mRNA_S-ischiensis_contig73.18614.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig73.18614.1
Unique NamemRNA_S-ischiensis_contig73.18614.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig73.18614.1 vs. uniprot
Match: D7FXK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK8_ECTSI)

HSP 1 Score: 380 bits (977), Expect = 2.490e-125
Identity = 175/243 (72.02%), Postives = 197/243 (81.07%), Query Frame = 1 
Query:  343 RESTWSNPGGEDLVHVEEGLWAAERPFIWNGIDVGGRMVVAKLSDGSLWVHSPVNLDPGLRAALDKLGPVRHIVSPNYEHVKYAGQWIEAYPEARSYACPGLAERTADVRFSSDVGNRPGDDSPPEWGGEIWACLLDCEANPFTGRPFFNEVVFFHRPTKSLITADLYWNYPR-EAPFGTRLWKFGMDKVYLPFYKALMVTDRAAFEARVGEILGWGVETIVPCHGLVVRDGAVEALRCHLLG 1068
            RE TWSNP G+D+V V   +W AERPF+WNGIDVGGRM V KLSDGSLWVHSPV+LD  L+ AL  LGPV HIVSPNYEHVKYA QW+EAYP A SYACPGLAER  +V F+ +VG    D+S PEWG EI AC +DCE NPFTG+PFFNEVVFFHRPTK+LIT+DLYWNYPR E P GTR+WK+GMDKVYLPFYK  MVTD  AF ++V +IL WGVETIVPCHG +VR GA +ALR  LLG
Sbjct:   15 REMTWSNPMGDDMVQVLGDVWCAERPFVWNGIDVGGRMAVVKLSDGSLWVHSPVDLDEPLKEALASLGPVGHIVSPNYEHVKYAKQWVEAYPSAVSYACPGLAERQPEVGFTREVGASIEDESLPEWGDEILACFMDCETNPFTGKPFFNEVVFFHRPTKTLITSDLYWNYPRKEVPLGTRVWKWGMDKVYLPFYKKFMVTDGEAFVSKVNQILDWGVETIVPCHGGIVRSGAPQALRQQLLG 257
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BLAST of mRNA_S-ischiensis_contig73.18614.1 vs. uniprot
Match: A0A1Y1IMY2_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMY2_KLENI)

HSP 1 Score: 305 bits (781), Expect = 5.460e-95
Identity = 147/269 (54.65%), Postives = 184/269 (68.40%), Query Frame = 1 
Query:  259 DTAILGKRGAARLSAVSTEAATDSTTPARESTWSNPGGEDLVHVEEG-LWAAERPFIWNGIDVGGRMVVAKLSDGSLWVHSPVNLDPGLRAALDKLGPVRHIVSPNYEHVKYAGQWIEAYPEARSYACPGLAERTADVRFSSDVGNRPGDDSPPEWGGEIWACLLDCEANPFTGRPFFNEVVFFHRPTKSLITADLYWNYPREA-PFGTRLWKFGMDKVYLPFYKALMVTDRAAFEARVGEILGWGVETIVPCHGLVVRDGAVEALRCH 1059
            D   LG+R     +A  TEAA        + TWSNP G  L  V  G +WAAERPF+WNGIDVGG+M V +L DGS+WVHSPV LD  L+AA+D+LGPV+HIV+PNYEH  +A QWIEAYP+A++YACPGL  +  DVR+++++G   G  +P EWGGE      DCE NPFT +PFFNEVV+ H P+  L   DL+WNYP +A P GT +WK GMDKVYLPFYK  M+  +  FE R+  +L WG   I+PCHG VV + A + LR H
Sbjct:   67 DKTQLGRRTRVVHAAAQTEAAP------LDKTWSNPSGNVLTEVVPGQVWAAERPFMWNGIDVGGKMGVVRLRDGSVWVHSPVPLDNQLKAAMDQLGPVKHIVTPNYEHAGFAQQWIEAYPDAKAYACPGLRAKKPDVRYAAEIGAN-GSATPAEWGGEFSFAFFDCEHNPFTLKPFFNEVVYVHHPSGVLFVTDLFWNYPGKAVPPGTFIWKQGMDKVYLPFYKYFMLKRKDKFEQRLKTVLSWGFSIILPCHGTVVDEKAADVLRRH 328
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BLAST of mRNA_S-ischiensis_contig73.18614.1 vs. uniprot
Match: A0A8J9RQ74_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RQ74_9CHLO)

HSP 1 Score: 303 bits (775), Expect = 6.650e-95
Identity = 139/239 (58.16%), Postives = 170/239 (71.13%), Query Frame = 1 
Query:  349 STWSNPGGEDLVHVEEGLWAAERPFIWNGIDVGGRMVVAKLSDGSLWVHSPVNLDPGLRAALDKLGPVRHIVSPNYEHVKYAGQWIEAYPEARSYACPGLAERTADVRFSSDVGNRPGDDSPPEWGGEIWACLLDCEANPFTGRPFFNEVVFFHRPTKSLITADLYWNYPREAPFGTRLWKFGMDKVYLPFYKALMVTDRAAFEARVGEILG-WGVETIVPCHGLVVRDGAVEALRCHL 1062
            ST++N  G+ L  +   +WAA+RPFIWN IDVGGRM V KLSDGS+WVHSPV LD  L AAL +LG V+HIVSPNYEH KYA QWIE YP ARSYACPGL E+   V +++++G   G+  PPEW GE+    L  E NPF G+PFFNEVVFF +P K LIT+DL+WNYP +AP GT+LWKFGMD+VYLPFY+  M++D+  ++     I   W  E I+PCHG  V     E LR HL
