFVAGGS+GVGRA+VD L+  GSEVVALVR ++A+AEL  L GVT    DA + KAVEGA+DGCDAAITT+G    P G+  +RVDY GN NVIE+AGILGVTRVVLVTS+GCGSS+EA    V++VLK  L AK +AEN+LIKYYTN +WTI+RPGGL SEP TG ++LT++  A G IHR DVADLVV+ LNS  T + I +AVDP I    ++E
Sbjct:   48 AGDAAPASKYSKVFVAGGSRGVGRAVVDGLLSAGSEVVALVRTDEAEAELSALDGVTVARGDAFDYKAVEGAMDGCDAAITTMGQGTDPVGENGKRVDYVGNNNVIEAAGILGVTRVVLVTSIGCGSSKEAAPPSVFEVLKDVLAAKERAENVLIKYYTNMNWTIVRPGGLKSEPATGTAILTENNLAIGSIHREDVADLVVQALNSGNTERKILSAVDPEISASANAE 276          
BLAST of mRNA_S-ischiensis_contig79.19167.1 vs. uniprot
Match: A0A7S2HK64_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HK64_9STRA)

HSP 1 Score: 261 bits (668), Expect = 2.510e-84
Identity = 138/222 (62.16%), Postives = 169/222 (76.13%), Query Frame = 1
Query:   55 AYGKVFVAGGSKGVGRAIVDKLVEQGSEVVALVRREDAKAELEQLPGVTAVLADALEIKAVEGALDGCDAAITTLGGAPEGDETQRVDYAGNRNVIESAGILGVTRVVLVTSVGCGSSREAISDDVYQVLKKALDAKTKAENMLIKYYTNSDWTIIRPGGLISEPPTGKSVLTKDTTAAGVIHRGDVADLVVKVLNSDATIKGIFTAVDPTIKNQYSSEREV 720
            AY KVFVAGGSKGVGR IVDKL+E GSEVVALVR ++A  EL  + GVT +L DA E K VE A+DGCDAAITTLG     ++ +RVDY GN NVIE+AGILGVTRV+LVTS+GCGSS+EA    V++VLK  L AK +AEN+LIKYYTN++WTI+RPGGL SEP TG+++LT+D  A G IHR DVA L+VK L S  T + + +AVD +I +  + E  V
Sbjct:   53 AYKKVFVAGGSKGVGRLIVDKLIEDGSEVVALVRSQEAVDELGAIDGVTPILGDAFEYKNVENAMDGCDAAITTLGQGSATEDGKRVDYEGNSNVIEAAGILGVTRVILVTSIGCGSSKEAAPPSVFEVLKDVLAAKERAENVLIKYYTNTNWTIVRPGGLKSEPATGEAILTEDAMAIGSIHREDVASLIVKALTSSKTERKVLSAVDQSIPSASNVEGRV 274          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig79.19167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ06_ECTSI5.000e-11672.95Epimerase/dehydrogenase n=1 Tax=Ectocarpus silicul... [more]
A0A835Z825_9STRA2.470e-9264.10Epimerase/dehydrogenase n=1 Tax=Tribonema minus Ta... [more]
B7FVE3_PHATC2.380e-9165.64Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
B8C036_THAPS6.040e-8966.21NAD(P)-bd_dom domain-containing protein n=1 Tax=Th... [more]
A0A7S3L6R6_9STRA4.540e-8861.95Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2UDM5_9STRA4.550e-8763.88Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6U3NUE1_9STRA2.440e-8663.96Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4AAV3_9STRA9.010e-8661.67Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S0AIJ9_9STRA2.720e-8562.88Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7S2HK64_9STRA2.510e-8462.16Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig79contigS-ischiensis_contig79:166670..170791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score341.7
