mRNA_S-ischiensis_contig73.18615.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig73.18615.1
Unique NamemRNA_S-ischiensis_contig73.18615.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig73.18615.1 vs. uniprot
Match: D8LP48_ECTSI (EsV-1-8 n=2 Tax=root TaxID=1 RepID=D8LP48_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 5.670e-5
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 3 
Query: 1281 RTPAQVIGRAVSANDRNPAVEARITELLQNAPSDRAWRHRGWLVMLRA 1424
            +TPA  +GR     + +PAV  R+  LL NAP DRAWR RGWLVMLRA
Sbjct:  381 KTPADYLGRI---RNLDPAVAERVRHLLVNAPKDRAWRRRGWLVMLRA 425
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig73.18615.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LP48_ECTSI5.670e-558.33EsV-1-8 n=2 Tax=root TaxID=1 RepID=D8LP48_ECTSI[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig73contigS-ischiensis_contig73:63777..65450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1575
Cds size600
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig73.18615.1prot_S-ischiensis_contig73.18615.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig73 64005..64703 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817201.6378455-UTR-S-ischiensis_contig73:63776..640041622817201.6378455-UTR-S-ischiensis_contig73:63776..64004Schizocladia ischiensis KU_0333UTRS-ischiensis_contig73 63777..64004 +
1695740931.6738288-UTR-S-ischiensis_contig73:63776..640041695740931.6738288-UTR-S-ischiensis_contig73:63776..64004Schizocladia ischiensis KU_0333UTRS-ischiensis_contig73 63777..64004 +
1622817201.6887214-UTR-S-ischiensis_contig73:64703..654501622817201.6887214-UTR-S-ischiensis_contig73:64703..65450Schizocladia ischiensis KU_0333UTRS-ischiensis_contig73 64704..65450 +
1695740931.7143624-UTR-S-ischiensis_contig73:64703..654501695740931.7143624-UTR-S-ischiensis_contig73:64703..65450Schizocladia ischiensis KU_0333UTRS-ischiensis_contig73 64704..65450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817201.6507044-CDS-S-ischiensis_contig73:64004..640461622817201.6507044-CDS-S-ischiensis_contig73:64004..64046Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 64005..64046 +
1695740931.6874847-CDS-S-ischiensis_contig73:64004..640461695740931.6874847-CDS-S-ischiensis_contig73:64004..64046Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 64005..64046 +
1622817201.667728-CDS-S-ischiensis_contig73:64145..647031622817201.667728-CDS-S-ischiensis_contig73:64145..64703Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 64146..64703 +
1695740931.7008302-CDS-S-ischiensis_contig73:64145..647031695740931.7008302-CDS-S-ischiensis_contig73:64145..64703Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 64146..64703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig73.18615.1

>prot_S-ischiensis_contig73.18615.1 ID=prot_S-ischiensis_contig73.18615.1|Name=mRNA_S-ischiensis_contig73.18615.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=200bp
MCSGSSGVGSGLGQGGVDAAVLRDAKIVDLLRRHSTPEQWSKWLATPLDL
AARAGNLSVVEALLELGANVNGAVCKGGKSPIHLAAAGGHTLVLQAVLRA
GADVNARDGEGWTALHGAAGNGHLTAVEALLEAGAAAHAKTAEVHEWTAL
HRACWHGHSAVVQALLKADVTRTSDSTLCFGRTKVPAPGIWPLKGSMQK*
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mRNA from alignment at S-ischiensis_contig73:63777..65450+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig73.18615.1 ID=mRNA_S-ischiensis_contig73.18615.1|Name=mRNA_S-ischiensis_contig73.18615.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1674bp|location=Sequence derived from alignment at S-ischiensis_contig73:63777..65450+ (Schizocladia ischiensis KU_0333)
