mRNA_S-ischiensis_contig76.18950.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig76.18950.1
Unique NamemRNA_S-ischiensis_contig76.18950.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig76.18950.1 vs. uniprot
Match: Q2NPG0_9CAUD (HNH endonuclease family protein n=1 Tax=Xanthomonas virus OP1 TaxID=329254 RepID=Q2NPG0_9CAUD)

HSP 1 Score: 72.0 bits (175), Expect = 3.690e-13
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    1 LHHRDGNKANNSTRNLEFVSQVANCRKREGRQSNNTSGVNGVHWHKDKRKWQADVPVDGRRKHLGLFVVKSDAKKARCAAEKKY 252
            L H DG K NN   NL   S   N + R G+ SNNTSGV GV+WHK+ +KW+A + +DG++  LGLF    +A  AR AA+ ++
Sbjct:   76 LDHIDGCKTNNRISNLRECSNAENQQNR-GKSSNNTSGVPGVYWHKEAKKWRARIMLDGKQISLGLFNTLEEAAAAREAAKAQH 158          
BLAST of mRNA_S-ischiensis_contig76.18950.1 vs. uniprot
Match: Q7Y5F9_9CAUD (57R n=1 Tax=Xanthomonas virus Xp10 TaxID=232237 RepID=Q7Y5F9_9CAUD)

HSP 1 Score: 71.6 bits (174), Expect = 5.190e-13
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    1 LHHRDGNKANNSTRNLEFVSQVANCRKREGRQSNNTSGVNGVHWHKDKRKWQADVPVDGRRKHLGLFVVKSDAKKARCAAEKKY 252
            L H +G K +N   NL   +   N + R G+ SNNTSGV GV WHK ++KW+A + V+G+  HLG F    +A  AR AA++KY
Sbjct:   76 LDHINGIKTDNRIVNLRECTDAENKQNR-GKSSNNTSGVPGVGWHKQRKKWRAQIKVNGKNIHLGWFDTIEEAAAARAAAKEKY 158          
BLAST of mRNA_S-ischiensis_contig76.18950.1 vs. uniprot
Match: A5H1K2_9CAUD (p31.1 n=1 Tax=Xanthomonas virus Xop411 TaxID=470314 RepID=A5H1K2_9CAUD)

HSP 1 Score: 66.6 bits (161), Expect = 3.760e-11
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    1 LHHRDGNKANNSTRNLEFVSQVANCRKREGRQSNNTSGVNGVHWHKDKRKWQADVPVDGRRKHLGLFVVKSDAKKARCAAEKKY 252
            + H +G K +N   NL   S   N ++  G++S+NTSGV GV WHK   KW+A + V+G++ +LGLF   ++A  AR AA+++Y
Sbjct:   67 IDHINGQKDDNRIDNLRECSNAEN-QQNAGKRSDNTSGVQGVGWHKQAGKWRARIKVNGKQINLGLFHTLAEAAAARAAAKQQY 149          
BLAST of mRNA_S-ischiensis_contig76.18950.1 vs. uniprot
Match: A0A8G1I690_9CAUD (Homing endonuclease n=1 Tax=Klebsiella phage vB_KpnS_MK54 TaxID=2783667 RepID=A0A8G1I690_9CAUD)

HSP 1 Score: 66.2 bits (160), Expect = 6.530e-11
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 LHHRDGNKANNSTRNLEFVSQVANCRKREGRQSNNTSGVNGVHWHKDKRKWQADVPVDGRRKHLGLFVVKSDAKKARCAAEKKY 252
            + H + N  +N   NL   ++  N  K + + S+N+SGV GVHW KDKRKWQA + V+ +  HLG F    DA+ AR  AE++Y
Sbjct:   81 IDHINHNPGDNRIENLRLTNRGGNL-KNKSKYSSNSSGVTGVHWRKDKRKWQAKIRVNKKFIHLGYFNDILDAELARKKAEEEY 163          
BLAST of mRNA_S-ischiensis_contig76.18950.1 vs. uniprot
Match: UPI000D59E02B (HNH endonuclease n=1 Tax=Morganella morganii TaxID=582 RepID=UPI000D59E02B)

