mRNA_S-ischiensis_contig78.19117.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig78.19117.1 vs. uniprot
Match: A0A6H5KR68_9PHAE (DUF5917 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR68_9PHAE) HSP 1 Score: 136 bits (343), Expect = 2.130e-34 Identity = 78/149 (52.35%), Postives = 96/149 (64.43%), Query Frame = -1
Query: 34 RYKSLIETVGDLSLESDDDPERGALLLAESTVKDDIAEMLRLLREEDSQNARLERAVFDDVPSGAASA----------LVAFPCVEFVLEKRVVKLLCELGVANRPVGTMAVVLGACAALLGQVSHPLLPSQHVHNPISLLITAAAEAG 450
RYK L+ET+GDLSL +D DPE A LL +S +D+ ML LLR E+ QN+R L+A PC+EF+LE+R+VKLLCELG A+RP GT+A+VLGA A+LLGQVSHPLLPSQ VH PI L+ AA G
Sbjct: 98 RYKHLVETLGDLSLAADIDPEAAATLLDDSRATEDLDNMLALLRAEERQNSRAXXXXXXXXXXXXXXXXXXXXXXXGDLLATPCLEFLLEERIVKLLCELGAADRPAGTLALVLGAIASLLGQVSHPLLPSQAVHGPIGNLVAAAGAHG 246
BLAST of mRNA_S-ischiensis_contig78.19117.1 vs. uniprot
Match: D8LN16_ECTSI (DUF5917 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN16_ECTSI) HSP 1 Score: 110 bits (274), Expect = 4.040e-25 Identity = 65/124 (52.42%), Postives = 83/124 (66.94%), Query Frame = -1
Query: 112 RYKSLIETVGDLSLESDDDPERGALLLAESTVKDDIAEMLRLLREEDSQNARLERA-----------VFDDVPSGAASALVAFPCVEFVLEKRVVKLLCELGVANRPVGTMAVVLGACAALLGQ 450
RYK L+ET+GDLSL +D DPE A LL +S +D+ ML LLR E+ QN+R E++ SG L+A PC+EF+LE+RVVKLLCELG A+RP GT+A+VLGA A+LLGQ
Sbjct: 98 RYKHLVETLGDLSLAADIDPEAAATLLDDSRATEDLDNMLALLRAEERQNSRAEQSRGSGGGPXXXXXXXXXXSGGGD-LLATPCLEFLLEERVVKLLCELGAADRPAGTLALVLGAIASLLGQ 220
BLAST of mRNA_S-ischiensis_contig78.19117.1 vs. uniprot
Match: A0A7S2UZP3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZP3_9STRA) HSP 1 Score: 106 bits (265), Expect = 6.140e-24 Identity = 56/117 (47.86%), Postives = 81/117 (69.23%), Query Frame = -1
Query: 46 DPERGALLLAESTVKDDIAEMLRLLREEDSQNARLERAVFDDVPSGAASALVAFPCVEFVLEKRVVKLLCELGVANRPVGTMAVVLGACAALLGQVSHPLLPSQHVHNPISLLITAA 396
D E GA LLAES VK+ I ++ +L EEDS N + +V+ ++ S +PC+E+ E+R+++ LCE+G+A+RP+G M +VLG AALL ++ +PLLPS+H H PIS LITAA
Sbjct: 45 DAETGARLLAESGVKEHIKNIIHVLIEEDSANLNTDFSVYQELGGSPQS----YPCLEYFFEERIMRTLCEIGMADRPIGMMGLVLGTVAALLKRIQYPLLPSRHCHYPISELITAA 157
BLAST of mRNA_S-ischiensis_contig78.19117.1 vs. uniprot
Match: A0A7S2WVB2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVB2_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 8.010e-12 Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = -1
Query: 40 CVEFVLEKRVVKLLCELGVANRPVGTMAVVLGACAALLGQVSHPLLPSQHVHNPISLLITAAAE 231
C EF + ++K LC G+AN P+GTMA+VLGA AA+L V++P+LPSQ VH P+S LI A E
Sbjct: 16 CTEFFFTEDIMKNLCTYGIANTPIGTMALVLGAAAAILKSVNYPMLPSQAVHYPLSKLIYKAKE 79
BLAST of mRNA_S-ischiensis_contig78.19117.1 vs. uniprot
Match: A0A2D4BNA7_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNA7_PYTIN) HSP 1 Score: 64.7 bits (156), Expect = 2.850e-9 Identity = 45/146 (30.82%), Postives = 84/146 (57.53%), Query Frame = -1
Query: 40 YKSLIETVGDLSLESDDDPERGALLLAESTVKDDIAEMLRLLREEDSQNARLERAVFDDVPSGAAS-ALVAFP---------CVEFVLEKRVVKLLCELGVANRPVGTMAVVLGACAALLGQVSHPLLPSQHVHNPISLLITAAAE 447
Y+S +E V L+ + D LLAES +D + +++ L+ E+S + R A+ D + AA+ A P C+E++L+++++ LLC+ G ++P G M++ + AALL +V+HPLLP++ +H + L+ +A++
Sbjct: 31 YESRVEDV----LQRELDAHEQRRLLAESHTRDSLQKLVVLIVMEESDSDR--HALLLDAQTPAANDASAPSPMHPHESSRQCLEYMLDRQLLPLLCDAGRRDQPCGIMSLAMQFVAALLSRVNHPLLPTREIHESVVALLQSASK 170
BLAST of mRNA_S-ischiensis_contig78.19117.1 vs. uniprot
Match: A0A2D4CAP6_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAP6_PYTIN) HSP 1 Score: 62.4 bits (150), Expect = 6.150e-9 Identity = 39/122 (31.97%), Postives = 74/122 (60.66%), Query Frame = -1
Query: 40 LLAESTVKDDIAEMLRLLREEDSQNARLERAVFDDVPSGAAS-ALVAFP---------CVEFVLEKRVVKLLCELGVANRPVGTMAVVLGACAALLGQVSHPLLPSQHVHNPISLLITAAAE 375
