mRNA_S-ischiensis_contig77.19000.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig77.19000.1 vs. uniprot
Match: D8LTJ2_ECTSI (Rab7L, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTJ2_ECTSI) HSP 1 Score: 320 bits (820), Expect = 8.600e-100 Identity = 166/226 (73.45%), Postives = 184/226 (81.42%), Query Frame = 3
Query: 318 ARQRPQKPRVLLKIIVLGCSNVGKTSLMKRYVANDFTGLRRPTIGADFMTKEIVVGDQPMLLQIWDTAGQERFHKEALGPGFFRGANAALLVYDVASAKSFEQVAMWREELLVKVDVDPYDFPIVVVGNKVDLEGGVLMDGVHGVDKAVVHKWTTMQGMGHIETSAKDGTGVEVAMEAVAGLALEQKIRRDAVLAANPNKHNSRGAGKVDLTRRGSMDDMKANGCC 995
+RQR KPRVLLKI+VLGCSNVGKTSLMKRY A DFT RRPTIGADFMTKE+V GDQPMLLQIWDTAGQERFH +LG GFFRGANAALLVYDVA A SFEQVAMWREELLV++DVDP+DFPIVV+GNKVDL G+ MDG+HGVDK V KW MQGMGHIETSAKDGTGVEVAM+AVA LALEQK +R+ LA NP+ G +DL + + + GCC
Sbjct: 143 SRQRQMKPRVLLKIVVLGCSNVGKTSLMKRYAAGDFTDYRRPTIGADFMTKEVVEGDQPMLLQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVACAVSFEQVAMWREELLVRLDVDPHDFPIVVIGNKVDLATGLAMDGIHGVDKTRVMKWCEMQGMGHIETSAKDGTGVEVAMQAVAVLALEQKRKRERDLALNPSLG---GGTTLDLADQRARQ-QRTGGCC 364
BLAST of mRNA_S-ischiensis_contig77.19000.1 vs. uniprot
Match: A0A7S2RVV0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVV0_9STRA) HSP 1 Score: 231 bits (588), Expect = 7.270e-67 Identity = 115/179 (64.25%), Postives = 137/179 (76.54%), Query Frame = 3
Query: 342 RVLLKIIVLGCSNVGKTSLMKRYVANDFTGLRRPTIGADFMTKEIVVGDQPMLLQIWDTAGQERFHKEALGPGFFRGANAALLVYDVASAKSFEQVAMWREELLVKVDVDPYDFPIVVVGNKVDLEGGVLMDGVHGVDKAVVHKWTTMQGMGHIETSAKDGTGVEVAMEAVAGLALEQK 878
RV+LKIIVLG SNVGKTSLM+R+ N F+ RR T GADF +K + Q ++LQIWDTAGQERFH LG F+RGA+AALLVYD SA SF+QV WR E+L ++DV P DFP+VVVGNKVD+EG MDG+HGVDKA V +W G GHIETSAKDGTGV+VAMEA+ LAL ++
Sbjct: 4 RVVLKIIVLGSSNVGKTSLMRRFCKNSFSEARRATTGADFSSKRMSFAGQEVMLQIWDTAGQERFHHGTLGGAFYRGADAALLVYDATSASSFKQVENWRSEVLSRIDVAPGDFPLVVVGNKVDMEGNTPMDGIHGVDKAAVTEWCRAHGTGHIETSAKDGTGVQVAMEAIGTLALARR 182
BLAST of mRNA_S-ischiensis_contig77.19000.1 vs. uniprot
Match: F0Y7J9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7J9_AURAN) HSP 1 Score: 187 bits (475), Expect = 1.920e-51 Identity = 102/182 (56.04%), Postives = 126/182 (69.23%), Query Frame = 3
Query: 348 LLKIIVLGCSNVGKTSLMKRYVANDFTGLRRPTIGADFMTKEIVVGDQPMLLQIWDTAGQERFHKEALGPGFFRGANAALLVYDVASAKSFEQVAMWREELLVKVDVDPYDFPIVVVGNKVDLEGGVLMDGVHGVDKAVVHKWTTMQGMGHIETSAKDGTGVEVAMEAVAGLALEQKIRRDA 893
LLK +VLG SNVGKTSL+ ++V FT RR T GADF +K + +GD+ + L IWDTAGQERFH LG F+RGA+AALLVYD ++FEQ+ MWR ELL ++D P +FP+VVVGNKVD+ + ++A V +W G+G TSAKDGTGV VAMEAVA LALE K RR A
