mRNA_S-ischiensis_contig78.19117.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig78.19117.1
Unique NamemRNA_S-ischiensis_contig78.19117.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig78.19117.1 vs. uniprot
Match: A0A6H5KR68_9PHAE (DUF5917 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR68_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 2.130e-34
Identity = 78/149 (52.35%), Postives = 96/149 (64.43%), Query Frame = -1
Query:   34 RYKSLIETVGDLSLESDDDPERGALLLAESTVKDDIAEMLRLLREEDSQNARLERAVFDDVPSGAASA----------LVAFPCVEFVLEKRVVKLLCELGVANRPVGTMAVVLGACAALLGQVSHPLLPSQHVHNPISLLITAAAEAG 450
            RYK L+ET+GDLSL +D DPE  A LL +S   +D+  ML LLR E+ QN+R                          L+A PC+EF+LE+R+VKLLCELG A+RP GT+A+VLGA A+LLGQVSHPLLPSQ VH PI  L+ AA   G
Sbjct:   98 RYKHLVETLGDLSLAADIDPEAAATLLDDSRATEDLDNMLALLRAEERQNSRAXXXXXXXXXXXXXXXXXXXXXXXGDLLATPCLEFLLEERIVKLLCELGAADRPAGTLALVLGAIASLLGQVSHPLLPSQAVHGPIGNLVAAAGAHG 246          
BLAST of mRNA_S-ischiensis_contig78.19117.1 vs. uniprot
Match: D8LN16_ECTSI (DUF5917 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN16_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 4.040e-25
Identity = 65/124 (52.42%), Postives = 83/124 (66.94%), Query Frame = -1
Query:  112 RYKSLIETVGDLSLESDDDPERGALLLAESTVKDDIAEMLRLLREEDSQNARLERA-----------VFDDVPSGAASALVAFPCVEFVLEKRVVKLLCELGVANRPVGTMAVVLGACAALLGQ 450
            RYK L+ET+GDLSL +D DPE  A LL +S   +D+  ML LLR E+ QN+R E++                 SG    L+A PC+EF+LE+RVVKLLCELG A+RP GT+A+VLGA A+LLGQ
Sbjct:   98 RYKHLVETLGDLSLAADIDPEAAATLLDDSRATEDLDNMLALLRAEERQNSRAEQSRGSGGGPXXXXXXXXXXSGGGD-LLATPCLEFLLEERVVKLLCELGAADRPAGTLALVLGAIASLLGQ 220          
BLAST of mRNA_S-ischiensis_contig78.19117.1 vs. uniprot
Match: A0A7S2UZP3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZP3_9STRA)

HSP 1 Score: 106 bits (265), Expect = 6.140e-24
Identity = 56/117 (47.86%), Postives = 81/117 (69.23%), Query Frame = -1
Query:   46 DPERGALLLAESTVKDDIAEMLRLLREEDSQNARLERAVFDDVPSGAASALVAFPCVEFVLEKRVVKLLCELGVANRPVGTMAVVLGACAALLGQVSHPLLPSQHVHNPISLLITAA 396
            D E GA LLAES VK+ I  ++ +L EEDS N   + +V+ ++     S    +PC+E+  E+R+++ LCE+G+A+RP+G M +VLG  AALL ++ +PLLPS+H H PIS LITAA
Sbjct:   45 DAETGARLLAESGVKEHIKNIIHVLIEEDSANLNTDFSVYQELGGSPQS----YPCLEYFFEERIMRTLCEIGMADRPIGMMGLVLGTVAALLKRIQYPLLPSRHCHYPISELITAA 157          
BLAST of mRNA_S-ischiensis_contig78.19117.1 vs. uniprot
Match: A0A7S2WVB2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVB2_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 8.010e-12
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = -1
Query:   40 CVEFVLEKRVVKLLCELGVANRPVGTMAVVLGACAALLGQVSHPLLPSQHVHNPISLLITAAAE 231
            C EF   + ++K LC  G+AN P+GTMA+VLGA AA+L  V++P+LPSQ VH P+S LI  A E
Sbjct:   16 CTEFFFTEDIMKNLCTYGIANTPIGTMALVLGAAAAILKSVNYPMLPSQAVHYPLSKLIYKAKE 79          
BLAST of mRNA_S-ischiensis_contig78.19117.1 vs. uniprot
Match: A0A2D4BNA7_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNA7_PYTIN)

