mRNA_S-ischiensis_contig7.18305.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig7.18305.1 vs. uniprot
Match: D7G2L7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2L7_ECTSI) HSP 1 Score: 155 bits (393), Expect = 5.610e-41 Identity = 77/139 (55.40%), Postives = 94/139 (67.63%), Query Frame = 3
Query: 36 VRFHLTRRWLTCGRARDLALVFPP------GPTREEVVVMAFQRVTDLERFHVVLEVLEPSRQLGAAQRLGWLNIINPVYADRWFDLDLRVNDHRRMAEAFTEMAVLEPGPNFQRQTFSRHADPARHENIPGWDLPESW 434
VRF L WL+C +AR LA VFP G RE++VV F RVTD+++F VL L QL A +RLGWLN +NP DR DLDLR+NDHRR+A +EMAV+EPG N Q Q FSRHAD ARH IPGW++P++W
Sbjct: 1072 VRFRLASAWLSCAQARVLAGVFPERAKGTTGNPREDLVVELFGRVTDIDKFCTVLATLGRDAQLSAGRRLGWLNALNPHDIDRPLDLDLRLNDHRRIARVLSEMAVVEPGSNLQNQRFSRHADAARHFFIPGWEVPQTW 1210
BLAST of mRNA_S-ischiensis_contig7.18305.1 vs. uniprot
Match: A0A835YKK7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKK7_9STRA) HSP 1 Score: 137 bits (344), Expect = 2.250e-34 Identity = 72/150 (48.00%), Postives = 86/150 (57.33%), Query Frame = 3
Query: 36 VRFHLTRRWLTCGRARDLALVFPPGPT----------------REEVVVMAFQRVTDLERFHVVLEVLEPSRQLGA-AQRLGWLNIINPVYADRWFDLDLRVNDHRRMAEAFTEMAVLEPGPNFQRQTFSRHADPARHENIPGWDLPESW 434
+R L W T +AR L P G RE+ VV F RV DLERF V L + A A+RLGWLNI++P+ D FDLDLR DHRR+AE T++A+ EPGPNFQ Q FSR AD A+HE IPGWDLP+ W
Sbjct: 1600 LRLRLATAWFTAAQARALVEAVPDGXXXXXXXXXXXXXXXXXXREDAVVALFPRVLDLERFDAVFGALPAAAARHAVARRLGWLNILDPLRIDHAFDLDLRCCDHRRLAEVLTDLAITEPGPNFQSQRFSRRADAAQHEWIPGWDLPDRW 1749
BLAST of mRNA_S-ischiensis_contig7.18305.1 vs. uniprot
Match: F0YFV2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFV2_AURAN) HSP 1 Score: 92.4 bits (228), Expect = 8.760e-19 Identity = 51/147 (34.69%), Postives = 80/147 (54.42%), Query Frame = 3
Query: 6 NKIALLCRD*VRFHLTRRWLTCGRARDLALVFPPGPT--REEVVVMAFQRVTDLERFHVVLEVLEPSRQLGAAQRLGWLNIINPVYADRWFDLDLRVNDHRRMAEAFTEMAVLEPGPNFQRQTFSRHADPARHENIPGWDLPESWHQ 440
N++ LL + +L +R+ + + RDL FP R EV++ F RV DL+ F+ V++ L+ RLG++N+ NPV+ADR + L L+V D R+MA +A++EPG N+ + F R + PGW LP W +
Sbjct: 1381 NRLRLL-----QANLGKRFFSVDQVRDLVARFPRNAQQLRVEVLMAVFGRVVDLDNFYTVVDELDEEEIDELVFRLGYMNVYNPVFADRMYKLCLKVPDERQMAIVLVRLAIVEPGENWVDEKFRRKES---LQWSPGWQLPAEWEE 1519
BLAST of mRNA_S-ischiensis_contig7.18305.1 vs. uniprot
Match: A0A6G0W9B4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W9B4_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 5.470e-18 Identity = 45/129 (34.88%), Postives = 68/129 (52.71%), Query Frame = 3
Query: 57 RWLTCGRARDLALVFPP-GPTREEVVVMAFQRVTDLERFHVVLEVLEPSRQLGAAQRLGWLNIINPVYADRWFDLDLRVNDHRRMAEAFTEMAVLEPGPNFQRQTFS--RHADPARHENIPGWDLPESW 434
RW+T +A ++ P + E + F R+ D+E F + + L + A LGWLNI+NP + DR+++ DL V + R + F +A EPG N+ +TF R P IPGW+LP+SW