Seed ortholog evalue2.9e-91
Seed eggNOG ortholog2880.D7FJ06
EggNOG free text desc.divinyl chlorophyllide a 8-vinyl-reductase activity
EggNOG OGsCOG0702@1,KOG1203@2759
Ec32 ortholog descriptionepimerase/dehydrogenase
Ec32 orthologEc-07_004910.1
COG Functional cat.GM
BiGG ReactioniRC1080.CRv4_Au5_s6_g13409_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size738
Cds size738
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig79.19167.1prot_S-ischiensis_contig79.19167.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig79 166670..170791 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817250.9233863-CDS-S-ischiensis_contig79:166669..1668621622817250.9233863-CDS-S-ischiensis_contig79:166669..166862Schizocladia ischiensis KU_0333CDSS-ischiensis_contig79 166670..166862 +
1695740969.8579795-CDS-S-ischiensis_contig79:166669..1668621695740969.8579795-CDS-S-ischiensis_contig79:166669..166862Schizocladia ischiensis KU_0333CDSS-ischiensis_contig79 166670..166862 +
1622817250.93773-CDS-S-ischiensis_contig79:168033..1682781622817250.93773-CDS-S-ischiensis_contig79:168033..168278Schizocladia ischiensis KU_0333CDSS-ischiensis_contig79 168034..168278 +
1695740969.8721807-CDS-S-ischiensis_contig79:168033..1682781695740969.8721807-CDS-S-ischiensis_contig79:168033..168278Schizocladia ischiensis KU_0333CDSS-ischiensis_contig79 168034..168278 +
1622817250.9505577-CDS-S-ischiensis_contig79:169664..1698311622817250.9505577-CDS-S-ischiensis_contig79:169664..169831Schizocladia ischiensis KU_0333CDSS-ischiensis_contig79 169665..169831 +
1695740969.883293-CDS-S-ischiensis_contig79:169664..1698311695740969.883293-CDS-S-ischiensis_contig79:169664..169831Schizocladia ischiensis KU_0333CDSS-ischiensis_contig79 169665..169831 +
1622817250.964637-CDS-S-ischiensis_contig79:170658..1707911622817250.964637-CDS-S-ischiensis_contig79:170658..170791Schizocladia ischiensis KU_0333CDSS-ischiensis_contig79 170659..170791 +
1695740969.8977673-CDS-S-ischiensis_contig79:170658..1707911695740969.8977673-CDS-S-ischiensis_contig79:170658..170791Schizocladia ischiensis KU_0333CDSS-ischiensis_contig79 170659..170791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig79.19167.1

