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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1036 |
| Cds size | 951 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817141.3326905-UTR-S-ischiensis_contig7:2738299..2738334 | 1622817141.3326905-UTR-S-ischiensis_contig7:2738299..2738334 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig7 2738300..2738334 + |
| 1695740884.6700754-UTR-S-ischiensis_contig7:2738299..2738334 | 1695740884.6700754-UTR-S-ischiensis_contig7:2738299..2738334 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig7 2738300..2738334 + |
| 1622817141.3440933-UTR-S-ischiensis_contig7:2739241..2739247 | 1622817141.3440933-UTR-S-ischiensis_contig7:2739241..2739247 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig7 2739242..2739247 + |
| 1695740884.6833472-UTR-S-ischiensis_contig7:2739241..2739247 | 1695740884.6833472-UTR-S-ischiensis_contig7:2739241..2739247 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig7 2739242..2739247 + |
| 1622817141.3845522-UTR-S-ischiensis_contig7:2740700..2740744 | 1622817141.3845522-UTR-S-ischiensis_contig7:2740700..2740744 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig7 2740701..2740744 + |
| 1695740884.7239447-UTR-S-ischiensis_contig7:2740700..2740744 | 1695740884.7239447-UTR-S-ischiensis_contig7:2740700..2740744 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig7 2740701..2740744 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817141.3579934-CDS-S-ischiensis_contig7:2739247..2739325 | 1622817141.3579934-CDS-S-ischiensis_contig7:2739247..2739325 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig7 2739248..2739325 + |
| 1695740884.6955135-CDS-S-ischiensis_contig7:2739247..2739325 | 1695740884.6955135-CDS-S-ischiensis_contig7:2739247..2739325 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig7 2739248..2739325 + |
| 1622817141.3695927-CDS-S-ischiensis_contig7:2739827..2740700 | 1622817141.3695927-CDS-S-ischiensis_contig7:2739827..2740700 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig7 2739828..2740700 + |
| 1695740884.7090507-CDS-S-ischiensis_contig7:2739827..2740700 | 1695740884.7090507-CDS-S-ischiensis_contig7:2739827..2740700 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig7 2739828..2740700 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig7.18232.1 >prot_S-ischiensis_contig7.18232.1 ID=prot_S-ischiensis_contig7.18232.1|Name=mRNA_S-ischiensis_contig7.18232.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=317bp
MAAAGVFLTRVEVEQGLRRAAGTRAKGGTAVVDVTVLVDHLFDHHYHHHE
EQKNSRHHHHHHHWTPARPQASSRDKSAARESDPGSTNSPEAGGNRCGGS
KGTRTPENGNDDGGSGRGTVQGCATTGVGGGSGAATGEETQRDGNGRDRG
GFGDATGGGSGGVDGTCSSGGNGSPGLGTKRGGLEGRSGLVPPAAGAPPG