Sbjct: 1048 RWITVAQAGEIVRCMPTQNHGKTETCRILFPRIIDIENFMQIFDTLTFPEKAECAYFLGWLNILNPQFPDRYYEFDLSVREEREAVKIFVRLATTEPGENWIHETFGWVRGEPP-----IPGWELPKSW 1171
BLAST of mRNA_S-ischiensis_contig7.18305.1 vs. uniprot
Match: A0A024G150_9STRA (Uncharacterized protein n=5 Tax=Albugo candida TaxID=65357 RepID=A0A024G150_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 5.560e-18 Identity = 47/136 (34.56%), Postives = 74/136 (54.41%), Query Frame = 3
Query: 48 LTRRWLTCGRARDLALVFPPG-PTREEVVVMAFQRVTDLERFHVVLEVLEPSRQLG----AAQRLGWLNIINPVYADRWFDLDLRVNDHRRMAEAFTEMAVLEPGPNFQRQTFSRHADPARHENIPGWDLPESWHQ 440
++ RW +C +A + P + E + + F + D+++F L +L+P A +LGWLNIINP++ +R++ LDL V D R M + ++A+ EPG N+Q Q+FS E IPGW LP W +
Sbjct: 1239 ISERWFSCAQAAKIIRCMPREFNAKVETIRVLFPHLLDIDQFG--LRILDPLLSKDEVHLCATQLGWLNIINPMHPERFYSLDLSVWDEREMTKLLVQLAIAEPGENWQNQSFSWAKG---EEGIPGWKLPVRWER 1369
BLAST of mRNA_S-ischiensis_contig7.18305.1 vs. uniprot
Match: A0A662XVY1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XVY1_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 1.030e-17 Identity = 44/130 (33.85%), Postives = 70/130 (53.85%), Query Frame = 3
Query: 57 RWLTCGRARDLALVFPPG-PTREEVVVMAFQRVTDLERFHVVLEVLEPSRQLGAAQRLGWLNIINPVYADRWFDLDLRVNDHRRMAEAFTEMAVLEPGPNFQRQTFSR-HADPARHENIPGWDLPESWHQ 440
RWL+ +A + P R E + F R+ D++ F+ + + + Q + LGWLNI+NP+ +R++ L+L VND R M + E+A+ EPG N+ Q+F+ +P IPGW LP W +
Sbjct: 1261 RWLSSEQAAKIIACMPATFHARPETARILFSRIIDIDNFYRLYDSMSKPEQQVCVRTLGWLNIVNPMVPERFYSLNLAVNDEREMTKVLVELAIGEPGENWLNQSFALVQGEPG----IPGWKLPVRWEK 1386
BLAST of mRNA_S-ischiensis_contig7.18305.1 vs. uniprot
Match: D7FPR4_ECTSI (Hypothetical leucine rich repeat calcium binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPR4_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 2.940e-16 Identity = 39/111 (35.14%), Postives = 64/111 (57.66%), Query Frame = 3
Query: 108 GPTREEVVVMAFQRVTDLERFHVVLEVLEPSRQLGAAQRLGWLNIINPVYADRWFDLDLRVNDHRRMAEAFTEMAVLEPGPNFQRQTFSRHADPARHENIPGWDLPESWHQ 440
G R EVV + +VTD ++++ L P + R G+LN++NP++ADR++ L+L V D R MA+ +A+ EPG N+ +T++R + + GW+LP W Q
Sbjct: 709 GQIRAEVVTTFYHKVTDTGNMCLLVDALRPDEEREVLARRGYLNVVNPIFADRYYHLNLAVWDEREMAKILVHLAITEPGENWLDETYTRSPEIGA---LYGWELPLDWTQ 816
BLAST of mRNA_S-ischiensis_contig7.18305.1 vs. uniprot
Match: A0A1V9YK53_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YK53_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 5.580e-16 Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 3
Query: 57 RWLTCGRARDLALVFPP--GPTREEVVVMAFQRVTDLERFHVVLEVLEPSRQLGAAQRLGWLNIINPVYADRWFDLDLRVNDHRRMAEAFTEMAVLEPGPNFQRQTFSRHADPARHENIPGWDLPESW 434