Sbjct:   35 STFTNTSGKVLQQLAPNVWAADRPFIWNRIDVGGRMAVLKLSDGSIWVHSPVQLDDDLAAALGELGEVKHIVSPNYEHTKYAKQWIERYPGARSYACPGLKEKEPQVPYTTELGGGGGE--PPEWLGEVQTTCLTYERNPFNGKPFFNEVVFFFKPEKLLITSDLFWNYPNQAPGGTKLWKFGMDRVYLPFYRRFMISDKGEYDEATRRIFKEWNFEAILPCHGDFVPSNGKEVLRKHL 271
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BLAST of mRNA_S-ischiensis_contig73.18614.1 vs. uniprot
Match: A0A7S4C8N9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C8N9_9EUGL)

HSP 1 Score: 306 bits (784), Expect = 7.240e-92
Identity = 136/238 (57.14%), Postives = 168/238 (70.59%), Query Frame = 1 
Query:  349 STWSNPGGEDLVHVEEGLWAAERPFIWNGIDVGGRMVVAKLSDGSLWVHSPVNLDPGLRAALDKLGPVRHIVSPNYEHVKYAGQWIEAYPEARSYACPGLAERTADVRFSSDVGNRPGDDSPPEWGGEIWACLLDCEANPFTGRPFFNEVVFFHRPTKSLITADLYWNYPREAPFGTRLWKFGMDKVYLPFYKALMVTDRAAFEARVGEILGWGVETIVPCHGLVVRDGAVEALRCHL 1062
            S WSNPG E L  V   LW AERPFIWN IDVGG+M V +L+DGSLWVHSPV LD  L+AAL  LGPV++I+SPNYEHVKYA QWI+AYP+A +Y CPG  E+   + F ++VG   G+  P  W  ++    +DCE NPFT  PFFNEVVF H PTK+LI  DL+WNYP +AP GTR WK+GMD+VYLPFYK  M+ DR+ F+  V  I+ W  ++++PCHG  +  G  EA   HL
Sbjct:  174 SEWSNPGKEVLKKVAPDLWVAERPFIWNSIDVGGKMAVVRLADGSLWVHSPVELDAPLKAALAALGPVKYIMSPNYEHVKYAQQWIDAYPDAIAYGCPGAKEKFPQISFQAEVG--VGNAVPEAWASDLLVTYMDCEHNPFTRSPFFNEVVFVHLPTKTLIVTDLFWNYPIDAPAGTRAWKWGMDEVYLPFYKQFMICDRSRFKTAVDRIVAWDFDSVLPCHGTYIAQGGKEAFVKHL 409
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BLAST of mRNA_S-ischiensis_contig73.18614.1 vs. uniprot
Match: A0A835ZG26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG26_9STRA)

HSP 1 Score: 292 bits (747), Expect = 7.460e-91
Identity = 131/241 (54.36%), Postives = 163/241 (67.63%), Query Frame = 1 
Query:  340 ARESTWSNPGGEDLVHVEEGLWAAERPFIWNGIDVGGRMVVAKLSDGSLWVHSPVNLDPGLRAALDKLGPVRHIVSPNYEHVKYAGQWIEAYPEARSYACPGLAERTADVRFSSDVGNRPGDDSPPEWGGEIWACLLDCEANPFTGRPFFNEVVFFHRPTKSLITADLYWNYPREAPFGTRLWKFGMDKVYLPFYKALMVTDRAAFEARVGEILGWGVETIVPCHGLVVRDGAVEALRCHL 1062
            AR+ TWSNP G DL  ++  +W AERPFIWN IDVGGRM V KL DGSLWVHSPV LDP L+  L +LGPVRH+VSPNYEHVKYA QWI AYP+A ++ACPGL ++  D+ +   +G     D+P +W  EI    L+CE  P   + FF+EVVF H P++ L+  D+YWNYPR AP  T+LWKFGMD VYLP Y+ L+V D   F+  +  I  W   T+VPCHG VV + A +     L
Sbjct:   19 ARDKTWSNPKGLDLTPIKHNVWGAERPFIWNTIDVGGRMTVIKLEDGSLWVHSPVELDPALQQTLAELGPVRHVVSPNYEHVKYAQQWIHAYPDATAWACPGLKDKKPDIGYDRTIGTTA--DAPADWPREIGFVWLNCERVPVLNQAFFSEVVFHHEPSQCLLCTDVYWNYPRSAPPKTQLWKFGMDVVYLPIYRNLLVADAREFDKLLARIDAWNFNTVVPCHGRVVMEAARDKFFAFL 257
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BLAST of mRNA_S-ischiensis_contig73.18614.1 vs. uniprot
Match: C1MGP7_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MGP7_MICPC)

HSP 1 Score: 290 bits (741), Expect = 1.210e-89
Identity = 132/242 (54.55%), Postives = 162/242 (66.94%), Query Frame = 1 
Query:  346 ESTWSNPGGEDLVHVEEGL-WAAERPFIWNGIDVGGRMVVAKLSDGSLWVHSPVNLDPGLRAALDKLGPVRHIVSPNYEHVKYAGQWIEAYPEARSYACPGLAERTADVRFSSDVGNRPGDDSPPEWGGEIWACLLDCEANPFTGRPFFNEVVFFHRPTKSLITADLYWNYPR--EAPFGTRLWKFGMDKVYLPFYKALMVTDRAAFEARVGEILGWGVETIVPCHGLVVRDGAVEALRCHL 1062
            E TWSNP G  L  V  G+ WAAERPF WN IDVGG+M V +L DG+LWVHSP++LD   RAA+D LG V+H+VSPNYEHVK+A QW EAYP+A  Y CPG+  +   + + ++VG    D +P  WGGE    L DCE NPFT  PFFNEVVF H  +      D++WNYP   + P GTRLWKFGMD+VYLPFY+A MV DR  F     ++L W  +  +PCHG  +  GA +ALR HL