LLAES +D + +++ L+ E+S + R A+ D + AA+ A P C+E++L+++++ LLC+ G ++P G M++ + AALL +V+HPLLP++ +H + L+ +A++
Sbjct: 65 LLAESHTRDSLQKLVVLIVMEESDSDR--HALLLDAQTPAANDASAPSPMHPHESSRQCLEYMLDRQLLPLLCDAGRRDQPCGIMSLAMQFVAALLSRVNHPLLPTREIHESVVALLQSASK 184
BLAST of mRNA_S-ischiensis_contig78.19117.1 vs. uniprot
Match: UPI00033186F3 (protein FAM160B2 n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI00033186F3) HSP 1 Score: 58.2 bits (139), Expect = 5.240e-7 Identity = 34/91 (37.36%), Postives = 50/91 (54.95%), Query Frame = -1
Query: 22 LERAVFDDVPSGAASALVAFPCVEFVLEKRVVKLLCELGVANRPVGTMAVVLGACAALLGQVSHPLLPSQHVHNPISLLITAAAEAGGLRT 294
L+ V+++ AAS A PC+E++L+ ++++ LC LG A P G VL + +L QV HPLL HVH P+ L+ A G T
Sbjct: 67 LDILVYEERQQAAASE--AGPCLEYLLQHKILETLCTLGKAEYPPGMRQQVLQFFSKVLAQVQHPLLHYLHVHRPVQKLLRLGGAAPGSLT 155
BLAST of mRNA_S-ischiensis_contig78.19117.1 vs. uniprot
Match: UPI001B7EFB8A (protein FAM160B1-like isoform X1 n=2 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7EFB8A) HSP 1 Score: 55.5 bits (132), Expect = 4.510e-6 Identity = 28/71 (39.44%), Postives = 40/71 (56.34%), Query Frame = -1
Query: 22 PCVEFVLEKRVVKLLCELGVANRPVGTMAVVLGACAALLGQVSHPLLPSQHVHNPISLLITAAAEAGGLRT 234
PC+E++L+ ++++ LC L A P G VL LLGQ+ PLLP +VH P+ LI E G +T
Sbjct: 77 PCMEYLLQHKILETLCTLAKAGYPPGMKQQVLLLITKLLGQIQQPLLPHINVHRPVQKLIRLCGEGLGSKT 147
BLAST of mRNA_S-ischiensis_contig78.19117.1 vs. uniprot
Match: UPI000642D76E (protein FAM160B2 isoform X1 n=3 Tax=Talpidae TaxID=9373 RepID=UPI000642D76E) HSP 1 Score: 55.1 bits (131), Expect = 6.130e-6 Identity = 32/91 (35.16%), Postives = 48/91 (52.75%), Query Frame = -1
Query: 22 LERAVFDDVPSGAASALVAFPCVEFVLEKRVVKLLCELGVANRPVGTMAVVLGACAALLGQVSHPLLPSQHVHNPISLLITAAAEAGGLRT 294
L+ V+++ AAS A PC+E++L+ ++++ LC LG A P G V + +L QV HPLL HVH P+ L+ G T
Sbjct: 59 LDILVYEERQQAAASE--AGPCLEYLLQHKILETLCTLGKAEYPPGMRQQVFQFFSKVLAQVQHPLLHYLHVHRPVQKLLRLGGTVPGSLT 147
BLAST of mRNA_S-ischiensis_contig78.19117.1 vs. uniprot
Match: UPI0003F07C35 (protein FAM160B1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F07C35) HSP 1 Score: 52.8 bits (125), Expect = 7.130e-6 Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = -1
Query: 67 ESTVKDDIAEMLRLLREEDSQNARLERAVFDDVPSGAASALVAFPCVEFVLEKRVVKLLCELGVANRPVGTMAVVLGACAALLGQVSHPLLPSQHVHNPI 366
E+ + I +ML +L +E++ N D +G PC+E++L+ ++++ L LG A+ P G VVL A LLG+V PLLP +VH P+
Sbjct: 49 ETNIPSHIDQMLDILTQEEANN--------DSDQTG--------PCMEYLLQHKILETLHALGKADCPCGMKQVVLSFFANLLGKVKQPLLPHVNVHRPV 132 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig78.19117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig78.19117.1 >prot_S-ischiensis_contig78.19117.1 ID=prot_S-ischiensis_contig78.19117.1|Name=mRNA_S-ischiensis_contig78.19117.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=150bp KGPLAPRGPQPARLRGGRDEQGDGVVHVLGGQEGVAHLAEERGAGAEHDGback to top mRNA from alignment at S-ischiensis_contig78:527293..527742+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig78.19117.1 ID=mRNA_S-ischiensis_contig78.19117.1|Name=mRNA_S-ischiensis_contig78.19117.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=450bp|location=Sequence derived from alignment at S-ischiensis_contig78:527293..527742+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig78:527293..527742+ >mRNA_S-ischiensis_contig78.19117.1 ID=mRNA_S-ischiensis_contig78.19117.1|Name=mRNA_S-ischiensis_contig78.19117.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=900bp|location=Sequence derived from alignment at S-ischiensis_contig78:527293..527742+ (Schizocladia ischiensis KU_0333)back to top |