HSP 1 Score: 64.7 bits (156), Expect = 2.260e-10
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 1
Query:    1 LHHRDGNKANNSTRNLEFVSQVANCRKREGRQSNNTSGVNGVHWHKDKRKWQADVPVDGRRKHLGLFVVKSDAKKARCAAEKK 249
            + H +GNK++N   NL   +   N R R+  ++N TSGV GV+W ++K+KW+A +  DG+ K+LG F   S A +A C A ++
Sbjct:   75 IDHINGNKSDNRISNLRLATHQENMRNRKMPKTN-TSGVKGVYWDREKKKWRAGLRFDGKSKNLGYFTDLSVAARAVCKAREE 156          
BLAST of mRNA_S-ischiensis_contig76.18950.1 vs. uniprot
Match: Q7Y5G7_9CAUD (49L n=1 Tax=Xanthomonas virus Xp10 TaxID=232237 RepID=Q7Y5G7_9CAUD)

HSP 1 Score: 63.5 bits (153), Expect = 7.320e-10
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1
Query:    1 LHHRDGNKANNSTRNLEFVSQVANCRKREGRQSNNTSGVNGVHWHKDKRKWQADVPVDGRRKHLGLFVVKSDAKKARCAAEKKY 252
            L H  G + +N   NL   ++  N + R G  SNNTSGV GV WHK  +KW+A + V G+   LG F    +A  AR AA+++Y
Sbjct:   78 LDHISGQRDDNRFSNLRECNKSENGQNR-GMSSNNTSGVQGVCWHKQTKKWRARIMVQGKHISLGYFTTIEEAAAARAAAKQQY 160          
BLAST of mRNA_S-ischiensis_contig76.18950.1 vs. uniprot
Match: A0A2A3B879_9HYPH (Uncharacterized protein n=1 Tax=Mesorhizobium sp. WSM3866 TaxID=422271 RepID=A0A2A3B879_9HYPH)

HSP 1 Score: 63.2 bits (152), Expect = 1.160e-9
Identity = 33/87 (37.93%), Postives = 49/87 (56.32%), Query Frame = 1
Query:    1 LHHRDGNKANNSTRNLEFVSQVANCR---KREGRQSNNTSGVNGVHWHKDKRKWQADVPVDGRRKHLGLFVVKSDAKKARCAAEKKY 252
            + H +G+  +N   NL  VS + NCR   +R  +     SGVNGV+WHK  RKW A + ++G+  +LG +    +A + R  AEK Y
Sbjct:   79 IDHINGDGKDNRIENLRLVSHLENCRNLGRRLPKNPERDSGVNGVYWHKQSRKWMARIKINGKWIYLGTYSHLDEAVRIRKDAEKAY 165          
BLAST of mRNA_S-ischiensis_contig76.18950.1 vs. uniprot
Match: UPI001573DCA1 (HNH endonuclease n=1 Tax=Agrobacterium rhizogenes TaxID=359 RepID=UPI001573DCA1)

HSP 1 Score: 62.0 bits (149), Expect = 3.160e-9
Identity = 33/84 (39.29%), Postives = 46/84 (54.76%), Query Frame = 1
Query:    1 LHHRDGNKANNSTRNLEFVSQVANCRKREGRQSNNTSGVNGVHWHKDKRKWQADVPVDGRRKHLGLFVVKSDAKKARCAAEKKY 252
            + H + N+++N   NL    ++ N        SNNTSG+ GVHW  D  KW+A + V G  KHLG F     A  AR AA+++Y
Sbjct:   89 IDHLNHNRSDNRWENLREADRITNGHNMS-LNSNNTSGITGVHWRADAGKWRARIQVSGSWKHLGYFDTIEAAAAARKAADREY 171          
BLAST of mRNA_S-ischiensis_contig76.18950.1 vs. uniprot
Match: UPI001BCDC1EA (HNH endonuclease n=3 Tax=Enterobacter TaxID=547 RepID=UPI001BCDC1EA)