Sbjct:   48 EKTWSNPTGNVLTDVVPGVVWAAERPFTWNAIDVGGKMAVVRLRDGALWVHSPIDLDDATRAAIDALGSVKHVVSPNYEHVKWAAQWKEAYPDATLYGCPGMRAKKPGIPWDAEVGE---DGAPEAWGGEFDVALFDCEVNPFTSTPFFNEVVFCHAASGVAFVTDVFWNYPGGDDVPPGTRLWKFGMDRVYLPFYRAAMVRDREKFARAREKVLSWDFDAALPCHGSFIPRGAKDALRRHL 286
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BLAST of mRNA_S-ischiensis_contig73.18614.1 vs. uniprot
Match: A0A7S0IGZ2_MICPS (Hypothetical protein n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0IGZ2_MICPS)

HSP 1 Score: 289 bits (739), Expect = 2.400e-89
Identity = 131/241 (54.36%), Postives = 163/241 (67.63%), Query Frame = 1 
Query:  355 WSNPGGEDLVHVEEGLWAAERPFIWNGIDVGGRMVVAKLSDGSLWVHSPVNLDPGLRAALDKLG-PVRHIVSPNYEHVKYAGQWIEAYPEARSYACPGLAERTADVRFSSDVGNRPGDDSPPEWGGEIWACLLDCEANPFTGRPFFNEVVFFHRPTKSLITADLYWNYP---REAPFGTRLWKFGMDKVYLPFYKALMVTDRAAFEARVGEILGWGVETIVPCHGLVVRDGAVEALRCHLL 1065
            WSNP G  L  + E +WAAERPF+W GIDVGG+M V K+ DGSLWVHSPV+LD  LRAAL ++G  V+H+VSPN+EHVKYA QW  A+P+A  + CPG+ +    + F  +VG   GD  P EW GE      DCE NPF G PFFNEVVF HRP+  ++  DL+WNY    +  P  TR WKFGMD+VYLPFY+A MV DRA F  R+G ++ W  ++++PCHG  V      ALR HLL
Sbjct:   48 WSNPSGSVLTPLREKVWAAERPFVWQGIDVGGKMGVVKMRDGSLWVHSPVDLDDDLRAALTEIGGDVKHVVSPNFEHVKYAAQWKAAFPDAVLWGCPGMIDEKPLIPFDREVG--VGDACPEEWNGEFELAFFDCEVNPFVGAPFFNEVVFHHRPSGVVLVTDLFWNYGGGGQALPAATRAWKFGMDRVYLPFYRAFMVRDRARFAERIGRVMAWEFDSLLPCHGTFVDGRGKRALREHLL 286
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BLAST of mRNA_S-ischiensis_contig73.18614.1 vs. uniprot
Match: A0A0G4EB62_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EB62_VITBC)

HSP 1 Score: 285 bits (729), Expect = 1.320e-87
Identity = 132/240 (55.00%), Postives = 159/240 (66.25%), Query Frame = 1 
Query:  355 WSNPGGEDLVHVEEGLWAAERPFIWNGIDVGGRMVVAKLSDGSLWVHSPVNLDPGLRAALDKLGPVRHIVSPNYEHVKYAGQWIEAYPEARSYACPGLAERTADVRFSSDVGNRPGDDSPPEWGGEIWACLLDCEANPFTGRPFFNEVVFFHRPTKSLITADLYWNYP-----REAPFGTRLWKFGMDKVYLPFYKALMVTDRAAFEARVGEILGWGVETIVPCHGLVV--RDGAVEALR 1053
            W NP G  L  V + +W A RPF+WN IDVG RMV+ +L DGSLW HSPVNLD   RA +D LGPV+HIVSPN+EH+KY   W +AYP+A +Y CPGL  R  +     +V N P    P  W  E   C +DCE NPFT + FFNEVVFFH+P+K+LIT+D YWNYP     R  P  TRLWKFGMD+VYLPFYK LM+TD+  F   V  +LGW  E I+PCHG +V  RD     +R
Sbjct:   66 WGNPDGVTLREVTDNVWEANRPFLWNTIDVGSRMVLIRLKDGSLWAHSPVNLDIPTRAEVDALGPVKHIVSPNFEHLKYGPLWGQAYPDAVTYGCPGLMAR--EPWCMQEVANDP----PDSWLDEFECCFIDCEQNPFTRKSFFNEVVFFHKPSKTLITSDFYWNYPSTSPSRPIPQSTRLWKFGMDRVYLPFYKRLMITDKGRFNELVERVLGWRAERIIPCHGSIVEGRDACEAEIR 299
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BLAST of mRNA_S-ischiensis_contig73.18614.1 vs. uniprot
Match: A0A812Q2U2_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812Q2U2_9DINO)

HSP 1 Score: 276 bits (706), Expect = 4.800e-84
Identity = 123/238 (51.68%), Postives = 156/238 (65.55%), Query Frame = 1 
Query:  352 TWSNPGGEDLVHVEEGLWAAERPFIWNGIDVGGRMVVAKLSDGSLWVHSPVNLDPGLRAALDKLGPVRHIVSPNYEHVKYAGQWIEAYPEARSYACPGLAERTADVRFSSDVGNRPGDDSPP-EWGGEIWACLLDCEANPFTGRPFFNEVVFFHRPTKSLITADLYWNYPREAPFGTRLWKFGMDKVYLPFYKALMVTDRAAFEARVGEILGWGVETIVPCHGLVVRDGAVEALRCHL 1062
