mRNA_S-ischiensis_contig78.19135.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig78.19135.1
Unique NamemRNA_S-ischiensis_contig78.19135.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig78.19135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig78contigS-ischiensis_contig78:676215..676733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size521
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817240.2721505-CDS-S-ischiensis_contig78:676214..6767331622817240.2721505-CDS-S-ischiensis_contig78:676214..676733Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 676215..676733 +
1695740961.34997-CDS-S-ischiensis_contig78:676214..6767331695740961.34997-CDS-S-ischiensis_contig78:676214..676733Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 676215..676733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig78.19135.1prot_S-ischiensis_contig78.19135.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig78 676215..676733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig78.19135.1

>prot_S-ischiensis_contig78.19135.1 ID=prot_S-ischiensis_contig78.19135.1|Name=mRNA_S-ischiensis_contig78.19135.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=173bp
DDCSVLEGEEHTSGAPPPSGPREGDRWGWKKGVPAAGPLCRCTHSVRTWF
PRGSEACGFCRLRVVLNPWRPRGAGACVDRQARPHCGQSAEQLGRLQACG
GSGGGGSGGGGGSGGARCWACNGQGAGSTRTCSDCAVYAFHCHGTPVTHE
EVNADGAMCACMSANRGRDTDMC
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mRNA from alignment at S-ischiensis_contig78:676215..676733+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig78.19135.1 ID=mRNA_S-ischiensis_contig78.19135.1|Name=mRNA_S-ischiensis_contig78.19135.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=519bp|location=Sequence derived from alignment at S-ischiensis_contig78:676215..676733+ (Schizocladia ischiensis KU_0333)
GACGATTGTAGCGTACTGGAGGGGGAAGAGCATACGTCTGGCGCCCCCCC
TCCCTCGGGGCCGAGGGAGGGAGATCGTTGGGGGTGGAAAAAGGGGGTTC
CGGCAGCTGGCCCACTCTGCAGATGCACGCACTCCGTCCGGACTTGGTTT
CCCCGGGGCTCAGAGGCCTGCGGCTTCTGCCGCCTGCGTGTAGTATTAAA
CCCATGGCGCCCCCGGGGGGCCGGCGCTTGTGTAGACCGGCAAGCTCGGC
CTCATTGTGGCCAGTCTGCAGAGCAGCTGGGCCGCTTACAGGCGTGCGGT
GGCAGCGGTGGCGGTGGCAGCGGCGGCGGCGGCGGCAGCGGGGGCGCTCG
ATGCTGGGCCTGCAATGGCCAGGGCGCTGGCAGCACGCGCACGTGCTCTG
ACTGTGCGGTATACGCCTTCCACTGCCACGGGACACCTGTCACCCACGAG
GAAGTAAACGCCGACGGTGCAATGTGCGCCTGTATGTCGGCAAACCGTGG
CCGTGACACCGACATGTGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig78:676215..676733+

>mRNA_S-ischiensis_contig78.19135.1 ID=mRNA_S-ischiensis_contig78.19135.1|Name=mRNA_S-ischiensis_contig78.19135.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1038bp|location=Sequence derived from alignment at S-ischiensis_contig78:676215..676733+ (Schizocladia ischiensis KU_0333)
GACGATTGTAGCGTACTGGAGGGGGAAGAGCATACGTCTGGCGCCCCCCC
TCCCTCGGGGCCGAGGGAGGGAGATCGTTGGGGGTGGAAAAAGGGGGTTC
CGGCAGCTGGCCCACTCTGCAGATGCACGCACTCCGTCCGGACTTGGTTT
CCCCGGGGCTCAGAGGCCTGCGGCTTCTGCCGCCTGCGTGTAGTATTAAA
CCCATGGCGCCCCCGGGGGGCCGGCGCTTGTGTAGACCGGCAAGCTCGGC
CTCATTGTGGCCAGTCTGCAGAGCAGCTGGGCCGCTTACAGGCGTGCGGT
GGCAGCGGTGGCGGTGGCAGCGGCGGCGGCGGCGGCAGCGGGGGCGCTCG
ATGCTGGGCCTGCAATGGCCAGGGCGCTGGCAGCACGCGCACGTGCTCTG
ACTGTGCGGTATACGCCTTCCACTGCCACGGGACACCTGTCACCCACGAG
GAAGTAAACGCCGACGGTGCAATGTGCGCCTGTATGTCGGCAAACCGTGG
CCGTGACACCGACATGTGCGACGATTGTAGCGTACTGGAGGGGGAAGAGC
ATACGTCTGGCGCCCCCCCTCCCTCGGGGCCGAGGGAGGGAGATCGTTGG
GGGTGGAAAAAGGGGGTTCCGGCAGCTGGCCCACTCTGCAGATGCACGCA
CTCCGTCCGGACTTGGTTTCCCCGGGGCTCAGAGGCCTGCGGCTTCTGCC
GCCTGCGTGTAGTATTAAACCCATGGCGCCCCCGGGGGGCCGGCGCTTGT
GTAGACCGGCAAGCTCGGCCTCATTGTGGCCAGTCTGCAGAGCAGCTGGG
CCGCTTACAGGCGTGCGGTGGCAGCGGTGGCGGTGGCAGCGGCGGCGGCG
GCGGCAGCGGGGGCGCTCGATGCTGGGCCTGCAATGGCCAGGGCGCTGGC
AGCACGCGCACGTGCTCTGACTGTGCGGTATACGCCTTCCACTGCCACGG
GACACCTGTCACCCACGAGGAAGTAAACGCCGACGGTGCAATGTGCGCCT
GTATGTCGGCAAACCGTGGCCGTGACACCGACATGTGC
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