Sbjct: 10 LLKCVVLGSSNVGKTSLLMQFVHGKFTPARRVTTGADFASKVLHLGDREVRLVIWDTAGQERFHHGTLGGAFYRGADAALLVYDTTDIRTFEQIEMWRRELLQRIDGPPEEFPVVVVGNKVDVP-----NKTREHEQAAVVRWCRDLGIGLCLTSAKDGTGVAVAMEAVAMLALENKRRRQA 186
BLAST of mRNA_S-ischiensis_contig77.19000.1 vs. uniprot
Match: A0A8J2S8J0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S8J0_9STRA) HSP 1 Score: 176 bits (447), Expect = 7.090e-47 Identity = 99/188 (52.66%), Postives = 120/188 (63.83%), Query Frame = 3
Query: 348 LLKIIVLGCSNVGKTSLMKRYVANDFTGLRRPTIGADFMTKEIVVGDQPMLLQIWDTAGQERFHKEALGPGFFRGANAALLVYDVASAKSFEQVAMWREELLVKVDVDPYDFPIVVVGNKVDLEGGVLMDGVHGVDKAVVHKWTTMQGMGHIETSAKDGTGVEVAMEAVAGLALEQKIRRDAVLAANP 911
+LK +VLG SNVGK+SL++RY N F RR T+GADF +K I VG++ + L IWDTAGQERFH +G F+RGA+ ALLVYD +F QV +WR ELL +VD P FPIV VGNK+DL D D+ W G+G + SA DGTGV VAMEAVA LALE K RR A+ P
Sbjct: 59 MLKCVVLGSSNVGKSSLLERYTKNSFRPERRVTLGADFASKVIEVGEERVRLVIWDTAGQERFHHGTIGGAFYRGADGALLVYDTTDFATFAQVELWRRELLQRVD-GPEAFPIVCVGNKMDLPCPTRSD-----DEKAAEAWCAAHGVGLLFASACDGTGVAVAMEAVAALALENKKRRQALGVTKP 240
BLAST of mRNA_S-ischiensis_contig77.19000.1 vs. uniprot
Match: A0A7S3K3U1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3U1_9STRA) HSP 1 Score: 174 bits (441), Expect = 1.570e-46 Identity = 99/225 (44.00%), Postives = 134/225 (59.56%), Query Frame = 3
Query: 324 QRPQKPRVLLKIIVLGCSNVGKTSLMKRYVANDFTGLRRPTIGADFMTKEIVVGD-QPMLLQIWDTAGQERFHKEALGPGFFRGANAALLVYDVASAKSFEQVAMWREELLVKVDVDPYDFPIVVVGNKVDLEGGVLMDGVHGVDKAVVHKWTTMQGMGHIETSAKDGTGVEVAMEAVAGLALEQKIRRDAVLAANPNKHNSRGAGKVDLTRRGSMDDMKANGCC 995
++ ++ LLK +VLG SNVGKTSL+ +++ F RR T GADF ++ + + + + L IWDTAGQERFH LG F+RGA+ ALLVYD +SFEQ+ MWR ELL +V P +FP+VVVGNK+D+ + A V KW G+G TSAKDGTGV AMEA+A LA E K RR ++ N ++ + RG++D + CC
Sbjct: 3 KKEERTTTLLKCVVLGSSNVGKTSLLTQFIHGRFDSTRRATTGADFASRVLEIDQGRKIRLVIWDTAGQERFHHGTLGNAFYRGADGALLVYDTTDIRSFEQIEMWRGELLQRVQGPPDEFPVVVVGNKIDIPSET-----RDSEFAAVQKWCRDLGIGICLTSAKDGTGVLAAMEAIAHLAYEAKQRRGKSSHSSLNDRDTLALDNIRRNNRGAVDSSSS--CC 220
BLAST of mRNA_S-ischiensis_contig77.19000.1 vs. uniprot
Match: A4RVV4_OSTLU (Uncharacterized protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4RVV4_OSTLU) HSP 1 Score: 170 bits (431), Expect = 2.630e-45 Identity = 98/200 (49.00%), Postives = 128/200 (64.00%), Query Frame = 3
Query: 342 RVLLKIIVLGCSNVGKTSLMKRYVANDFTGLRRPTIGADFMTKEIVVGDQPMLLQIWDTAGQERFHKEALGPGFFRGANAALLVYDVASAKSFEQVAMWREELLVKVDV-DPYDFPIVVVGNKVDLEGGVLMDGVHGVDKAVVHKWTTMQG-MGHIETSAKDGTGVEVAMEAVAGLALEQKIRRDAVLAANPNKHNSRGA 935