            TWSNP G  L  +   LW AERPFIWN IDVGG+M V +L DG LWVHSPV+LD  LR  L++LGPVRHIVSPN+EHVK+A QW  A+P+A  +  PG+ ++   + F  ++   P D S P EWGG +  C  DCE  P  G PFFNEV+F+H P+ +L+  D++WNYP   P G+ LWKF MDK+YLPFYK  MVT   +  A +  +  W  E ++PCHG  V  GA +  R HL
Sbjct:   80 TWSNPTGSVLTALNTDLWVAERPFIWNSIDVGGKMAVVRLPDGGLWVHSPVDLDEELRKGLEQLGPVRHIVSPNFEHVKWAAQWKGAFPDATLWGTPGMKDKFPKIPFDVEL---PSDSSAPAEWGGALLMCFADCERTPLLGTPFFNEVIFYHVPSDTLMCTDIFWNYPSGLPSGSALWKFLMDKIYLPFYKRFMVTSPGSLNAVLDAVAEWKPEKLLPCHGRYVPSGAWQQFRGHL 314
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BLAST of mRNA_S-ischiensis_contig73.18614.1 vs. uniprot
Match: A0A0G4F7M5_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4F7M5_9ALVE)

HSP 1 Score: 274 bits (701), Expect = 4.380e-83
Identity = 128/241 (53.11%), Postives = 158/241 (65.56%), Query Frame = 1 
Query:  346 ESTWSNPGGEDLVHVEEGLWAAERPFIWNGIDVGGRMVVAKLSDGSLWVHSPVNLDPGLRAALDKLGPVRHIVSPNYEHVKYAGQWIEAYPEARSYACPGLAERTADVRFSSDVG--NRPGDDSPPEWGGEIWACLLDCEANPFTGRPFFNEVVFFHRPTKSLITADLYWNYPRE---APFGTRLWKFGMDKVYLPFYKALMVTDRAAFEARVGEILGWGVETIVPCHGLVVRDGAVEALR 1053
            + TWSN  GE L  V + +W A+RPFIWN IDVGG+M V +L DG+LWVHSPV  D  L  AL K G ++H+VSPN+EHVK+AG W   +P + +  CPGLAER   V F   V      G+ +P EW GE   C LD E NPFT RPFFNEV+FFH+P+K+LI +D  WNYP +    P  TR+WK GMDK+Y PFY+  M+ D A FE    +I  WGVE I+PCHG VV +G  E L 
Sbjct:   82 QKTWSNQKGEVLCRVTDSIWYADRPFIWNKIDVGGKMAVVRLRDGTLWVHSPVAFDRTLAEALGKAGRIKHLVSPNFEHVKFAGDWKREFPSSVASGCPGLAEREPGVGFDQTVPVVGEGGEGAPSEWLGEFEVCFLDFEHNPFTRRPFFNEVIFFHKPSKTLIVSDALWNYPGQPERVPLLTRVWKLGMDKLYFPFYENFMIKDEAGFERARRKIFSWGVERIIPCHGDVV-EGRGECLN 321
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig73.18614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXK8_ECTSI2.490e-12572.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Y1IMY2_KLENI5.460e-9554.65Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A8J9RQ74_9CHLO6.650e-9558.16Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A0A7S4C8N9_9EUGL7.240e-9257.14Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A835ZG26_9STRA7.460e-9154.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
C1MGP7_MICPC1.210e-8954.55Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
A0A7S0IGZ2_MICPS2.400e-8954.36Hypothetical protein n=2 Tax=Micromonas TaxID=3883... [more]
A0A0G4EB62_VITBC1.320e-8755.00Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A812Q2U2_9DINO4.800e-8451.68Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A0G4F7M5_9ALVE4.380e-8353.11Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig73contigS-ischiensis_contig73:57390..63712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score386.7
Seed ortholog evalue9.8e-105
Seed eggNOG ortholog2880.D7FXK8
EggNOG free text desc.Domain of unknown function (DUF4336)
EggNOG OGs2BIUM@1,2RZ4V@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons6
Model size1988
Cds size909
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig73.18614.1prot_S-ischiensis_contig73.18614.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig73 58307..63550 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817201.5330317-UTR-S-ischiensis_contig73:57389..583061622817201.5330317-UTR-S-ischiensis_contig73:57389..58306Schizocladia ischiensis KU_0333UTRS-ischiensis_contig73 57390..58306 -