ATGGAAASSGVSDGSTEIVSGPAALMMAAGGGMSPDEASVLPSVGLDAVP
TPPPTPPAAAVTVPVTSESTTGREGGLDQPLVDPRGSDRGSHAGATGASM
PPGGQGSASAAGGACD* back to topmRNA from alignment at S-ischiensis_contig7:2738300..2740744+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig7.18232.1 ID=mRNA_S-ischiensis_contig7.18232.1|Name=mRNA_S-ischiensis_contig7.18232.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2445bp|location=Sequence derived from alignment at S-ischiensis_contig7:2738300..2740744+ (Schizocladia ischiensis KU_0333)
GGGGTAGTGCGCGGCTGGACGTGGCGGAGATCCAGGTGAGCAGTGATGGA
ATATCTACGCAAATCAACCTTTTTATCGACAGTAGTGATCTATAGATCTA
TCGATAGTCGATATTGGATAGTTTGACCCGCACGGATCCAAGTAGTTAGT
GACACCACCCACAGAATCAGTCGGGCCCGATAACTATCTACTGATCGATA
TTCCATCGCTGGAGGTGAGTGCGTGGCTGGATGTGGCGGAAATCCAGGTG
AGCAGTGATGGAATATCTAAGCAAATCAACCTTTTTGTTGACAGCAGTGA
TCTATACATCTATCGATAGTCGCTATGGGATAGTTAACCCACACTAGAGC
TAGTGACGCCACTCGCAGGATCAGTCGGGCCCGATAACTATCCACTGATC
GATATTCCATCACTGCAGGTGGGTGTGGGTGTCTGTCTGTTGGCCCTGTT
CGCCGTGGTCAGCCTGCCCATTTCTGAGTATGTTCCTGTGATCATCTGTG
TTTCTGAGCAACTGCTGTCCCCAAGCCCGGCCGCACCCCTGTGGCAAATG
CGGGTGTGTGGGTCTCTGTCTGTTGGCCCTGTTCACCGTGGTCAGCCTGC
CCTTTTTTGTGTACTTACGAAGTATGTTCCTGTGATCATCTGCGTTTCTG
AGAAGTGCCCCCCCAACCCCTGGGCGCACCTCTGTGGCAATTCGATCTTT
TACGATAGCCCTTGGGGGACCGCGGTGCACTGATTCCACATCACTCTGTG
TAGGTAGGTGTGGTGTTTAATGTACGAGTACACTACTGGAAGTGGCTTAG
AGGTGTCCTGCTTGAACGCGATGCGGGGGTCAAATCGCTCAGTCCCTTTC
CACCGATTGTGGGCCGCAGGCCTTGAAAGGTAGCCGTGACGGCAGTCGCT
ATTGTAATGATGGCACATCGTTGCTATCCTGTGCACTGGCAGGGGATCAT
GGCCGCGGCTGGGGTGTTCCTGACGCGCGTGGAAGTCGAGCAGGGCTTGC
GGCGTGCGGCCGGCACCCGGGCAAAGGTGAGAGGCGGCGTGCACACAGGT
GCAAATAGTTTGGGTCTTTTCTTTGTTTTTTAGCTTTCCCTCGGCCATGT
CTCACTATGTGGACCGAATACCCATTTTGGACATGGCCTTTTTTGCCGCG
GAGGTATGTACTTGAGTACCAACCTATGCGCGTGTTCTTTTTGTGCAGTC
ATACGTGCCTCACTGCGCCGGCCGACATAGGAATTTTCCTACGTACAGTA
GTACCTCGTACTTCGAAGTACCACGTGACACTTGTGGTATATTTGCACTT
CATCATGTGAGTACTTGCAAGTACTTGGGCTCGCCTGAGACGGTTTGCGG
TGGCTTTCGACGCAGACGGATCTGCCTGAACTGTAGGCTACTCGAGTGCT
CGTACAAGGACAGTAGCACGTACATGTAGGCACTGCTGTTAGTAGTGTTA
ACATTTGTTGATCAACGCGCGGGCCTCGTCGACGACCGACCACACACGCC
TGCTCCACTAACTCGAAAAACCTGGCAGGGGGGGACAGCGGTGGTAGACG
TGACCGTGCTGGTCGACCACCTTTTCGACCACCATTACCACCACCACGAG
GAACAAAAAAACTCGCGCCACCACCACCACCACCACCACTGGACCCCAGC
GCGGCCACAAGCTTCGTCACGGGACAAATCAGCGGCCCGGGAATCAGACC
CCGGGTCTACTAACAGCCCTGAGGCCGGCGGCAACCGCTGCGGCGGCAGC
AAGGGGACAAGAACTCCCGAAAACGGCAACGACGACGGTGGCTCGGGCCG
CGGCACGGTCCAAGGGTGTGCCACCACGGGGGTCGGCGGCGGTAGCGGCG
CCGCCACCGGCGAGGAGACGCAGCGGGACGGTAACGGCCGGGACCGGGGC
GGCTTCGGCGATGCCACTGGTGGCGGCAGCGGCGGAGTTGATGGCACTTG
CAGTAGCGGCGGCAACGGCAGCCCTGGGTTGGGCACAAAACGTGGCGGTC
TAGAGGGCCGGAGTGGGCTTGTCCCACCAGCCGCCGGTGCACCACCAGGG
GCTACAGGTGGCGCTGCCGCCAGTAGTGGCGTCAGTGATGGCTCAACGGA