R LLK+I+LG S VGKTSLM +YV N F+ + TIGADFMTKEIV+ D + LQIWDTAGQERF ++LG F+RGA+ + VYDV SAKSFE + WR E LV+ DP FP+VVVGNK+D+E G D + + W T +G + H E SAK+ V+ A EAVA A++ + + V + ++RGA
Sbjct: 5 RTLLKVIILGDSGVGKTSLMAQYVNNKFSKQYKATIGADFMTKEIVIDDTVVTLQIWDTAGQERF--QSLGVSFYRGADCVMCVYDVNSAKSFESLENWRNEFLVQASPSDPEKFPVVVVGNKIDVEDG--KDSKRVISEKKAKSWCTSKGGLMHFECSAKEDINVDAAFEAVARFAVQNEDAEEDVYLPDTVSIDTRGA 200
BLAST of mRNA_S-ischiensis_contig77.19000.1 vs. uniprot
Match: A0A482SWX8_9ARCH (GTP-binding protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SWX8_9ARCH) HSP 1 Score: 168 bits (425), Expect = 1.530e-44 Identity = 98/202 (48.51%), Postives = 127/202 (62.87%), Query Frame = 3
Query: 393 SLMKRYVANDFTGLRRPTIGADFMTKEIVVGDQPMLLQIWDTAGQERFHKEALGPGFFRGANAALLVYDVASAKSFEQVAMWREELLVKVDVDPYDFPIVVVGNKVDLEGGVLMDGVHGVDKAVVHKWTTMQGMGHIETSAKDGTGVEVAMEAVAGLALEQKIRRDAVLAANPNKHNSRGAGKVDLTRRGSMDDMKANGCCG 998
S R+ F+GLRRPT+G+DF TK++VV D + LQIWDTAGQERF++ ++G FFRGA+ ALLVYDV KS EQ+A WREE L + D Y FP+VV+GNK+D+ + ++ VD + V W GHIETSAKDG GVE AM A+ GLALE R N + + G KV+L S ++K +GC G
Sbjct: 9 SSFDRFATGRFSGLRRPTVGSDFQTKKMVVHDVEVTLQIWDTAGQERFNQGSIGSAFFRGAHGALLVYDVNDEKSIEQIAQWREECLSRQLEDEY-FPMVVIGNKIDVREKIPVE--RRVDVSGVLTWCREHSYGHIETSAKDGHGVEAAMLAITGLALENMRNRQ-----RRNVNAAMGGEKVNLE---SKYEVKKSGCEG 199
BLAST of mRNA_S-ischiensis_contig77.19000.1 vs. uniprot
Match: A0A454XN49_OSTTA (Apospory-associated protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A454XN49_OSTTA) HSP 1 Score: 167 bits (422), Expect = 4.980e-44 Identity = 99/183 (54.10%), Postives = 119/183 (65.03%), Query Frame = 3
Query: 336 KPRVLLKIIVLGCSNVGKTSLMKRYVANDFTGLRRPTIGADFMTKEIVVGDQPMLLQIWDTAGQERFHKEALGPGFFRGANAALLVYDVASAKSFEQVAMWREELLVKVDV-DPYDFPIVVVGNKVDLEGGVLMDGVHGVDKAVVHKWTTMQG-MGHIETSAKDGTGVEVAMEAVAGLALEQK 878
K R LLK+I+LG S VGKTSLM +YV N F+ + TIGADFMTKEI V D + LQIWDTAGQERF ++LG F+RGA+ + VYDV SAKSFE + WR E LV+ DP FPIVVVGNK+D+E G V KA W T +G + H E SAK+ V A EAVA A+E +
Sbjct: 4 KKRTLLKVIILGDSGVGKTSLMSQYVNNKFSKQYKATIGADFMTKEITVDDTVVTLQIWDTAGQERF--QSLGVSFYRGADCVMCVYDVNSAKSFESLENWRNEFLVQASPSDPDKFPIVVVGNKIDVEEGKESKRVISEKKA--KSWCTSKGGLMHFECSAKEDINVTAAFEAVARFAVESE 182
BLAST of mRNA_S-ischiensis_contig77.19000.1 vs. uniprot
Match: A0A1U8PAD1_GOSHI (ras-related protein Rab7-like n=1 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8PAD1_GOSHI) HSP 1 Score: 163 bits (413), Expect = 5.940e-43 Identity = 92/183 (50.27%), Postives = 120/183 (65.57%), Query Frame = 3