1695740931.5472808-UTR-S-ischiensis_contig73:57389..583061695740931.5472808-UTR-S-ischiensis_contig73:57389..58306Schizocladia ischiensis KU_0333UTRS-ischiensis_contig73 57390..58306 -
1622817201.6080172-UTR-S-ischiensis_contig73:63550..637121622817201.6080172-UTR-S-ischiensis_contig73:63550..63712Schizocladia ischiensis KU_0333UTRS-ischiensis_contig73 63551..63712 -
1695740931.6587353-UTR-S-ischiensis_contig73:63550..637121695740931.6587353-UTR-S-ischiensis_contig73:63550..63712Schizocladia ischiensis KU_0333UTRS-ischiensis_contig73 63551..63712 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817201.5437105-CDS-S-ischiensis_contig73:58306..584711622817201.5437105-CDS-S-ischiensis_contig73:58306..58471Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 58307..58471 -
1695740931.5601923-CDS-S-ischiensis_contig73:58306..584711695740931.5601923-CDS-S-ischiensis_contig73:58306..58471Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 58307..58471 -
1622817201.554324-CDS-S-ischiensis_contig73:59005..591161622817201.554324-CDS-S-ischiensis_contig73:59005..59116Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 59006..59116 -
1695740931.5698726-CDS-S-ischiensis_contig73:59005..591161695740931.5698726-CDS-S-ischiensis_contig73:59005..59116Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 59006..59116 -
1622817201.5649843-CDS-S-ischiensis_contig73:60158..602341622817201.5649843-CDS-S-ischiensis_contig73:60158..60234Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 60159..60234 -
1695740931.5822926-CDS-S-ischiensis_contig73:60158..602341695740931.5822926-CDS-S-ischiensis_contig73:60158..60234Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 60159..60234 -
1622817201.575573-CDS-S-ischiensis_contig73:61968..621001622817201.575573-CDS-S-ischiensis_contig73:61968..62100Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 61969..62100 -
1695740931.591272-CDS-S-ischiensis_contig73:61968..621001695740931.591272-CDS-S-ischiensis_contig73:61968..62100Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 61969..62100 -
1622817201.5860727-CDS-S-ischiensis_contig73:62747..628891622817201.5860727-CDS-S-ischiensis_contig73:62747..62889Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 62748..62889 -
1695740931.607934-CDS-S-ischiensis_contig73:62747..628891695740931.607934-CDS-S-ischiensis_contig73:62747..62889Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 62748..62889 -
1622817201.5971668-CDS-S-ischiensis_contig73:63267..635501622817201.5971668-CDS-S-ischiensis_contig73:63267..63550Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 63268..63550 -
1695740931.6289065-CDS-S-ischiensis_contig73:63267..635501695740931.6289065-CDS-S-ischiensis_contig73:63267..63550Schizocladia ischiensis KU_0333CDSS-ischiensis_contig73 63268..63550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig73.18614.1

>prot_S-ischiensis_contig73.18614.1 ID=prot_S-ischiensis_contig73.18614.1|Name=mRNA_S-ischiensis_contig73.18614.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=303bp