HSP 1 Score: 62.0 bits (149), Expect = 3.480e-9
Identity = 36/87 (41.38%), Postives = 47/87 (54.02%), Query Frame = 1
Query:    1 LHHRDGNKANNSTRNLEFVSQVANCRKR---EGRQSNNTSGVNGVHWHKDKRKWQADVPVDGRRKHLGLFVVKSDAKKARCAAEKKY 252
            + H DGN+ANNS RNL  V++  N   R    G    N +G +GV WHK   KW A +    +  +LG+F    DA  AR AAE K+
Sbjct:   92 IDHIDGNRANNSIRNLREVTREQNHMNRALINGPSRTNKTGCHGVTWHKKSGKWMAKIIYQNKSHYLGIFDDVEDAISARKAAEIKF 178          
BLAST of mRNA_S-ischiensis_contig76.18950.1 vs. uniprot
Match: R9TPQ7_9CAUD (HNH endonuclease n=3 Tax=Siphoviridae TaxID=10699 RepID=R9TPQ7_9CAUD)

HSP 1 Score: 61.2 bits (147), Expect = 3.780e-9
Identity = 36/84 (42.86%), Postives = 47/84 (55.95%), Query Frame = 1
Query:    1 LHHRDGNKANNSTRNLEFVSQVANCRKREGRQSNNTSGVNGVHWHKDKRKWQADVPVDGRRKHLGLFVVKSDAKKARCAAEKKY 252
            + H D NK NN   NL  V+   N    + R +N  SGV GV W K  +KW +++ VDG + HLGLF   + A +AR  AE KY
Sbjct:   63 IDHIDHNKTNNKIDNLRLVTPKENNHNMKFRVTNK-SGVTGVSWDKQHKKWASNIKVDGVKIHLGLFSDLNMAAEARRKAEVKY 145          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig76.18950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q2NPG0_9CAUD3.690e-1346.43HNH endonuclease family protein n=1 Tax=Xanthomona... [more]
Q7Y5F9_9CAUD5.190e-1345.2457R n=1 Tax=Xanthomonas virus Xp10 TaxID=232237 Re... [more]
A5H1K2_9CAUD3.760e-1141.67p31.1 n=1 Tax=Xanthomonas virus Xop411 TaxID=47031... [more]
A0A8G1I690_9CAUD6.530e-1142.86Homing endonuclease n=1 Tax=Klebsiella phage vB_Kp... [more]
UPI000D59E02B2.260e-1039.76HNH endonuclease n=1 Tax=Morganella morganii TaxID... [more]
Q7Y5G7_9CAUD7.320e-1041.6749L n=1 Tax=Xanthomonas virus Xp10 TaxID=232237 Re... [more]
A0A2A3B879_9HYPH1.160e-937.93Uncharacterized protein n=1 Tax=Mesorhizobium sp. ... [more]
UPI001573DCA13.160e-939.29HNH endonuclease n=1 Tax=Agrobacterium rhizogenes ... [more]
UPI001BCDC1EA3.480e-941.38HNH endonuclease n=3 Tax=Enterobacter TaxID=547 Re... [more]
R9TPQ7_9CAUD3.780e-942.86HNH endonuclease n=3 Tax=Siphoviridae TaxID=10699 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig76contigS-ischiensis_contig76:539496..539902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score78.2
Seed ortholog evalue2.1e-12
Seed eggNOG ortholog1160707.AJIK01000051_gene1696
EggNOG free text desc.HNH endonuclease
EggNOG OGs1VP2W@1239,2E2AR@1,309HC@2,4IRVU@91061
COG Functional cat.L
Best tax levelBacilli
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size407
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817227.8075912-CDS-S-ischiensis_contig76:539495..5397561622817227.8075912-CDS-S-ischiensis_contig76:539495..539756Schizocladia ischiensis KU_0333CDSS-ischiensis_contig76 539496..539756 +
1695740951.6358972-CDS-S-ischiensis_contig76:539495..5397561695740951.6358972-CDS-S-ischiensis_contig76:539495..539756Schizocladia ischiensis KU_0333CDSS-ischiensis_contig76 539496..539756 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817227.8210022-UTR-S-ischiensis_contig76:539756..5399021622817227.8210022-UTR-S-ischiensis_contig76:539756..539902Schizocladia ischiensis KU_0333UTRS-ischiensis_contig76 539757..539902 +
1695740951.6488357-UTR-S-ischiensis_contig76:539756..5399021695740951.6488357-UTR-S-ischiensis_contig76:539756..539902Schizocladia ischiensis KU_0333UTRS-ischiensis_contig76 539757..539902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig76.18950.1prot_S-ischiensis_contig76.18950.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig76 539496..539756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig76.18950.1

