mRNA_S-ischiensis_contig77.19024.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig77.19024.1
Unique NamemRNA_S-ischiensis_contig77.19024.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig77.19024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig77contigS-ischiensis_contig77:334110..335508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size257
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817230.4516644-CDS-S-ischiensis_contig77:334109..3341881622817230.4516644-CDS-S-ischiensis_contig77:334109..334188Schizocladia ischiensis KU_0333CDSS-ischiensis_contig77 334110..334188 +
1695740953.682932-CDS-S-ischiensis_contig77:334109..3341881695740953.682932-CDS-S-ischiensis_contig77:334109..334188Schizocladia ischiensis KU_0333CDSS-ischiensis_contig77 334110..334188 +
1622817230.4645865-CDS-S-ischiensis_contig77:335332..3355081622817230.4645865-CDS-S-ischiensis_contig77:335332..335508Schizocladia ischiensis KU_0333CDSS-ischiensis_contig77 335333..335508 +
1695740953.694793-CDS-S-ischiensis_contig77:335332..3355081695740953.694793-CDS-S-ischiensis_contig77:335332..335508Schizocladia ischiensis KU_0333CDSS-ischiensis_contig77 335333..335508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig77.19024.1prot_S-ischiensis_contig77.19024.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig77 334110..335508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig77.19024.1

>prot_S-ischiensis_contig77.19024.1 ID=prot_S-ischiensis_contig77.19024.1|Name=mRNA_S-ischiensis_contig77.19024.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=85bp
ESAEEEVTVPITMEFENIKTDREELKALVYQEVLHYQKDRQHATPPGGVP
APGGAAGFRGSGAGVAAGADKDNALLAGATGVESG
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mRNA from alignment at S-ischiensis_contig77:334110..335508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig77.19024.1 ID=mRNA_S-ischiensis_contig77.19024.1|Name=mRNA_S-ischiensis_contig77.19024.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1399bp|location=Sequence derived from alignment at S-ischiensis_contig77:334110..335508+ (Schizocladia ischiensis KU_0333)
GAGAGCGCGGAGGAGGAGGTGACGGTGCCCATAACCATGGAGTTCGAGAA
CATCAAGACGGATCGGGAGGAGCTGAAGGGTGAGTACATTAGTGGCGTGT
TGAACTTTGCCATGTAGAGCTCTACTGTAATTATTATTGATGTTATAGTT
ATTTTTTAGGGCTGCCCTTAACGATGGGGTTTGAGAACATCAAGACGGAT
CGGGAGGAGTGCAAGGGTGAGTGATTCATGTAAATTGTAACGAGCTACAA
TCGCACGTGTGTGAGATTTGTGTGTTCTCGTACGAGTAATAGCTTAACAT
CATTAGGAACGCTCGCGCAAAATTTTCACCGTTTTCCCTTCACGCCTGGG
GAAAAGTCGTAGTTTTGCACCGTACGCAAAACTTTATCAGGCGTCGTTTG
CGACTTAACCAATCAACGGCCGGAACGACCGGAAGCAGGGCCCCAACATA
CGGGGTGCGGCACGAGGATTGGTGCCACGGCGCCACGAAAGGGGTGCGAT
TTATGGGTGAAATTTCCGACCCTTTTTCATCGGCACCCTAAAACAGCTCG
ATATTAGTCGATTTCGGTGGCGCAAATTTTCGACTTTGCCCTCGATCCCT
ATATTTTTTAGTGTTTACGGTCGCGCATAATTTCGACCTTTCCCCTCAAT
TTGGGCGTTTGAAATGGTATTAAGGGTGAATGACGTGACGAATTTTGCCG
CGTTTCTTTTTTTTTGCTTTTTAAAAAATTTTGATTGCTGCCCTCATTAG
CGATGGGGTTTGAGACCGTGTCTCAGACAGGTTCCTGGATTCTGGGGCGG
AGAAAGCGATTTTGGGCTGCTTTTGGCACGATTTCGGGCGTTTTTTGGCC
TCTTTGGGGCCGGATTTTGGGCGATCCGCCCACAAAACGGCCCTATCTGA
GACACTGGGTTGAGAGCATCAAGACGGATTCGAGAAGATCTCAAGGGCGC
ATGAACTACGTACATACTTCGAAGTACTTCGCCTATGCTCTGTCCCGACA
TAAGGACGCGAGACCGTGGCCGAAAGGCTACCCTGCGGGGGCTGTCGGCG
GTCCATTTGCATGACAGCCCAGTACATGTACCAGTGCTGCATGCCTGCCT
CGACCTCACCGTCCTCCACCCCTTCCTCCCTCCCTCCCCCCTTGCCCCGT
CCCCCCTCTGCCCCCGTGGCCACATCCGTGCCGCGCCCCACCTAAAAAAA
ATTAAACTCCAAAAAAAAAACAGCCCTCGTCTACCAGGAGGTTCTCCACT
ACCAAAAGGACAGGCAACACGCCACCCCCCCGGGGGGCGTCCCTGCACCC
GGCGGCGCAGCGGGTTTCCGGGGTAGTGGGGCGGGCGTTGCTGCTGGCGC
GGACAAGGACAACGCGCTCCTCGCTGGAGCAACAGGCGTAGAGAGCGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig77:334110..335508+

>mRNA_S-ischiensis_contig77.19024.1 ID=mRNA_S-ischiensis_contig77.19024.1|Name=mRNA_S-ischiensis_contig77.19024.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=510bp|location=Sequence derived from alignment at S-ischiensis_contig77:334110..335508+ (Schizocladia ischiensis KU_0333)
GAGAGCGCGGAGGAGGAGGTGACGGTGCCCATAACCATGGAGTTCGAGAA
CATCAAGACGGATCGGGAGGAGCTGAAGGGAGAGCGCGGAGGAGGAGGTG
ACGGTGCCCATAACCATGGAGTTCGAGAACATCAAGACGGATCGGGAGGA
GCTGAAGGCCCTCGTCTACCAGGAGGTTCTCCACTACCAAAAGGACAGGC
AACACGCCACCCCCCCGGGGGGCGTCCCTGCACCCGGCGGCGCAGCGGGT
TTCCGGGGTAGTGGGGCGGGCGTTGCTGCTGGCGCGGACAAGGACAACGC
GCTCCTCGCTGGAGCAACAGGCGTAGAGAGCGGCCCCTCGTCTACCAGGA
GGTTCTCCACTACCAAAAGGACAGGCAACACGCCACCCCCCCGGGGGGCG
TCCCTGCACCCGGCGGCGCAGCGGGTTTCCGGGGTAGTGGGGCGGGCGTT
GCTGCTGGCGCGGACAAGGACAACGCGCTCCTCGCTGGAGCAACAGGCGT
AGAGAGCGGC
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