MRATVACTASLLLLVLPRRDVEGFRAQPWAGADTAILGKRGAARLSAVST
EAATDSTTPARESTWSNPGGEDLVHVEEGLWAAERPFIWNGIDVGGRMVV
AKLSDGSLWVHSPVNLDPGLRAALDKLGPVRHIVSPNYEHVKYAGQWIEA
YPEARSYACPGLAERTADVRFSSDVGNRPGDDSPPEWGGEIWACLLDCEA
NPFTGRPFFNEVVFFHRPTKSLITADLYWNYPREAPFGTRLWKFGMDKVY
LPFYKALMVTDRAAFEARVGEILGWGVETIVPCHGLVVRDGAVEALRCHL
LG*
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mRNA from alignment at S-ischiensis_contig73:57390..63712-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig73.18614.1 ID=mRNA_S-ischiensis_contig73.18614.1|Name=mRNA_S-ischiensis_contig73.18614.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6323bp|location=Sequence derived from alignment at S-ischiensis_contig73:57390..63712- (Schizocladia ischiensis KU_0333)
GGGGGCAAAGCTGAGAAATCCCCCAGCTCGAGTGGCAGCAGGCCAGCAGC
AGCAGCAACAGCTGCAGTTGGGTGCAGCTCTTCAGTCAGGAAGTGCGAGG
AGCGGGGCCAGGTCACTCCCCTTTGAACCTGCTGCCGTTGGCCTCGGCGC
TGGTTAGGCTCCATGAGAGCCACCGTTGCATGTACCGCGTCCCTGTTGCT
TCTTGTACTACCCCGCCGGGATGTAGAAGGGTTCCGGGCTCAACCTTGGG
CAGGCGCGGACACGGCGATACTTGGGAAAAGGGGAGCGGCAAGGCTTTCC
GCCGTGTCAACCGAGGCAGCTACGGATTCCACAACACCGGCGCGAGAGTC
AACGTGGTCCAATCCCGGGGGGGAAGACTTAGTGCACGTGGAGGAGGGGC
TATGGGCCGCCGAACGACCCTTCATATGGAATGGCATCGATGTAGGTGAG
ACACCCTGTAGAAATGCCGTATCATCATTATGGACTCTCGAGAAAGCACA
TTTCACGTGCACGGCACCACCCCCCGCTACGCAAGCACAGGCCATGGGCC
TGGATCGCGCCCCATACCCCCCCCCCGCTGGTCGTTTCGAGCCTTGTGCG
GCCTGGTGACTGAGGGGAGTTGTTGAGGCCTGGTGCACGCCTGCAGCAAA
GTTGTCATCACATGGGATGCGAGAGTCCATGGCTAAATAGCTACTCCTGT
CGGAGGGCAAACCCGAGGTTTCGACTTAGGGCTGTTGGCATTGCATGCAA
GGTTATGTCGCAAGACAAGCCAGTGAATACTGATCGCTCTGGCCATTGCC
CTGTTCCCTCGTCTCAATTTCAGGAGGGCGCATGGTGGTTGCCAAGCTGT
CAGACGGCTCTCTCTGGGTACACTCCCCGGTCAACCTGGACCCGGGCCTG
AGGGCAGCCTTGGACAAATTAGGGCCCGTCCGACACATAGTTTCACCCAA
CTATGAGCATGTCAAGTGAGAGGGGGCGGGGGTGGGGGCGGGGGAGAGAG
AGGGGGGGGGGAGGGGATGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGCGGGCGGGAGAGAGAGAGAGAGAGAGACAGACAGACAGACAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACATAGGAAGAGAGAGAA
GAGAGACAGGCAGACAGACAGACAGGCAGACGGAGTGAGTGAGTGAGAGA
GGCCCACGCACACGCCCATGGATACACACACACACACACGCATGCATTTA
CGCACATAGTCACACGCATGCACGCATGCACACAGACAGACAGAAACACC
ACATGCACACGCGCGGAGCCACCCCCCTTTGCCCCGCCTTGCTCCAATCC
CCCGCTTGGGGCACACACCACCACCACCACAACCACCACCACCACCCACC
ACCACCACCACCACCACCACCACCACCACCAACGCCACCACCACCAACAC
CACCACCACCACCACCACCATCACCACCACCACCACCACCACCACCCACC
ACCACCACCCACCACCACCACCACCACCACCGCCACCACCTCAACCACCA
CCACCACCACCACCACCACCACCACCCACCACCATCACCCACCACCACCA
CGGGGCTCACAGGTACGCGGGTCAGTGGATCGAGGCCTACCCCGAGGCGC
GGTCTTATGCGTGCCCCGGCCTGGCAGAGAGGACGGCGGACGTCCGCTTT
TCCTCAGACGTGGGGAACCGCCCGGGCGACGACAGCCCCCCAGAGTGAGT
GAAACCGATAGGGCTGTGAACTGGCAAGGCCTGCTTACAAGTTTGACTGT
TAACCGGTATTGTGACCGGTGTGTTTTAACCGGTTGCCGGCAACGGCTAA
AGTTTTGCCATAATCAACGAATGACGGTCATGTCGCCGGCTCCAGCTATA
GGATTGGCCACCGGTCGGTTAACCGGTTAAACCAGTTAGCTGGTATCGAC
CGGTAGAAACCGGCACCAGTTCATAACCCTGGAAACCGAGGCTTTCTCTT
TCAGTTGCTTCATCGTGCATGTGAGTCAGGGACGTGGACCGGGGGGGTGG
AAATGGCCGCCCCTCCACCCATGGCAGACGGATGCACCCCCCACCCACCC
ACCCCGGGCAAACATATGCCAGGGGTGTGGGAGGGGGCCTGCTGCGTCTC
GCCCGAGGAACGTGGTCAATGGTCTTTGCGACTGCGGGAATACTTGCGCA
AGCGCAATGTGAGTACACGCTTTGAAGTACTTCATTCAAGTGTATACTGC
AATGCTCTGTCCCGGCCTAGTTGGGATGCGAGAGTCCATGGCTAAATAGG
TACTTCGAAGTACGAGTACCCCTGTCGGGGGGTAAACCCCAAGTTTTTTT