RW+T + R + +P G TR + +M F R DL + ++ L RLGWLN +P+Y D +++LDL + +HR +++ ++A+ EPG N+Q +F +R IPGW L SW
Sbjct: 905 RWVTTSQVRYILERWPVDFGTTRVDAALMLFDRTLDLYNYIQIIWTLSDKEIAQLIHRLGWLNFWSPLYPDIYYELDLTIYEHREVSKVLVQLALDEPGENWQGASFGW----SRDNPIPGWVLNMSW 1028
BLAST of mRNA_S-ischiensis_contig7.18305.1 vs. uniprot
Match: A0A6A5A4U0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A4U0_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 1.780e-15 Identity = 40/131 (30.53%), Postives = 74/131 (56.49%), Query Frame = 3
Query: 48 LTRRWLTCGRARDLALVFPP--GPTREEVVVMAFQRVTDLERFHVVLEVLEPSRQLGAAQRLGWLNIINPVYADRWFDLDLRVNDHRRMAEAFTEMAVLEPGPNFQRQTFSRHADPARHENIPGWDLPESW 434
L+ RW++ + ++P R +V+++ F R+TD+ F VL +L R+GWL++ +P+ D +++LDL + + R +A+ ++A+ EPG N+Q +T+ + R + IPGW L +SW
Sbjct: 400 LSSRWISVKQTIRFLTMWPRVFQAARLDVILIFFDRITDVYNFQQVLPLLTDDEVAQLLYRVGWLHVWSPLVPDLYYELDLSMYEQREVAKILVQLALNEPGENWQNETYGWN----RGDPIPGWQLNQSW 526
BLAST of mRNA_S-ischiensis_contig7.18305.1 vs. uniprot
Match: A0A024UEE2_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UEE2_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 1.950e-15 Identity = 40/135 (29.63%), Postives = 75/135 (55.56%), Query Frame = 3
Query: 36 VRFHLTRRWLTCGRARDLALVFPP--GPTREEVVVMAFQRVTDLERFHVVLEVLEPSRQLGAAQRLGWLNIINPVYADRWFDLDLRVNDHRRMAEAFTEMAVLEPGPNFQRQTFSRHADPARHENIPGWDLPESW 434
+ + L+ RW++ + ++P R +VV++ F R+TD+ F V +L R+GWL++ +P+ D +++LDL + + R +A+ ++A+ EPG N+Q +T+ + R + IPGW L +SW
Sbjct: 1037 LNYLLSSRWISVKQTIRFLTMWPRVFQAARLDVVLIFFDRITDVYNFQQVFPLLTDDEIAQLLYRVGWLHVWSPLVPDIYYELDLAIYEQREVAKMLVQLALSEPGENWQNETYGWN----RGDPIPGWQLNQSW 1167 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig7.18305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig7.18305.1 >prot_S-ischiensis_contig7.18305.1 ID=prot_S-ischiensis_contig7.18305.1|Name=mRNA_S-ischiensis_contig7.18305.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=115bp MAFQRVTDLERFHVVLEVLEPSRQLGAAQRLGWLNIINPVYADRWFDLDLback to top mRNA from alignment at S-ischiensis_contig7:3342752..3347817- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig7.18305.1 ID=mRNA_S-ischiensis_contig7.18305.1|Name=mRNA_S-ischiensis_contig7.18305.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5066bp|location=Sequence derived from alignment at S-ischiensis_contig7:3342752..3347817- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig7:3342752..3347817- >mRNA_S-ischiensis_contig7.18305.1 ID=mRNA_S-ischiensis_contig7.18305.1|Name=mRNA_S-ischiensis_contig7.18305.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=690bp|location=Sequence derived from alignment at S-ischiensis_contig7:3342752..3347817- (Schizocladia ischiensis KU_0333)back to top |