HSP 1 Score: 64.7 bits (156), Expect = 2.850e-9
Identity = 45/146 (30.82%), Postives = 84/146 (57.53%), Query Frame = -1
Query:   40 YKSLIETVGDLSLESDDDPERGALLLAESTVKDDIAEMLRLLREEDSQNARLERAVFDDVPSGAAS-ALVAFP---------CVEFVLEKRVVKLLCELGVANRPVGTMAVVLGACAALLGQVSHPLLPSQHVHNPISLLITAAAE 447
            Y+S +E V    L+ + D      LLAES  +D + +++ L+  E+S + R   A+  D  + AA+ A    P         C+E++L+++++ LLC+ G  ++P G M++ +   AALL +V+HPLLP++ +H  +  L+ +A++
Sbjct:   31 YESRVEDV----LQRELDAHEQRRLLAESHTRDSLQKLVVLIVMEESDSDR--HALLLDAQTPAANDASAPSPMHPHESSRQCLEYMLDRQLLPLLCDAGRRDQPCGIMSLAMQFVAALLSRVNHPLLPTREIHESVVALLQSASK 170          
BLAST of mRNA_S-ischiensis_contig78.19117.1 vs. uniprot
Match: A0A2D4CAP6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAP6_PYTIN)

HSP 1 Score: 62.4 bits (150), Expect = 6.150e-9
Identity = 39/122 (31.97%), Postives = 74/122 (60.66%), Query Frame = -1
Query:   40 LLAESTVKDDIAEMLRLLREEDSQNARLERAVFDDVPSGAAS-ALVAFP---------CVEFVLEKRVVKLLCELGVANRPVGTMAVVLGACAALLGQVSHPLLPSQHVHNPISLLITAAAE 375
            LLAES  +D + +++ L+  E+S + R   A+  D  + AA+ A    P         C+E++L+++++ LLC+ G  ++P G M++ +   AALL +V+HPLLP++ +H  +  L+ +A++
Sbjct:   65 LLAESHTRDSLQKLVVLIVMEESDSDR--HALLLDAQTPAANDASAPSPMHPHESSRQCLEYMLDRQLLPLLCDAGRRDQPCGIMSLAMQFVAALLSRVNHPLLPTREIHESVVALLQSASK 184          
BLAST of mRNA_S-ischiensis_contig78.19117.1 vs. uniprot
Match: UPI00033186F3 (protein FAM160B2 n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI00033186F3)

HSP 1 Score: 58.2 bits (139), Expect = 5.240e-7
Identity = 34/91 (37.36%), Postives = 50/91 (54.95%), Query Frame = -1
Query:   22 LERAVFDDVPSGAASALVAFPCVEFVLEKRVVKLLCELGVANRPVGTMAVVLGACAALLGQVSHPLLPSQHVHNPISLLITAAAEAGGLRT 294
            L+  V+++    AAS   A PC+E++L+ ++++ LC LG A  P G    VL   + +L QV HPLL   HVH P+  L+     A G  T
Sbjct:   67 LDILVYEERQQAAASE--AGPCLEYLLQHKILETLCTLGKAEYPPGMRQQVLQFFSKVLAQVQHPLLHYLHVHRPVQKLLRLGGAAPGSLT 155          
BLAST of mRNA_S-ischiensis_contig78.19117.1 vs. uniprot
Match: UPI001B7EFB8A (protein FAM160B1-like isoform X1 n=2 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7EFB8A)