GCTTAGGGCTTTCGGCAAAGCACGCAAGGTTCTTGTCACAAGGCAAGCCA
ACGAGTAGTGAATTTATCTATACTTTGAAGTATGAGTATGTATACTGCAG
GTGCATTCGGATACGGCCACCACTCATTGGGCTTGGGAAGCCCAACCAGC
CGCCGGGGGCAGTACAACAGCCCCCCGGGAGCGAGCGTTGTGTAGCCTTT
TGGAGGGTTTGGTAATGTAGGCCGAGCATGTGCGAACATCCTGGTTTGAG
CGTGGTTTTGCTAACCGTACAAGCAACGGAGAAAGGGTTGAGTAGCCGAC
GTTTGAAGGGGGTGTCTCGTCTTGGCCCGGGTCCAGCAAGCCGTTTGGTC
CCGCACGCTGCTTGAGCGTTGGCCCCTTGCGGACGGTGGGGCGTTAATGC
GATGTGATGTGATGTGATGTGATGTCAAACTATAGTACGCTAGGGTGCAC
TTCACATCACACAGGGACTATGGGACACTAACGTGATGTGATGTGATGTC
AAACTACAGTACATTAGGGTGCCCATCACATCACATCACATCGGTGTCCC
GCCCTCGTCCAAGGTTATGCCCCCTCCAGGAAAAGAAACGGCGCAAGCCT
CATGCTGCCGCCGTACTCTATCGTATGTGGGGTAGGGAGTGCGACATGGC
AACTGCACGATATGACTCGTGCAGCAATTGCCACGGGGACCTGGACGGGC
CCGAGGTCGGCCGTGCCCGAGACGGGCCTTCGGCCCTGGCTCGAGCGGGC
CACGGGCCGCTTCGCGGCCAGGGGGCCCGGGCGGGCCGAGCTCGGGTCTT
GGGCCCGGGCTCGGGCGCGCCGCGGGCCGCTGCGCGGCCGATGGGCCTCC
AGGGGCGGGGCCCGAGCCGGGGCACGGGCCGGGCCGGCTGGGCCCCAAAT
CGCTCAACCTGCAGATTCCGGCTCGCGGGTCCAGGCCCGTGTCTATCCTT
GCAAACTACCTGCCGTTCTACAGTACTACTTGTACTTACTTGAAAGCATG
AGCGTGTACTTCCCAAGTAAATCGAAGCATCTATTTTCGTGATGGCACCG
CCATCCCCAACAAATCCAAGGTATGATGGGGCGGGCCCTTTCCTCATCGC
TCCTTTGCGGCGCGGTGCGACGACGCAGGTGGGGCGGGGAGATATGGGCG
TGTCTGCTGGACTGCGAGGCCAACCCCTTCACCGGGAGGCCCTTCTTCAA
TGAGGTGGGGAGGCGCTTCCCTTCCGCATTGTACAGTAGTTGTAACTGCG
TGTTTCCTAGTAGTTTGCAGTGTACTTCGGAAGTACCGAGTACAGTATGT
GTGTGGCGAGGCCAAAACCCTTCACCGGGAGGCCCTTCTTCAATGAGGTG
GGGAGACCCTTCCCGTACATATTGTACACTAGCTTTATCTGCGTGCTTCC
TAGTAGTTTGCAGTATACTGCAGAAGTACAGTACAGTAGCTACGCTACCG
TGTACTTCGTAGTACAGTATGTGTGTGCAGCAAGGCCAATCCCTTCACCG
GAAGGCCCTCCTTCAATGAGGTGGGCAGGTCCTTCCCTTCCGTATTGTGC
ACTAGTTTTAGCTGCGTTCTTCCGAGTAGTTTGCAGTGTACAATACTGTA
GCTACGTTGCAGTGTAGTACAGTATGTGTGTGGTGAGGCCAACCCCTTCA
CCGGGAGGCCCTTCTTCAATGAGGTGGGCAGGCCCTTCCCTTCCGTATTG
TACCACACAGTATTAGCAGGAACGACAAAGGGCGAGGTGTACAGTAGGTC
ACATCACTACAGACCTCAAAGTGGCCCTTCCTTAGCTCGCCATGGTACGT
GGTTTCAGCTCCGTGCTTTCGAGTAGTTTGCAGTATTCAGTACAGTAGCT
ACGTACAGTGTGGTACAGTATGTGTGTGGCAGACACTGTACAAGTAGTGC
CCCCCCCCCCAGAGCCGACAACAAGGAGAAGTACTGTTTGATGGGTGTGT
ATATGTGTTGTACTAGGTAAGGGTGAGCGGAGAGGTACTCGCAAGTACTT
GGAAGTACTCTGTACAAGTCACCCTGCACAATCATACTTCTAAGTATGAC
GTGACCTGAGACCGCATCAGATTTGATAAACTGAAGCCAGCAATTCCTCG
ACGGAGGGTACAAACTCTCCTGTTTTTTCCCCCTTCGGGTTGTCCGCCAC
AGCCGTGCTCTCGACAGCTACTACTCACTCACTCACTCGTCAGAGCATGC
CTTCCACTTCATAAGAACACCCTGCGAATGCCGTCTCTCTCCGCAGGTGG
TTTTCTTTCACCGGCCCACCAAGAGCCTCATCACGGCAGACCTGTACTGG
AACTACCCGCGGGAGGCGCCGTTCGGAACGCGCCTGTGGAAGTTCGGCAT
GGACAAGGTGGGTGAAACGTCGGAGGGCCGTGCCAATGGTGTATGACCCC
ACCATTGTCATATACCATTGGGCCGTGCTACATGGTGTTGTGTCTTCAGG
GCCGGGCTCTTTGGTGGCCCTTGTTTTAGTGAACTAAGTACTTGGCGTGT
GGAAAGAAAATAAAGAAATACTTTGAGCCGTGTGGGCAGCGACTTTTCGG
CTGTCTCTGTAATGCTGCCTACCCGTAAGTGACACATTGCCTCTCTCCGC
CACTCTACTTACGAAACGTACCTAACGGGCGGCACACGACAACCGACACC
GTGCACGCCCCCCCCACCTTGTTCTTAGAACCTTGATGTGATCATCACTA
ACACTTCGAAGTATATAAGAACACTCAATTCTTAAATGGGACAACCACCA
ATACGAGAACAGTCAATCTCACACATGTGCGATTGTACCTCGTTACTTCG
TACAATTTGTATGAATCACCGTGCACGCCATGCCGCCACGCCTTTGCCGC
CTTAAGTCTTTCTTCCTTCTCTTAATCTTTCTTCCTTCCAGGTGTACCTG
CCCTTCTACAAGGCCCTCATGGTCACCGACCGGGCCGCGTTCGAGGCCCG
GGTCGGCGAGATCCTGGGATGGGGGGTGGAGACCATTGTGCCCTGCCACG
GCCTCGTGGTGCGCGACGGGGCTGTGGAAGCACTGCGGTGTCACCTACTC
GGGTAAAGCTGCAACTGATTAGGTGCTCTACTGTAGTGGCCTTCCTAGTC
