mRNA_S-ischiensis_contig7.18231.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig7.18231.1
Unique NamemRNA_S-ischiensis_contig7.18231.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig7.18231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig7contigS-ischiensis_contig7:2737207..2737840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size452
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817141.2886565-CDS-S-ischiensis_contig7:2737206..27372621622817141.2886565-CDS-S-ischiensis_contig7:2737206..2737262Schizocladia ischiensis KU_0333CDSS-ischiensis_contig7 2737207..2737262 +
1695740884.6391811-CDS-S-ischiensis_contig7:2737206..27372621695740884.6391811-CDS-S-ischiensis_contig7:2737206..2737262Schizocladia ischiensis KU_0333CDSS-ischiensis_contig7 2737207..2737262 +
1622817141.3000445-CDS-S-ischiensis_contig7:2737445..27378391622817141.3000445-CDS-S-ischiensis_contig7:2737445..2737839Schizocladia ischiensis KU_0333CDSS-ischiensis_contig7 2737446..2737839 +
1695740884.6567254-CDS-S-ischiensis_contig7:2737445..27378391695740884.6567254-CDS-S-ischiensis_contig7:2737445..2737839Schizocladia ischiensis KU_0333CDSS-ischiensis_contig7 2737446..2737839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig7.18231.1prot_S-ischiensis_contig7.18231.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig7 2737207..2737839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig7.18231.1

>prot_S-ischiensis_contig7.18231.1 ID=prot_S-ischiensis_contig7.18231.1|Name=mRNA_S-ischiensis_contig7.18231.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=150bp
EDRAAALREELRRYLEVLRPLRGEEADPRDGLARRSAGPLEHHARALEAD
LLAAEERLRLQRPALASAWRAFISSGGAAGGSTAAEAAGQPEGSGAGAVA
AVATAAAAATATVTLRSLGGGAGSGANGGSGEGSPIVPQDFQVAEQAGVA
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mRNA from alignment at S-ischiensis_contig7:2737207..2737840+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig7.18231.1 ID=mRNA_S-ischiensis_contig7.18231.1|Name=mRNA_S-ischiensis_contig7.18231.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=634bp|location=Sequence derived from alignment at S-ischiensis_contig7:2737207..2737840+ (Schizocladia ischiensis KU_0333)
GAAGACCGGGCCGCCGCCCTGCGGGAGGAGCTACGGCGGTACCTAGAGGT
TCTCAGGTATGGGGATATATATATATACGAAGTATACTCGTACTAGTAGT
ATATATATGTACTCACGTTGTGCTTGCCGTAGTCCCGAGACCATTGACCA
CGTGCCTCGGCCGAGACGGAGCAAATAGGCAGTAAAAGTATTTGCCCCAC
GGGTGTTTGTTTCTTCTGCCGTCTGCGCCTTCTGCTCAGGCCCCTGCGGG
GGGAGGAGGCCGACCCGAGGGACGGCCTAGCCCGCCGCTCCGCCGGGCCG
CTCGAGCACCACGCCCGGGCCCTGGAGGCCGACCTCCTGGCCGCGGAGGA
GCGCCTGCGCCTGCAGCGGCCCGCGCTGGCCTCCGCCTGGCGTGCTTTCA
TCTCGTCTGGGGGGGCGGCTGGAGGTTCCACAGCAGCAGAAGCAGCAGGG
CAACCTGAGGGTTCCGGGGCCGGGGCAGTGGCGGCCGTGGCCACGGCGGC
GGCGGCGGCGACGGCCACGGTCACCTTGAGGTCCCTTGGTGGTGGGGCCG
GCAGTGGTGCCAATGGCGGTTCGGGGGAAGGCAGTCCCATAGTCCCTCAG
GATTTCCAAGTTGCCGAGCAGGCGGGGGTGGCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig7:2737207..2737840+

>mRNA_S-ischiensis_contig7.18231.1 ID=mRNA_S-ischiensis_contig7.18231.1|Name=mRNA_S-ischiensis_contig7.18231.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=900bp|location=Sequence derived from alignment at S-ischiensis_contig7:2737207..2737840+ (Schizocladia ischiensis KU_0333)
GAAGACCGGGCCGCCGCCCTGCGGGAGGAGCTACGGCGGTACCTAGAGGT
TCTCAGGAAGACCGGGCCGCCGCCCTGCGGGAGGAGCTACGGCGGTACCT
AGAGGTTCTCAGGCCCCTGCGGGGGGAGGAGGCCGACCCGAGGGACGGCC
TAGCCCGCCGCTCCGCCGGGCCGCTCGAGCACCACGCCCGGGCCCTGGAG
GCCGACCTCCTGGCCGCGGAGGAGCGCCTGCGCCTGCAGCGGCCCGCGCT
GGCCTCCGCCTGGCGTGCTTTCATCTCGTCTGGGGGGGCGGCTGGAGGTT
CCACAGCAGCAGAAGCAGCAGGGCAACCTGAGGGTTCCGGGGCCGGGGCA
GTGGCGGCCGTGGCCACGGCGGCGGCGGCGGCGACGGCCACGGTCACCTT
GAGGTCCCTTGGTGGTGGGGCCGGCAGTGGTGCCAATGGCGGTTCGGGGG
AAGGCAGTCCCATAGTCCCTCAGGATTTCCAAGTTGCCGAGCAGGCGGGG
GTGGCGGCCCCTGCGGGGGGAGGAGGCCGACCCGAGGGACGGCCTAGCCC
GCCGCTCCGCCGGGCCGCTCGAGCACCACGCCCGGGCCCTGGAGGCCGAC
CTCCTGGCCGCGGAGGAGCGCCTGCGCCTGCAGCGGCCCGCGCTGGCCTC
CGCCTGGCGTGCTTTCATCTCGTCTGGGGGGGCGGCTGGAGGTTCCACAG
CAGCAGAAGCAGCAGGGCAACCTGAGGGTTCCGGGGCCGGGGCAGTGGCG
GCCGTGGCCACGGCGGCGGCGGCGGCGACGGCCACGGTCACCTTGAGGTC
CCTTGGTGGTGGGGCCGGCAGTGGTGCCAATGGCGGTTCGGGGGAAGGCA
GTCCCATAGTCCCTCAGGATTTCCAAGTTGCCGAGCAGGCGGGGGTGGCG
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