>prot_S-ischiensis_contig79.19167.1 ID=prot_S-ischiensis_contig79.19167.1|Name=mRNA_S-ischiensis_contig79.19167.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=246bp
MGHARSRLGHASAGDVRMAYGKVFVAGGSKGVGRAIVDKLVEQGSEVVAL
VRREDAKAELEQLPGVTAVLADALEIKAVEGALDGCDAAITTLGGAPEGD
ETQRVDYAGNRNVIESAGILGVTRVVLVTSVGCGSSREAISDDVYQVLKK
ALDAKTKAENMLIKYYTNSDWTIIRPGGLISEPPTGKSVLTKDTTAAGVI
HRGDVADLVVKVLNSDATIKGIFTAVDPTIKNQYSSEREVAAFQL*
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mRNA from alignment at S-ischiensis_contig79:166670..170791+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig79.19167.1 ID=mRNA_S-ischiensis_contig79.19167.1|Name=mRNA_S-ischiensis_contig79.19167.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4122bp|location=Sequence derived from alignment at S-ischiensis_contig79:166670..170791+ (Schizocladia ischiensis KU_0333)
ATGGGCCACGCGCGCTCCAGGTTGGGGCACGCCTCCGCAGGTGATGTGCG CATGGCCTACGGAAAGGTGTTTGTCGCTGGCGGCTCTAAGGGTGTCGGGC GGGCCATCGTGGACAAGCTTGTAGAACAGGGGTCGGAGGTGGTGGCTCTG GTGCGCAGGGAGGATGCCAAGGCGGAGCTGGAGCAGCTGCCAGGTAAATT ACGTAGATTAAGAATTATGGGAGGGGCACCTCCCTACCTGCAGTAGGCTT CGAAATATACCGTTGCCGGCTCTTCTACGGTGCATGCGCGCGGGAACGCG GCTCGATAGTATAGTACTGTACAGTGTATGTGTGTATTCCCGTTGTTCTT GCCGCAGTGCCACATTACTCCACCCCCCCTTCCCATCCCCCCCTCCCCTC CCCCTTCCCTTCACTCTCTCCCGTCCTCTCCTTCCTCCTCCTCCTCCGCC TCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCCTCCCCCTCCCCTTCCCC ATACACCCCTTCCCTGGAGAGCTAAGGAAGGGCTACTGTTGTGGACTTCA GTGACATGGCCTGCAGCTCGCCGTGTGTTGTTCCTGTTAGTGTCGTACTA CAGTACTCGTACAGTACGATGTAGGGCGTAGCGCACTGCTACGTACGAGT AGTACCAAGTCCTACTACTGTACCGGTGCAGTAGTTCTGCACAAGTGCTT GTGCTACGAGTGCAGCACCGTGTGCACAATGTACAGTAGCATCGCACACA CGTGGTGATTCCAGTGGCAGGTGTGAGCAGGTACTCCCTCTCGGTGACTG CTTGGCGGTGCCATGCCTGCGCCAGAATTCTGTTTAGTTTCCGCATTTTG CACTTGTCGTGGTCCGCCACGTACAATGCTTAGCCACCACAACAGAAGCC CCCAATGGTGGGCCGGTGTGTGTATTTCCAGTGTATGGACTGGGCCACCC CTCCGCTTCTGGCGGGGGGGTGGCCACCCCCTCCCACCCTGGCTCTGCCA GGGGAGGGAGGGGTCCTGCTCCGTCTCGACCGAGGCGGTCAATTGTCTCG GGACTACGGCAAGCACCACGTGAGTACATATATATATATATATGGTACAT ATATATATGGGGAAGTAGTAGATACCATTTGAGTGTGGCAGTCTCTCCCC CCCCCCTCCTTCCTGCTGGCCTTGGCAAACGACTTGCCTGCTTGCACCGC ACCTGCACACTTGCCCCCCCGCCCTGCCCCGCCCCGCCCCGCCCCGTCCT CTCCATTCTTCCTTCCTCTGACCCCCCTGTGCCCGTCCCTCCCCGCCCTT TGAACCTGCCCCCCCCCCCTCCCATTGTCTCCATTCCATTCTCCCCTCCT TGGGCCCCTTTCAGGCGTGACAGCAGTCTTGGCCGATGCCCTCGAGATCA