mRNA_S-ischiensis_contig7.18086.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig7.18086.1
Unique NamemRNA_S-ischiensis_contig7.18086.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig7.18086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig7contigS-ischiensis_contig7:1445998..1447265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size368
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817137.9067037-CDS-S-ischiensis_contig7:1445997..14461261622817137.9067037-CDS-S-ischiensis_contig7:1445997..1446126Schizocladia ischiensis KU_0333CDSS-ischiensis_contig7 1445998..1446126 +
1695740882.4536228-CDS-S-ischiensis_contig7:1445997..14461261695740882.4536228-CDS-S-ischiensis_contig7:1445997..1446126Schizocladia ischiensis KU_0333CDSS-ischiensis_contig7 1445998..1446126 +
1622817137.9197145-CDS-S-ischiensis_contig7:1447028..14472651622817137.9197145-CDS-S-ischiensis_contig7:1447028..1447265Schizocladia ischiensis KU_0333CDSS-ischiensis_contig7 1447029..1447265 +
1695740882.4642704-CDS-S-ischiensis_contig7:1447028..14472651695740882.4642704-CDS-S-ischiensis_contig7:1447028..1447265Schizocladia ischiensis KU_0333CDSS-ischiensis_contig7 1447029..1447265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig7.18086.1prot_S-ischiensis_contig7.18086.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig7 1445998..1447265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig7.18086.1

>prot_S-ischiensis_contig7.18086.1 ID=prot_S-ischiensis_contig7.18086.1|Name=mRNA_S-ischiensis_contig7.18086.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=122bp
GGHANAFYGHGGGAPGQEGRMLRRELLELFEEHLSEDVLDRMLAVLEPEE
RDTYLDRRFVAHLRGLLAPQLERAARESASGNSARAHAARAAGGGGGGGG
SPGVWSAGALPLGAGSGGLGGF
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mRNA from alignment at S-ischiensis_contig7:1445998..1447265+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig7.18086.1 ID=mRNA_S-ischiensis_contig7.18086.1|Name=mRNA_S-ischiensis_contig7.18086.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1268bp|location=Sequence derived from alignment at S-ischiensis_contig7:1445998..1447265+ (Schizocladia ischiensis KU_0333)
GGGGGCCATGCCAACGCCTTCTATGGTCACGGCGGGGGGGCGCCCGGGCA
GGAGGGGCGTATGCTGAGGAGGGAGTTGCTGGAGCTGTTTGAGGAGCATT
TGTCCGAGGACGTGCTGGACCGCATGCTGGTGAGTGGGCCCCCGGCGGGG
GGGGGGGGGAGGCATGCCACTGTTTGTAGTGCAAGGTGCAGTACCGTGAT
CGTCGGAGAGATCTTGCCCCCCATGCCAATTTTTGGGAGAACTTTCTCGC
CGAATACTGGTCGGATTCGCGCAGGAAAACTCGAAAAGTCTCCCTCAGAA
CCTGGGGGAACTTTTCCGAGAGTTTTTGGGAAAATTCAGGACCTTCCCGG
CTCGAAATATCCCCCCGAAAATTGTCCCGTGGGGGCAAGATCTCTCCGAC
GATTACGGTAGTAGCGCGCTGTGCTGTAGTACTGCAGAGGTCCCCGTCAT
CCGGCGGGTCCGTCTCGGCGGTCTCGGGACTATGGTAGGCTTATCTCCTG
AGCAACATGAGCACATTCAGTGCTTGACTATGTACACCCTCGCTCCGCGC
ACAGTACCCACACACATCTTCTACGTACTGACCCTCCCCGCCTCCTCCCC
TTCCTCCTGCTCCTCCTCCTCCTCCCCCCACCCCCCCTACTCTCCTCCTC
CTCCTCCTCCTCCCCCTTCCCTTCCCCGTGCACTCCTCCCCTGGTGAGCC
AAGGAAGGGCCACTGTTGAGGCCTCAAGTGACGTGGCCCGCACCTCGCCC
TGTGTTTTTCCTGTCCATACTGGCTAGTACAACAACCAGTGTGGCGTTGC
AGACCAGGTGTTCTGACAGCCCCGTCGTCGCCCCCGCTGTCGCCGCCGCC
GCCGCCGCCATATCGTGGTGATTCATATACTCATAAATTGTAGCGAGGTA
CAATCGCACATGTGTGAGATTGACTGTTCTCGTATTACAGTAGTACTTCG
TAGTTGTGCCGTTTAAGAATTGTCGTTTAAGCTATATCGTGGTATCGACG
CCCCCCATCCTCCCTTGGATCACCATGACAGGCGGTGCTGGAGCCCGAGG
AGCGGGACACCTACTTGGACAGGCGTTTTGTCGCCCACCTGCGGGGGCTC
CTCGCGCCCCAGCTTGAGAGGGCCGCGCGGGAGTCCGCCTCGGGCAACAG
CGCCAGAGCCCACGCTGCTAGGGCCGCAGGCGGCGGCGGCGGTGGCGGTG
GCAGCCCGGGTGTTTGGAGTGCCGGAGCTCTGCCCTTGGGTGCTGGCAGC
GGTGGGCTTGGTGGCTTT
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Coding sequence (CDS) from alignment at S-ischiensis_contig7:1445998..1447265+

>mRNA_S-ischiensis_contig7.18086.1 ID=mRNA_S-ischiensis_contig7.18086.1|Name=mRNA_S-ischiensis_contig7.18086.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=732bp|location=Sequence derived from alignment at S-ischiensis_contig7:1445998..1447265+ (Schizocladia ischiensis KU_0333)
GGGGGCCATGCCAACGCCTTCTATGGTCACGGCGGGGGGGCGCCCGGGCA
GGAGGGGCGTATGCTGAGGAGGGAGTTGCTGGAGCTGTTTGAGGAGCATT
TGTCCGAGGACGTGCTGGACCGCATGCTGGGGGGCCATGCCAACGCCTTC
TATGGTCACGGCGGGGGGGCGCCCGGGCAGGAGGGGCGTATGCTGAGGAG
GGAGTTGCTGGAGCTGTTTGAGGAGCATTTGTCCGAGGACGTGCTGGACC
GCATGCTGGCGGTGCTGGAGCCCGAGGAGCGGGACACCTACTTGGACAGG
CGTTTTGTCGCCCACCTGCGGGGGCTCCTCGCGCCCCAGCTTGAGAGGGC
CGCGCGGGAGTCCGCCTCGGGCAACAGCGCCAGAGCCCACGCTGCTAGGG
CCGCAGGCGGCGGCGGCGGTGGCGGTGGCAGCCCGGGTGTTTGGAGTGCC
GGAGCTCTGCCCTTGGGTGCTGGCAGCGGTGGGCTTGGTGGCTTTGCGGT
GCTGGAGCCCGAGGAGCGGGACACCTACTTGGACAGGCGTTTTGTCGCCC
ACCTGCGGGGGCTCCTCGCGCCCCAGCTTGAGAGGGCCGCGCGGGAGTCC
GCCTCGGGCAACAGCGCCAGAGCCCACGCTGCTAGGGCCGCAGGCGGCGG
CGGCGGTGGCGGTGGCAGCCCGGGTGTTTGGAGTGCCGGAGCTCTGCCCT
TGGGTGCTGGCAGCGGTGGGCTTGGTGGCTTT
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