CTCCTCCTTCTTCCCCACACAAACCTCCCCTCGTGAGCTAAGGAAGGGCC
ACCGTTGAGGTCTCTAAGTGACGTGACCTGCACCTCGCGCTGTGTTGTTC
GTGTTTATACTGAAGTGGCTATGCCCGGCCCCTCCGGGCGGTCATGGCCC
CCCCTTACAAACACTGCTGTGTACTCGTATCACGACGGCCGGTACGCTCC
CGGCCGTCTGTCCATCGGCCGTGGGAGTCTGTCCGATGCGGGCCAAGGGC
ACGCTGTGTGTTTGATGACACGAGGGCGGATCAGAGGTCGTACGAGCCAC
CCCCCTGCCCGGCAGCGGCGGCTGTGGCGGTGGCGGCGGCCCCAACACTT
ACAGTACGTCCCCACCGACACTGCTGTACACGCGGCCAAGGCCTGAACCG
GCTTCCATTTGGTGACCGGGTTCATGGACAGGCAGAACCTTGGGCAAGTC
CAGGCAATCTCAACGCTGTCTGAGTCCAAAGCTCAAGGGTGAATTTCGGG
CGTGGCTGTGGCGGCTAGCCACGTGTCCGTAGCACTGCAGGCACTTACAC
AGGGCCGGAAGGAAGAGTGCACAAGGCATGGACTACTTGAGTACTACTAC
TGTAGTACTTCGAAGTACTGCAGTGCGGCTGACGGGGGCACAGCGCTCCT
GAGCGTAGTCCAACTTTGCAGCAGCTGATTGCTATGTTGGCGGCCACCTG
TAGCTTACCATGCGTGCCCCGCTCAGGGGTGCTAACTAATGCTCCGTCAG
CCAGCCACACTCGGTGTGCAAGGTGAATTGGACACAGCCGTGGCTGGTAG
CCATGCCATGATATGCATTTATATACAGGGCAGTCTGGGCGCAAAAAGAA
TGGACAGTGCCAGACTGCGTGAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig73:57390..63712-

>mRNA_S-ischiensis_contig73.18614.1 ID=mRNA_S-ischiensis_contig73.18614.1|Name=mRNA_S-ischiensis_contig73.18614.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1818bp|location=Sequence derived from alignment at S-ischiensis_contig73:57390..63712- (Schizocladia ischiensis KU_0333)
ATGAGAGCCACCGTTGCATGTACCGCGTCCCTGTTGCTTCTTGTACTACC
CCGCCGGGATGTAGAAGGGTTCCGGGCTCAACCTTGGGCAGGCGCGGACA
CGGCGATACTTGGGAAAAGGGGAGCGGCAAGGCTTTCCGCCGTGTCAACC
GAGGCAGCTACGGATTCCACAACACCGGCGCGAGAGTCAACGTGGTCCAA
TCCCGGGGGGGAAGACTTAGTGCACGTGGAGGAGGGGCTATGGGCCGCCG
AACGACCCTTCATATGGAATGGCATCGATGTAGATGAGAGCCACCGTTGC
ATGTACCGCGTCCCTGTTGCTTCTTGTACTACCCCGCCGGGATGTAGAAG
GGTTCCGGGCTCAACCTTGGGCAGGCGCGGACACGGCGATACTTGGGAAA
AGGGGAGCGGCAAGGCTTTCCGCCGTGTCAACCGAGGCAGCTACGGATTC
CACAACACCGGCGCGAGAGTCAACGTGGTCCAATCCCGGGGGGGAAGACT
TAGTGCACGTGGAGGAGGGGCTATGGGCCGCCGAACGACCCTTCATATGG
AATGGCATCGATGTAGGAGGGCGCATGGTGGTTGCCAAGCTGTCAGACGG
CTCTCTCTGGGTACACTCCCCGGTCAACCTGGACCCGGGCCTGAGGGCAG
CCTTGGACAAATTAGGGCCCGTCCGACACATAGTTTCACCCAACTATGAG
CATGTCAAGAGGGCGCATGGTGGTTGCCAAGCTGTCAGACGGCTCTCTCT
GGGTACACTCCCCGGTCAACCTGGACCCGGGCCTGAGGGCAGCCTTGGAC
AAATTAGGGCCCGTCCGACACATAGTTTCACCCAACTATGAGCATGTCAA
GTACGCGGGTCAGTGGATCGAGGCCTACCCCGAGGCGCGGTCTTATGCGT
GCCCCGGCCTGGCAGAGAGGACGGCGGACGTCCGCTTTTCCTCAGACGTG
GGGAACCGCCCGGGCGACGACAGCCCCCCAGAGTACGCGGGTCAGTGGAT
CGAGGCCTACCCCGAGGCGCGGTCTTATGCGTGCCCCGGCCTGGCAGAGA
GGACGGCGGACGTCCGCTTTTCCTCAGACGTGGGGAACCGCCCGGGCGAC
GACAGCCCCCCAGAGTGGGGCGGGGAGATATGGGCGTGTCTGCTGGACTG
CGAGGCCAACCCCTTCACCGGGAGGCCCTTCTTCAATGAGGTGGGGCGGG
GAGATATGGGCGTGTCTGCTGGACTGCGAGGCCAACCCCTTCACCGGGAG
GCCCTTCTTCAATGAGGTGGTTTTCTTTCACCGGCCCACCAAGAGCCTCA
TCACGGCAGACCTGTACTGGAACTACCCGCGGGAGGCGCCGTTCGGAACG
CGCCTGTGGAAGTTCGGCATGGACAAGGTGGTTTTCTTTCACCGGCCCAC
CAAGAGCCTCATCACGGCAGACCTGTACTGGAACTACCCGCGGGAGGCGC
CGTTCGGAACGCGCCTGTGGAAGTTCGGCATGGACAAGGTGTACCTGCCC
TTCTACAAGGCCCTCATGGTCACCGACCGGGCCGCGTTCGAGGCCCGGGT
CGGCGAGATCCTGGGATGGGGGGTGGAGACCATTGTGCCCTGCCACGGCC
TCGTGGTGCGCGACGGGGCTGTGGAAGCACTGCGGTGTCACCTACTCGGG
TAAGTGTACCTGCCCTTCTACAAGGCCCTCATGGTCACCGACCGGGCCGC
GTTCGAGGCCCGGGTCGGCGAGATCCTGGGATGGGGGGTGGAGACCATTG
TGCCCTGCCACGGCCTCGTGGTGCGCGACGGGGCTGTGGAAGCACTGCGG
TGTCACCTACTCGGGTAA
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