HSP 1 Score: 55.5 bits (132), Expect = 4.510e-6
Identity = 28/71 (39.44%), Postives = 40/71 (56.34%), Query Frame = -1
Query:   22 PCVEFVLEKRVVKLLCELGVANRPVGTMAVVLGACAALLGQVSHPLLPSQHVHNPISLLITAAAEAGGLRT 234
            PC+E++L+ ++++ LC L  A  P G    VL     LLGQ+  PLLP  +VH P+  LI    E  G +T
Sbjct:   77 PCMEYLLQHKILETLCTLAKAGYPPGMKQQVLLLITKLLGQIQQPLLPHINVHRPVQKLIRLCGEGLGSKT 147          
BLAST of mRNA_S-ischiensis_contig78.19117.1 vs. uniprot
Match: UPI000642D76E (protein FAM160B2 isoform X1 n=3 Tax=Talpidae TaxID=9373 RepID=UPI000642D76E)

HSP 1 Score: 55.1 bits (131), Expect = 6.130e-6
Identity = 32/91 (35.16%), Postives = 48/91 (52.75%), Query Frame = -1
Query:   22 LERAVFDDVPSGAASALVAFPCVEFVLEKRVVKLLCELGVANRPVGTMAVVLGACAALLGQVSHPLLPSQHVHNPISLLITAAAEAGGLRT 294
            L+  V+++    AAS   A PC+E++L+ ++++ LC LG A  P G    V    + +L QV HPLL   HVH P+  L+       G  T
Sbjct:   59 LDILVYEERQQAAASE--AGPCLEYLLQHKILETLCTLGKAEYPPGMRQQVFQFFSKVLAQVQHPLLHYLHVHRPVQKLLRLGGTVPGSLT 147          
BLAST of mRNA_S-ischiensis_contig78.19117.1 vs. uniprot
Match: UPI0003F07C35 (protein FAM160B1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F07C35)

HSP 1 Score: 52.8 bits (125), Expect = 7.130e-6
Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = -1
Query:   67 ESTVKDDIAEMLRLLREEDSQNARLERAVFDDVPSGAASALVAFPCVEFVLEKRVVKLLCELGVANRPVGTMAVVLGACAALLGQVSHPLLPSQHVHNPI 366
            E+ +   I +ML +L +E++ N        D   +G        PC+E++L+ ++++ L  LG A+ P G   VVL   A LLG+V  PLLP  +VH P+
Sbjct:   49 ETNIPSHIDQMLDILTQEEANN--------DSDQTG--------PCMEYLLQHKILETLHALGKADCPCGMKQVVLSFFANLLGKVKQPLLPHVNVHRPV 132          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig78.19117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KR68_9PHAE2.130e-3452.35DUF5917 domain-containing protein n=1 Tax=Ectocarp... [more]
D8LN16_ECTSI4.040e-2552.42DUF5917 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2UZP3_9STRA6.140e-2447.86Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2WVB2_9STRA8.010e-1254.69Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2D4BNA7_PYTIN2.850e-930.82Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A2D4CAP6_PYTIN6.150e-931.97Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
UPI00033186F35.240e-737.36protein FAM160B2 n=1 Tax=Sorex araneus TaxID=42254... [more]
UPI001B7EFB8A4.510e-639.44protein FAM160B1-like isoform X1 n=2 Tax=Carcharod... [more]
UPI000642D76E6.130e-635.16protein FAM160B2 isoform X1 n=3 Tax=Talpidae TaxID... [more]
UPI0003F07C357.130e-634.00protein FAM160B1-like n=1 Tax=Saccoglossus kowalev... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig78contigS-ischiensis_contig78:527293..527742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size451
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817240.2053118-CDS-S-ischiensis_contig78:527292..5277421622817240.2053118-CDS-S-ischiensis_contig78:527292..527742Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 527293..527742 +
1695740961.3239622-CDS-S-ischiensis_contig78:527292..5277421695740961.3239622-CDS-S-ischiensis_contig78:527292..527742Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 527293..527742 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig78.19117.1prot_S-ischiensis_contig78.19117.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig78 527293..527742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig78.19117.1

