mRNA_S-ischiensis_contig7.17987.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig7.17987.1 vs. uniprot
Match: A0A7S3UR78_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UR78_HETAK) HSP 1 Score: 92.4 bits (228), Expect = 1.980e-19 Identity = 57/145 (39.31%), Postives = 73/145 (50.34%), Query Frame = 1
Query: 1 LATWVVQRRHLFQGKRVLELGSGCGLTGLACAGAGAASVTLTDFGCADPEERRRRST----FAPLRALENLGYNVALNSFTPEAHPGPAGSSGSGEAAGVKADPGAGGRCHVQSLDWHDCVKPGYSPSGGDVYETVLAADCLYDE 423
+++W+ Q HLFQGK VLELGSGCGL G+ A GA+ V LTDF D RRRR+ P L NLGYN AL +AD VQ+LDW +C+ + P Y+ VLAA C+Y++
Sbjct: 152 MSSWMGQNNHLFQGKTVLELGSGCGLPGILAAKLGASKVALTDFASGDERARRRRNRGTVFLPPPDLLANLGYNAAL----------------------CRADDVT----EVQNLDWLECLSKSFQPK--QQYDWVLAAACIYNK 268
BLAST of mRNA_S-ischiensis_contig7.17987.1 vs. uniprot
Match: A0A813EGF2_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EGF2_POLGL) HSP 1 Score: 62.0 bits (149), Expect = 2.170e-8 Identity = 48/148 (32.43%), Postives = 65/148 (43.92%), Query Frame = 1
Query: 1 LATWVVQR---RHLFQGKRVLELGSGCGLTGLACAGAGAASVTLTDFG---CADPEERRRRSTFAPLRALENLGYNVALNSFTPEAHPGPAGSSGSGEAAGVKADPGAGGRCHVQSLDWHDCVK---PGYSPSGGDVYETVLAADCLY 417
+A W + LF+G+RVLELGSG GL G+A AG+ A SV LTDFG D ++ S P + L NL NV+ N V +DWHD + P P + +E ++AAD +Y
Sbjct: 207 MAAWALAADGGAELFRGRRVLELGSGIGLLGVALAGSIAGSVVLTDFGFEEVVDGAQQEDSSRLIPPKLLRNLKDNVSANGLE---------------------------NAEVWRIDWHDFLTAPHPALEPI--ERFERLVAADVVY 325
BLAST of mRNA_S-ischiensis_contig7.17987.1 vs. uniprot
Match: A0A813EG56_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EG56_POLGL) HSP 1 Score: 62.0 bits (149), Expect = 2.370e-8 Identity = 48/148 (32.43%), Postives = 65/148 (43.92%), Query Frame = 1
Query: 1 LATWVVQR---RHLFQGKRVLELGSGCGLTGLACAGAGAASVTLTDFG---CADPEERRRRSTFAPLRALENLGYNVALNSFTPEAHPGPAGSSGSGEAAGVKADPGAGGRCHVQSLDWHDCVK---PGYSPSGGDVYETVLAADCLY 417
+A W + LF+G+RVLELGSG GL G+A AG+ A SV LTDFG D ++ S P + L NL NV+ N V +DWHD + P P + +E ++AAD +Y
Sbjct: 198 MAAWALAADGGAELFRGRRVLELGSGIGLLGVALAGSIAGSVVLTDFGFEEVVDGAQQEDSSRLIPPKLLRNLKDNVSANGLE---------------------------NAEVWRIDWHDFLTAPHPALEPI--ERFERLVAADVVY 316
BLAST of mRNA_S-ischiensis_contig7.17987.1 vs. uniprot
Match: A0A7S4UKI5_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UKI5_GUITH) HSP 1 Score: 58.2 bits (139), Expect = 2.000e-7 Identity = 39/118 (33.05%), Postives = 52/118 (44.07%), Query Frame = 1
Query: 1 LATWVVQRRHLFQGKRVLELGSGCGLTGLACAGAGAASVTLTDFGCADPEERRRRSTFAPLRALENLGYNVALNSFTPEAHPGPAGSSGSGEAAGVKADPGAGGRCHVQSLDWHDCVK 354
++ W++ RHL QGKR+LELG+GCGL G+AC+ G V LTD A+ + A ++NL NV K G RC V DW+D K