Query: 330 PQKPRVLLKIIVLGCSNVGKTSLMKRYVANDFTGLRRPTIGADFMTKEIVVGDQPMLLQIWDTAGQERFHKEALGPGFFRGANAALLVYDVASAKSFEQVAMWREELLVKVDV-DPYDFPIVVVGNKVDLEGGVLMDGVHGVDKAVVHKWTTMQG-MGHIETSAKDGTGVEVAMEAVAGLALE 872
P + R LLK+I+LG S VGKTSLM +YV F+ + TIGADF+TKE+ D+ LQIWDTAGQERF ++LG F+RGA+ +LVYDV S KSF+ + WREE LV+ DP +FP VV+GNKVD+EGG GV + W +G + + ETSAK+G VE A + +A AL+
Sbjct: 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF--QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLVQASPSDPENFPFVVLGNKVDVEGG----NSRGVSEKKARAWCASKGNIPYFETSAKEGVNVEEAFQCIAKNALK 178
BLAST of mRNA_S-ischiensis_contig77.19000.1 vs. uniprot
Match: A0A0J9XGI8_GEOCN (Similar to Saccharomyces cerevisiae YML001W YPT7 Rab family GTPase n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XGI8_GEOCN) HSP 1 Score: 163 bits (413), Expect = 8.290e-43 Identity = 89/185 (48.11%), Postives = 127/185 (68.65%), Query Frame = 3
Query: 342 RVLLKIIVLGCSNVGKTSLMKRYVANDFTGLRRPTIGADFMTKEIVVGDQPMLLQIWDTAGQERFHKEALGPGFFRGANAALLVYDVASAKSFEQVAMWREELLVKVDV-DPYDFPIVVVGNKVDLEGGVLMDGVHGVDKAVVHKWTTMQG-MGHIETSAKDGTGVEVAMEAVAGLALEQKIRRD 890
+ LLK+I+LG S VGKTSLM+++V FTG + TIGADF+TKE+++ D+ + LQ+WDTAGQERF ++LG F+RGA+ +LVYDV +AKSFE + +WR+E L++ + DP +FP VV+GNK+D+E D V K + +G + + ETSAK+ GVE A E +A AL Q+ +D
Sbjct: 6 KALLKVIILGDSGVGKTSLMQQFVNKKFTGQYKATIGADFLTKELMLDDRKVTLQLWDTAGQERF--QSLGVAFYRGADCCVLVYDVNNAKSFETLEVWRDEFLIQANPNDPENFPFVVLGNKIDVE-----DNKRQVPKKKAQAYCASKGNLPYFETSAKEAVGVEQAFEVIARNALAQEEAQD 183 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig77.19000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig77.19000.1 >prot_S-ischiensis_contig77.19000.1 ID=prot_S-ischiensis_contig77.19000.1|Name=mRNA_S-ischiensis_contig77.19000.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=297bp MVVDPDLQRAGARQARASAQAKGAPENRGKGKEPEGVGDDGATSTQTPNQback to top mRNA from alignment at S-ischiensis_contig77:122687..131550+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig77.19000.1 ID=mRNA_S-ischiensis_contig77.19000.1|Name=mRNA_S-ischiensis_contig77.19000.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=8864bp|location=Sequence derived from alignment at S-ischiensis_contig77:122687..131550+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig77:122687..131550+ >mRNA_S-ischiensis_contig77.19000.1 ID=mRNA_S-ischiensis_contig77.19000.1|Name=mRNA_S-ischiensis_contig77.19000.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1782bp|location=Sequence derived from alignment at S-ischiensis_contig77:122687..131550+ (Schizocladia ischiensis KU_0333)back to top |