AAGGGCCCCCCTGCAGGCAACTGGTCACTTGCAGGTGCTCCTGGTGGCTG
CAGAGGACCGTTTTTGTCGGCTCTGTGTTTGCGGGGGCGGGTGGTGGGCA
ACCAGCCCCTGGGTTGAGGAGGAGGGGCGTGCTACCCCCGGGGACGGGGT
CAGGGTGTTCGACGCACACTGTGATGGTGCCTGATTGAGTGACAGCGGCG
GCGTCTACCCCGTGAGATCGTCTCTCTGATGTGTTCGGGATCTTCTGGAG
TCGGCTCGGGATTGGGCCAGGTGAGTCGACTGGAACACCCGTTGAGTGAA
ACGAAGGGCGGGTGTTTTTCTTCCACGAGCGAACCTTTTGACAATGATTC
CCGTCACCCTGACGAGCAGGGAGGAGTGGATGCTGCAGTACTGCGGGACG
CGAAGATCGTGGACCTTCTGCGGCGCCACTCGACCCCAGAACAGTGGAGC
AAGTGGCTGGCCACCCCACTCGACCTCGCAGCCAGGGCGGGAAACTTGAG
CGTGGTTGAAGCTCTTTTGGAGTTGGGGGCAAACGTGAACGGGGCAGTCT
GTAAGGGGGGCAAAAGCCCCATCCACCTCGCGGCTGCGGGGGGGCACACG
CTTGTCCTGCAGGCAGTGCTGCGGGCTGGGGCGGACGTCAACGCCAGGGA
TGGAGAAGGATGGACAGCTCTCCACGGGGCTGCTGGCAACGGCCATCTGA
CGGCGGTGGAGGCACTGCTGGAGGCAGGGGCTGCGGCACATGCCAAGACA
GCAGAGGTCCACGAATGGACCGCGCTCCACCGGGCTTGTTGGCACGGCCA
CTCCGCCGTGGTGCAAGCGCTGCTCAAGGCTGACGTCACCCGGACATCCG
ACTCAACGCTTTGCTTTGGAAGAACCAAGGTGCCAGCCCCCGGCATCTGG
CCGCTGAAGGGGAGCATGCAGAAGTGACAACACAGCTGCTGGATGCGGGT
GCCGCCGTCAACGCCGCGCACGCATCGGGGCATACAGCGCTCCACTTTGC
CGCGCAGTCTGGCCATGCGGAGGTTGTGCAGCGGCTGCTCGATGCCGGTG
CCCTCGTGGAGGCCGCAACCGATACCTATCTGAGTACACCCTTGCTGATG
GCAGCAAAACGCGGCTGCGTGGGGTCACTGAAGTGTCTGCTGCATGCGGG
GGCGAACAATGAGGCCAGAACATCTGATGGCTTCACAACTCTCCACATGG
CTGACGCACGGGGGCATCAAGAGGCAGCCAAGGCTCTTCTGGAGGCAGGT
GCCGATGTTTGGGCGCGTGCCAGCAATGGAAGTTCCCCCCTTCACACAGC
ATGCATGTGTGCCAAAGAAGCGGCCGTGGAGGTCCTCCTTTGTTTTGCGG
CGGATGAGCTGGCCACGGACATCAGCGGCCGCACGCCCGCCCAAGTCATT
GGCCGCGCAGTAAGCGCCAATGACCGGAACCCGGCCGTAGAAGCGCGCAT
CACGGAGCTGCTGCAGAACGCACCCTCGGACCGTGCCTGGCGCCACCGGG
GATGGCTGGTCATGCTCCGGGCTCGCCATGCCGCCACGGAGGGCAGGGGA
GGGTGCGGGCAGGGGCCCAGGGACGGTGCTGAGCACCCGCATCCAAGTCA
GCATGTCAGCAAAATAAAGGTAACGAGGGCCTCCGGTACTGCCAGCGCAG
GGGTCGGTCCCACTAGCAGCGACC
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Coding sequence (CDS) from alignment at S-ischiensis_contig73:63777..65450+

>mRNA_S-ischiensis_contig73.18615.1 ID=mRNA_S-ischiensis_contig73.18615.1|Name=mRNA_S-ischiensis_contig73.18615.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1200bp|location=Sequence derived from alignment at S-ischiensis_contig73:63777..65450+ (Schizocladia ischiensis KU_0333)
ATGTGTTCGGGATCTTCTGGAGTCGGCTCGGGATTGGGCCAGATGTGTTC
GGGATCTTCTGGAGTCGGCTCGGGATTGGGCCAGGGAGGAGTGGATGCTG
CAGTACTGCGGGACGCGAAGATCGTGGACCTTCTGCGGCGCCACTCGACC
CCAGAACAGTGGAGCAAGTGGCTGGCCACCCCACTCGACCTCGCAGCCAG
GGCGGGAAACTTGAGCGTGGTTGAAGCTCTTTTGGAGTTGGGGGCAAACG
TGAACGGGGCAGTCTGTAAGGGGGGCAAAAGCCCCATCCACCTCGCGGCT
GCGGGGGGGCACACGCTTGTCCTGCAGGCAGTGCTGCGGGCTGGGGCGGA
CGTCAACGCCAGGGATGGAGAAGGATGGACAGCTCTCCACGGGGCTGCTG
GCAACGGCCATCTGACGGCGGTGGAGGCACTGCTGGAGGCAGGGGCTGCG
GCACATGCCAAGACAGCAGAGGTCCACGAATGGACCGCGCTCCACCGGGC
TTGTTGGCACGGCCACTCCGCCGTGGTGCAAGCGCTGCTCAAGGCTGACG
TCACCCGGACATCCGACTCAACGCTTTGCTTTGGAAGAACCAAGGTGCCA
GCCCCCGGCATCTGGCCGCTGAAGGGGAGCATGCAGAAGTGAGGAGGAGT
GGATGCTGCAGTACTGCGGGACGCGAAGATCGTGGACCTTCTGCGGCGCC
ACTCGACCCCAGAACAGTGGAGCAAGTGGCTGGCCACCCCACTCGACCTC
GCAGCCAGGGCGGGAAACTTGAGCGTGGTTGAAGCTCTTTTGGAGTTGGG
GGCAAACGTGAACGGGGCAGTCTGTAAGGGGGGCAAAAGCCCCATCCACC
TCGCGGCTGCGGGGGGGCACACGCTTGTCCTGCAGGCAGTGCTGCGGGCT
GGGGCGGACGTCAACGCCAGGGATGGAGAAGGATGGACAGCTCTCCACGG
GGCTGCTGGCAACGGCCATCTGACGGCGGTGGAGGCACTGCTGGAGGCAG
GGGCTGCGGCACATGCCAAGACAGCAGAGGTCCACGAATGGACCGCGCTC
CACCGGGCTTGTTGGCACGGCCACTCCGCCGTGGTGCAAGCGCTGCTCAA
GGCTGACGTCACCCGGACATCCGACTCAACGCTTTGCTTTGGAAGAACCA
AGGTGCCAGCCCCCGGCATCTGGCCGCTGAAGGGGAGCATGCAGAAGTGA
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