>prot_S-ischiensis_contig78.19117.1 ID=prot_S-ischiensis_contig78.19117.1|Name=mRNA_S-ischiensis_contig78.19117.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=150bp
KGPLAPRGPQPARLRGGRDEQGDGVVHVLGGQEGVAHLAEERGAGAEHDG
HGADRPVRDAQLAQQLHHALLQHKLHAGEGYQGRRRARGDIVEHRALQAG
VLRVLLAQEAEHLGDVVLDRALRQEERPPLRVVVTLQAQVPHRLDQALVP
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mRNA from alignment at S-ischiensis_contig78:527293..527742+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig78.19117.1 ID=mRNA_S-ischiensis_contig78.19117.1|Name=mRNA_S-ischiensis_contig78.19117.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=450bp|location=Sequence derived from alignment at S-ischiensis_contig78:527293..527742+ (Schizocladia ischiensis KU_0333)
AAGGGCCCCCTCGCCCCACGCGGTCCTCAGCCCGCCCGCCTCCGCGGCGG CCGTGATGAGCAGGGAGATGGGGTTGTGCACGTGCTGGGAGGGCAAGAGG GGGTGGCTCACCTGGCCGAGGAGCGCGGCGCAGGCGCCGAGCACGACGGC CATGGTGCCGACCGGCCGGTTCGCGACGCCCAGCTCGCACAGCAGCTTCA CCACGCGCTTCTCCAGCACAAACTCCACGCAGGGGAAGGCTACCAGGGCC GACGCCGCGCCCGAGGGGACATCGTCGAACACCGCGCGCTCCAGGCGGGC GTTCTGCGAGTCCTCCTCGCGCAGGAGGCGGAGCATCTCGGCGATGTCGT CCTTGACCGTGCTCTCCGCCAGGAGGAGCGCCCCCCGCTCCGGGTCGTCG TCACTCTCCAGGCTCAAGTCCCCCACCGTCTCGATCAGGCTCTTGTACCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig78:527293..527742+

>mRNA_S-ischiensis_contig78.19117.1 ID=mRNA_S-ischiensis_contig78.19117.1|Name=mRNA_S-ischiensis_contig78.19117.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=900bp|location=Sequence derived from alignment at S-ischiensis_contig78:527293..527742+ (Schizocladia ischiensis KU_0333)
AAGGGCCCCCTCGCCCCACGCGGTCCTCAGCCCGCCCGCCTCCGCGGCGG
CCGTGATGAGCAGGGAGATGGGGTTGTGCACGTGCTGGGAGGGCAAGAGG
GGGTGGCTCACCTGGCCGAGGAGCGCGGCGCAGGCGCCGAGCACGACGGC
CATGGTGCCGACCGGCCGGTTCGCGACGCCCAGCTCGCACAGCAGCTTCA
CCACGCGCTTCTCCAGCACAAACTCCACGCAGGGGAAGGCTACCAGGGCC
GACGCCGCGCCCGAGGGGACATCGTCGAACACCGCGCGCTCCAGGCGGGC
GTTCTGCGAGTCCTCCTCGCGCAGGAGGCGGAGCATCTCGGCGATGTCGT
CCTTGACCGTGCTCTCCGCCAGGAGGAGCGCCCCCCGCTCCGGGTCGTCG
TCACTCTCCAGGCTCAAGTCCCCCACCGTCTCGATCAGGCTCTTGTACCT
AAGGGCCCCCTCGCCCCACGCGGTCCTCAGCCCGCCCGCCTCCGCGGCGG
CCGTGATGAGCAGGGAGATGGGGTTGTGCACGTGCTGGGAGGGCAAGAGG
GGGTGGCTCACCTGGCCGAGGAGCGCGGCGCAGGCGCCGAGCACGACGGC
CATGGTGCCGACCGGCCGGTTCGCGACGCCCAGCTCGCACAGCAGCTTCA
CCACGCGCTTCTCCAGCACAAACTCCACGCAGGGGAAGGCTACCAGGGCC
GACGCCGCGCCCGAGGGGACATCGTCGAACACCGCGCGCTCCAGGCGGGC
GTTCTGCGAGTCCTCCTCGCGCAGGAGGCGGAGCATCTCGGCGATGTCGT
CCTTGACCGTGCTCTCCGCCAGGAGGAGCGCCCCCCGCTCCGGGTCGTCG
TCACTCTCCAGGCTCAAGTCCCCCACCGTCTCGATCAGGCTCTTGTACCT
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