mRNA_S-ischiensis_contig78.19071.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig78.19071.1
Unique NamemRNA_S-ischiensis_contig78.19071.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig78.19071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig78contigS-ischiensis_contig78:176778..177144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size367
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817239.8629875-CDS-S-ischiensis_contig78:176777..1771431622817239.8629875-CDS-S-ischiensis_contig78:176777..177143Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 176778..177143 +
1695740961.1392066-CDS-S-ischiensis_contig78:176777..1771431695740961.1392066-CDS-S-ischiensis_contig78:176777..177143Schizocladia ischiensis KU_0333CDSS-ischiensis_contig78 176778..177143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig78.19071.1prot_S-ischiensis_contig78.19071.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig78 176778..177143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig78.19071.1

>prot_S-ischiensis_contig78.19071.1 ID=prot_S-ischiensis_contig78.19071.1|Name=mRNA_S-ischiensis_contig78.19071.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=122bp
QGSCGRASRGRRWWLWLRRREAGRDRPVRQHRWQRRRPARHHPPAGVCGA
PHQQRVRRGKPHQHRGRPAPQAVHRHVGLLGGALHLPRRHQRQGQRRVPP
VDHGRPHLQFHRHHRAAVVVRR
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mRNA from alignment at S-ischiensis_contig78:176778..177144+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig78.19071.1 ID=mRNA_S-ischiensis_contig78.19071.1|Name=mRNA_S-ischiensis_contig78.19071.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=367bp|location=Sequence derived from alignment at S-ischiensis_contig78:176778..177144+ (Schizocladia ischiensis KU_0333)
CAAGGGAGCTGCGGCAGGGCCAGCAGAGGGCGAAGGTGGTGGCTCTGGCT
CCGGAGGAGGGAAGCTGGGCGGGACCGGCCGGTTCGCCAGCACCGCTGGC
AGCGCCGCCGCCCGGCGCGGCACCATCCCCCAGCTGGGGTTTGTGGCGCC
CCGCACCAGCAGCGTGTTCGACGAGGCAAACCTCATCAGCACCGTGGGCG
GCCGGCGCCGCAAGCGGTCCATCGGCATGTCGGGCTCCTGGGAGGAGCTC
TCCATCTCCCCCGGCGGCACCAGCGCCAAGGGCAACGGCGGGTTCCCCCT
GTCGACCACGGGCGACCTCACCTCCAATTCCACCGCCACCACCGCGCTGC
TGTCGTCGTCCGTCGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig78:176778..177144+

>mRNA_S-ischiensis_contig78.19071.1 ID=mRNA_S-ischiensis_contig78.19071.1|Name=mRNA_S-ischiensis_contig78.19071.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=732bp|location=Sequence derived from alignment at S-ischiensis_contig78:176778..177144+ (Schizocladia ischiensis KU_0333)
CAAGGGAGCTGCGGCAGGGCCAGCAGAGGGCGAAGGTGGTGGCTCTGGCT
CCGGAGGAGGGAAGCTGGGCGGGACCGGCCGGTTCGCCAGCACCGCTGGC
AGCGCCGCCGCCCGGCGCGGCACCATCCCCCAGCTGGGGTTTGTGGCGCC
CCGCACCAGCAGCGTGTTCGACGAGGCAAACCTCATCAGCACCGTGGGCG
GCCGGCGCCGCAAGCGGTCCATCGGCATGTCGGGCTCCTGGGAGGAGCTC
TCCATCTCCCCCGGCGGCACCAGCGCCAAGGGCAACGGCGGGTTCCCCCT
GTCGACCACGGGCGACCTCACCTCCAATTCCACCGCCACCACCGCGCTGC
TGTCGTCGTCCGTCGGCAAGGGAGCTGCGGCAGGGCCAGCAGAGGGCGAA
GGTGGTGGCTCTGGCTCCGGAGGAGGGAAGCTGGGCGGGACCGGCCGGTT
CGCCAGCACCGCTGGCAGCGCCGCCGCCCGGCGCGGCACCATCCCCCAGC
TGGGGTTTGTGGCGCCCCGCACCAGCAGCGTGTTCGACGAGGCAAACCTC
ATCAGCACCGTGGGCGGCCGGCGCCGCAAGCGGTCCATCGGCATGTCGGG
CTCCTGGGAGGAGCTCTCCATCTCCCCCGGCGGCACCAGCGCCAAGGGCA
ACGGCGGGTTCCCCCTGTCGACCACGGGCGACCTCACCTCCAATTCCACC
GCCACCACCGCGCTGCTGTCGTCGTCCGTCGG
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