AGGCAGTGGAGGGGGCTTTGGATGGGTGCGACGCCGCCATCACCACCTTG GGGGGGGCGCCGGAGGGGGACGAGACCCAGCGGGTGGACTACGCCGGGAA CCGGAACGTCATTGAGTCGGCGGGGATCCTGGGCGTGACGCGGGTGGTGC TGGTGACCAGCGTCGGGTGCGGGAGCAGCCGCGAGGCCATCAGCGACGAC GTTTACCAGGTGGGTGGTGATGTAAGAACACTCAATTCTTAAATGGGACA ACTGCTAGTACGAGGACAGTCAATCTCACACACGTGCGATTGTACTGTAC CTCGTTACAATTTATGCAAATCACTGCAGTTCCAGGTGCATGGTGCTTGG CCGGCAGCCGGCCCTGTCCGTCCGTCACATCCGTTTCATTCTTCCGTCTC TCCGGCCGGCCGGCCCTCCCTCCCTCACTGCAGTTCCAGGTGCATGGTGC TTGGCCGGCAGCCGGCCCTGTCCGTCCGTCACATCCGTTTCATTCTTCCG TCTCTCCGGCCGGCCGGCCCTCCCTCCCTCCGTTTGCGCCCATCCATCCG TCCACCCGGGTCACGCGCCCGCCCGTCCGTCCGCCTTTGCCCGTTGTTTA TTTTTCCTGAACGGACGCCTCTCGCGACCTTCGCTCGCACGGTATTGTGC GCCGGTGAGTTTCAACCCCGTGAGAAGGCCAGTACCCACCATGCATACTT GGAAGTACACCAAGTATGCCCATTGGTGTACCCCAAGTAATTTTTTATGA GGCAGGCCTCCAAGGGCTGCATGTGTGTGCACACCTACTGTCATGTACTA CGTAGTATGTACTTCGAAGTATGTGCTTTGTATGTCGTTGGCTACCTACT ATCACAGCTTCTTTCACAGTGCCCACGGCACATGGCCCGTGGCAATCACA ACATGGTTTACTAGTACTGTAGAGATATACAAAGTACTTGTACTTCCGTA CTGTAGAGGCACATAGGGGTCATTGGTGTCGGGATTACCACAAGCACAGC GTGAGTACATATATGTATACTACGTATATACTTCGACGAAGTAGAGGGGT GTGCTTGTAGCTGGGAAGTGCACGTCTTGTACGTCTGGAAGGCTGTCAGC ACTCTGCAGATGCTCCTAGGCGAATCCTGTTCCCACCTGTGTGGAGTGTG GTGTGTGCGGTGGGTTCTCGGGCGTATGGATGCCGTTTGCTCTCGCTCCA TGTGTGTTGACCACGGAATAACCAGCACACCAGACGGACGCCAAGCCGGA CGGATCATGTAAGGTCAAGTTACATGACCAGCCACATGAAGAGCATTCAG GTCCAGGGCACGAATACGGCACCGTTGAATGCCCAAGTGCTATATGTGCA GTGCTTCGAAAAACAGCTACAAGTACATGCTTGGAAACGCCGAGCTCCGC TATACAGCGTCCACATTAGCCCTCCTTGCTGGTGGAACCCGGGTACTCTT AAAGGTATTCTTGAGTAACGCCGGACTGTGCCAAGTACTCCAAGTACTTC GAAGTACTTAAGTACAGTATGCTACGAGCCAAGCAGCAAGGTGCAGTATT GTACGGGTTTGGCCGTAGTCTGACACTTGCGGCGCCGGCTGGCAGGTCCT GAAGAAGGCTCTGGATGCCAAGACCAAGGCGGAGAACATGCTGATCAAGT ACTACACCAACTCCGACTGGACCATTATCCGGCCGGGGGGGCTCATCAGC GAGCCGCCCACTGGAAAGTCCGTGCTGACCAAGGACACAACGGCTGCTGG TGTCATCCACAGGTACGAAGTACTTCGAAGTACTTAATTGGAAGTGGTAT ATTTGTCAAGTTTTGTTGCAGTGTGACTCGACGTTACAGTGGGTCGATTG TAGGCTCAGAGGAGGGGAGCACCTTGTGTTACAGTGCATTGCATGGTACT GTTCGTTTGGGATAGACTCGAGTACTTCGGAGTAGTTACGGCGAGTTTTG GTAGATATGCGGGGGCGTTTTGTAGCTGTGTTTCAAGCTTCTAGAAAAGG CACACGCCGTCCAAGGTGCATGCAGCTGTGAAAGACAATTTACTCTCCTT GAAACCACACCCTGCGGGAAGGCGCATGCAGCGCTGATGGGTGGTGCCGT GGTGCACGACACCCTTGTGCTTGACAATATTGTAGGCAGGGGTCGTTCTG ACGACGCCAGTCGTGCGCATGGATCCTGGCCGGCCCGTTTCATTTTGGGT CATTCCCTTTCCACTGTATCGTTTTGGTACTGTAGCAGTCCTGTACAGTA GAATTGTGGTGTTGCCCTTGCCTGTTGACTTTGTTTGTGGCCCATTTCAG