GATAGTCTCCGGGCCTGCAGCGCTGATGATGGCTGCCGGGGGGGGAATGA
GTCCCGACGAGGCTTCTGTGTTGCCATCGGTTGGCCTGGACGCCGTGCCG
ACACCACCACCGACGCCTCCAGCGGCTGCGGTGACTGTGCCAGTGACCTC
TGAGTCAACGACAGGCCGTGAAGGCGGCCTGGATCAACCGCTCGTTGATC
CCCGGGGCAGTGACCGTGGCAGCCATGCCGGTGCCACTGGCGCCAGCATG
CCACCGGGGGGCCAGGGTTCCGCCAGTGCTGCTGGTGGGGCCTGTGACTA
ATCGTCGTCATCGTCCGGTTCATCGGCACCGTCGTCATTGCAATG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig7:2738300..2740744+ >mRNA_S-ischiensis_contig7.18232.1 ID=mRNA_S-ischiensis_contig7.18232.1|Name=mRNA_S-ischiensis_contig7.18232.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1902bp|location=Sequence derived from alignment at S-ischiensis_contig7:2738300..2740744+ (Schizocladia ischiensis KU_0333)
ATGGCCGCGGCTGGGGTGTTCCTGACGCGCGTGGAAGTCGAGCAGGGCTT
GCGGCGTGCGGCCGGCACCCGGGCAAAGATGGCCGCGGCTGGGGTGTTCC
TGACGCGCGTGGAAGTCGAGCAGGGCTTGCGGCGTGCGGCCGGCACCCGG
GCAAAGGGGGGGACAGCGGTGGTAGACGTGACCGTGCTGGTCGACCACCT
TTTCGACCACCATTACCACCACCACGAGGAACAAAAAAACTCGCGCCACC
ACCACCACCACCACCACTGGACCCCAGCGCGGCCACAAGCTTCGTCACGG
GACAAATCAGCGGCCCGGGAATCAGACCCCGGGTCTACTAACAGCCCTGA
GGCCGGCGGCAACCGCTGCGGCGGCAGCAAGGGGACAAGAACTCCCGAAA
ACGGCAACGACGACGGTGGCTCGGGCCGCGGCACGGTCCAAGGGTGTGCC
ACCACGGGGGTCGGCGGCGGTAGCGGCGCCGCCACCGGCGAGGAGACGCA
GCGGGACGGTAACGGCCGGGACCGGGGCGGCTTCGGCGATGCCACTGGTG
GCGGCAGCGGCGGAGTTGATGGCACTTGCAGTAGCGGCGGCAACGGCAGC
CCTGGGTTGGGCACAAAACGTGGCGGTCTAGAGGGCCGGAGTGGGCTTGT
CCCACCAGCCGCCGGTGCACCACCAGGGGCTACAGGTGGCGCTGCCGCCA
GTAGTGGCGTCAGTGATGGCTCAACGGAGATAGTCTCCGGGCCTGCAGCG
CTGATGATGGCTGCCGGGGGGGGAATGAGTCCCGACGAGGCTTCTGTGTT
GCCATCGGTTGGCCTGGACGCCGTGCCGACACCACCACCGACGCCTCCAG
CGGCTGCGGTGACTGTGCCAGTGACCTCTGAGTCAACGACAGGCCGTGAA
GGCGGCCTGGATCAACCGCTCGTTGATCCCCGGGGCAGTGACCGTGGCAG
CCATGCCGGTGCCACTGGCGCCAGCATGCCACCGGGGGGCCAGGGTTCCG
CCAGTGCTGCTGGTGGGGCCTGTGACTAAGGGGGGACAGCGGTGGTAGAC
GTGACCGTGCTGGTCGACCACCTTTTCGACCACCATTACCACCACCACGA
GGAACAAAAAAACTCGCGCCACCACCACCACCACCACCACTGGACCCCAG
CGCGGCCACAAGCTTCGTCACGGGACAAATCAGCGGCCCGGGAATCAGAC
CCCGGGTCTACTAACAGCCCTGAGGCCGGCGGCAACCGCTGCGGCGGCAG
CAAGGGGACAAGAACTCCCGAAAACGGCAACGACGACGGTGGCTCGGGCC
GCGGCACGGTCCAAGGGTGTGCCACCACGGGGGTCGGCGGCGGTAGCGGC
GCCGCCACCGGCGAGGAGACGCAGCGGGACGGTAACGGCCGGGACCGGGG
CGGCTTCGGCGATGCCACTGGTGGCGGCAGCGGCGGAGTTGATGGCACTT
GCAGTAGCGGCGGCAACGGCAGCCCTGGGTTGGGCACAAAACGTGGCGGT
CTAGAGGGCCGGAGTGGGCTTGTCCCACCAGCCGCCGGTGCACCACCAGG
GGCTACAGGTGGCGCTGCCGCCAGTAGTGGCGTCAGTGATGGCTCAACGG
AGATAGTCTCCGGGCCTGCAGCGCTGATGATGGCTGCCGGGGGGGGAATG
AGTCCCGACGAGGCTTCTGTGTTGCCATCGGTTGGCCTGGACGCCGTGCC
GACACCACCACCGACGCCTCCAGCGGCTGCGGTGACTGTGCCAGTGACCT
CTGAGTCAACGACAGGCCGTGAAGGCGGCCTGGATCAACCGCTCGTTGAT
CCCCGGGGCAGTGACCGTGGCAGCCATGCCGGTGCCACTGGCGCCAGCAT
GCCACCGGGGGGCCAGGGTTCCGCCAGTGCTGCTGGTGGGGCCTGTGACT
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