>prot_S-ischiensis_contig76.18950.1 ID=prot_S-ischiensis_contig76.18950.1|Name=mRNA_S-ischiensis_contig76.18950.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=87bp
LHHRDGNKANNSTRNLEFVSQVANCRKREGRQSNNTSGVNGVHWHKDKRK
WQADVPVDGRRKHLGLFVVKSDAKKARCAAEKKYWE*
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mRNA from alignment at S-ischiensis_contig76:539496..539902+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig76.18950.1 ID=mRNA_S-ischiensis_contig76.18950.1|Name=mRNA_S-ischiensis_contig76.18950.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=407bp|location=Sequence derived from alignment at S-ischiensis_contig76:539496..539902+ (Schizocladia ischiensis KU_0333)
CTCCACCACAGGGATGGCAACAAGGCCAACAACAGCACCCGCAACCTGGA GTTTGTCTCCCAGGTGGCCAACTGCCGCAAGCGGGAGGGCCGCCAGTCCA ACAACACCAGCGGGGTCAATGGCGTGCACTGGCACAAGGACAAGAGGAAG TGGCAGGCCGACGTCCCTGTAGACGGCAGGCGCAAGCACCTGGGCCTCTT TGTGGTCAAGAGCGACGCCAAAAAGGCCCGTTGCGCTGCGGAGAAAAAGT ACTGGGAGTAGTCGGGTGGCAATTGGTAGGGCGTGTTCGTAGTTTGGGCG GGTAGAGCAGGGGTTGGTTGTGTATCGGTGGTCGTCGGGCAGAGCCCAGG AAGCCCCCCGACACCTGTCGCCACGGCAGAGGGCACCGTGACCTCGTTGT CGTGGTT
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Coding sequence (CDS) from alignment at S-ischiensis_contig76:539496..539902+

>mRNA_S-ischiensis_contig76.18950.1 ID=mRNA_S-ischiensis_contig76.18950.1|Name=mRNA_S-ischiensis_contig76.18950.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=522bp|location=Sequence derived from alignment at S-ischiensis_contig76:539496..539902+ (Schizocladia ischiensis KU_0333)
CTCCACCACAGGGATGGCAACAAGGCCAACAACAGCACCCGCAACCTGGA
GTTTGTCTCCCAGGTGGCCAACTGCCGCAAGCGGGAGGGCCGCCAGTCCA
ACAACACCAGCGGGGTCAATGGCGTGCACTGGCACAAGGACAAGAGGAAG
TGGCAGGCCGACGTCCCTGTAGACGGCAGGCGCAAGCACCTGGGCCTCTT
TGTGGTCAAGAGCGACGCCAAAAAGGCCCGTTGCGCTGCGGAGAAAAAGT
ACTGGGAGTAGCTCCACCACAGGGATGGCAACAAGGCCAACAACAGCACC
CGCAACCTGGAGTTTGTCTCCCAGGTGGCCAACTGCCGCAAGCGGGAGGG
CCGCCAGTCCAACAACACCAGCGGGGTCAATGGCGTGCACTGGCACAAGG
ACAAGAGGAAGTGGCAGGCCGACGTCCCTGTAGACGGCAGGCGCAAGCAC
CTGGGCCTCTTTGTGGTCAAGAGCGACGCCAAAAAGGCCCGTTGCGCTGC
GGAGAAAAAGTACTGGGAGTAG
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