TCTGCCCCTTGAGTGGGCGCAAACGACAAGGCCGCCTCCTCCACCCACCA ACCCTTGTGACTGGCGACTTGGAAGGCCTTGGTCAGGTCCTCATCAAGGA AATCAATGCGCAGCACCCGCCGGAGTACGCAACGTCAACCCTTCCATATT TCTAATACGAGAACTATCAATCTCACACATGTGCAATTGTACCTCGGTAC AATCTATATGGACCACCTTCCACAATGCTAACCATCTTGCCTGACGAATG TGACCGGCACCGCCGTCGCCCCCTGGCGTCTGTCCGCAGAGGGGATGTGG CGGACTTGGTGGTCAAGGTCCTCAACTCGGACGCAACAATCAAGGGAATC TTCACGGCCGTGGACCCTACCATCAAGAACCAGTACAGCTCCGAACGGGA GGTTGCCGCATTTCAACTGTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig79:166670..170791+

>mRNA_S-ischiensis_contig79.19167.1 ID=mRNA_S-ischiensis_contig79.19167.1|Name=mRNA_S-ischiensis_contig79.19167.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1476bp|location=Sequence derived from alignment at S-ischiensis_contig79:166670..170791+ (Schizocladia ischiensis KU_0333)
ATGGGCCACGCGCGCTCCAGGTTGGGGCACGCCTCCGCAGGTGATGTGCG
CATGGCCTACGGAAAGGTGTTTGTCGCTGGCGGCTCTAAGGGTGTCGGGC
GGGCCATCGTGGACAAGCTTGTAGAACAGGGGTCGGAGGTGGTGGCTCTG
GTGCGCAGGGAGGATGCCAAGGCGGAGCTGGAGCAGCTGCCAGATGGGCC
ACGCGCGCTCCAGGTTGGGGCACGCCTCCGCAGGTGATGTGCGCATGGCC
TACGGAAAGGTGTTTGTCGCTGGCGGCTCTAAGGGTGTCGGGCGGGCCAT
CGTGGACAAGCTTGTAGAACAGGGGTCGGAGGTGGTGGCTCTGGTGCGCA
GGGAGGATGCCAAGGCGGAGCTGGAGCAGCTGCCAGGCGTGACAGCAGTC
TTGGCCGATGCCCTCGAGATCAAGGCAGTGGAGGGGGCTTTGGATGGGTG
CGACGCCGCCATCACCACCTTGGGGGGGGCGCCGGAGGGGGACGAGACCC
AGCGGGTGGACTACGCCGGGAACCGGAACGTCATTGAGTCGGCGGGGATC
CTGGGCGTGACGCGGGTGGTGCTGGTGACCAGCGTCGGGTGCGGGAGCAG
CCGCGAGGCCATCAGCGACGACGTTTACCAGGCGTGACAGCAGTCTTGGC
CGATGCCCTCGAGATCAAGGCAGTGGAGGGGGCTTTGGATGGGTGCGACG
CCGCCATCACCACCTTGGGGGGGGCGCCGGAGGGGGACGAGACCCAGCGG
GTGGACTACGCCGGGAACCGGAACGTCATTGAGTCGGCGGGGATCCTGGG
CGTGACGCGGGTGGTGCTGGTGACCAGCGTCGGGTGCGGGAGCAGCCGCG
AGGCCATCAGCGACGACGTTTACCAGGTCCTGAAGAAGGCTCTGGATGCC
AAGACCAAGGCGGAGAACATGCTGATCAAGTACTACACCAACTCCGACTG
GACCATTATCCGGCCGGGGGGGCTCATCAGCGAGCCGCCCACTGGAAAGT
CCGTGCTGACCAAGGACACAACGGCTGCTGGTGTCATCCACAGGTCCTGA
AGAAGGCTCTGGATGCCAAGACCAAGGCGGAGAACATGCTGATCAAGTAC
TACACCAACTCCGACTGGACCATTATCCGGCCGGGGGGGCTCATCAGCGA
GCCGCCCACTGGAAAGTCCGTGCTGACCAAGGACACAACGGCTGCTGGTG
TCATCCACAGAGGGGATGTGGCGGACTTGGTGGTCAAGGTCCTCAACTCG
GACGCAACAATCAAGGGAATCTTCACGGCCGTGGACCCTACCATCAAGAA
CCAGTACAGCTCCGAACGGGAGGTTGCCGCATTTCAACTGTGAAGGGGAT
GTGGCGGACTTGGTGGTCAAGGTCCTCAACTCGGACGCAACAATCAAGGG
AATCTTCACGGCCGTGGACCCTACCATCAAGAACCAGTACAGCTCCGAAC
GGGAGGTTGCCGCATTTCAACTGTGA
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