Sbjct: 44 MSLWLLSHRHLLQGKRILELGAGCGLVGIACSQVGCKEVVLTDTANANV-----LGSSAGGELIKNLEENV-------------------------KQAVQHGSRCQVLEFDWNDEKK 131
BLAST of mRNA_S-ischiensis_contig7.17987.1 vs. uniprot
Match: L1IPK5_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IPK5_GUITC) HSP 1 Score: 58.2 bits (139), Expect = 3.240e-7 Identity = 39/118 (33.05%), Postives = 52/118 (44.07%), Query Frame = 1
Query: 1 LATWVVQRRHLFQGKRVLELGSGCGLTGLACAGAGAASVTLTDFGCADPEERRRRSTFAPLRALENLGYNVALNSFTPEAHPGPAGSSGSGEAAGVKADPGAGGRCHVQSLDWHDCVK 354
++ W++ RHL QGKR+LELG+GCGL G+AC+ G V LTD A+ + A ++NL NV K G RC V DW+D K
Sbjct: 30 MSLWLLSHRHLLQGKRILELGAGCGLVGIACSQVGCKEVVLTDTANANV-----LGSSAGGELIKNLEENV-------------------------KQAVQHGSRCQVLEFDWNDEKK 117
BLAST of mRNA_S-ischiensis_contig7.17987.1 vs. uniprot
Match: A0A7S3TPQ7_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TPQ7_EMIHU) HSP 1 Score: 57.0 bits (136), Expect = 1.180e-6 Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = 1
Query: 1 LATWVVQRRHLFQGKRVLELGSGCGLTGLACAGAGAASVTLTDFGCADPEERRRRSTFAPLRALENLGYNVALN 222
LA WV + R +G+RVLELG+GCGL GLA A AGAA+ T+TD AD + N+ +N+ LN
Sbjct: 297 LARWVCELRPRLRGRRVLELGAGCGLPGLAAAAAGAATTTITDL--AD-------------HTMRNIEHNIDLN 355
BLAST of mRNA_S-ischiensis_contig7.17987.1 vs. uniprot
Match: R1EW32_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EW32_EMIHU) HSP 1 Score: 53.5 bits (127), Expect = 1.700e-5 Identity = 32/59 (54.24%), Postives = 34/59 (57.63%), Query Frame = 1
Query: 28 HLFQGKRVLELGSGCGLTGLACAGAGAASVTLTDFGCADPEERRRRSTFAPLRALENLG 204
L GKRV+ELGSG GL GLACA AGA+ VTLTD C P RR L L G
Sbjct: 137 RLVAGKRVVELGSGTGLAGLACAAAGASHVTLTDLPCRLPLLRRNVRANGWLATLGGCG 195
BLAST of mRNA_S-ischiensis_contig7.17987.1 vs. uniprot
Match: A0A7R9YNV9_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YNV9_DIALT) HSP 1 Score: 51.2 bits (121), Expect = 5.950e-5 Identity = 35/78 (44.87%), Postives = 42/78 (53.85%), Query Frame = 1
Query: 1 LATWVVQRRHLFQGKRVLELGSGCGLTGLACAGAGAASVTLTDFG--CADPEERRRRSTFAPLRALENLGYNVALNSF 228
LATWV + K VLELGSG GL G ACA AGA SVTL+D CAD + +P L +L +V N+
Sbjct: 95 LATWVCADPSRVRDKAVLELGSGVGLAGFACACAGARSVTLSDMDRVCADDRD-------SPTGLLSSLRRSVHENAL 165
BLAST of mRNA_S-ischiensis_contig7.17987.1 vs. uniprot
Match: A0A662WR93_9STRA (MYND-type domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WR93_9STRA) HSP 1 Score: 52.0 bits (123), Expect = 6.850e-5 Identity = 33/80 (41.25%), Postives = 44/80 (55.00%), Query Frame = 1
Query: 1 LATWVVQRRHLFQGKRVLELGSGCGLTGLACAG-AGAASVTLTDFGCADPEERRRRSTFAPLRALENLGYNVALNSFTPE 237
L+ W++ RR LF+GK V ELGSGCG++GLA AA V L+D FA ++NL +NV LN T +
Sbjct: 211 LSRWIIDRRDLFEGKHVCELGSGCGVSGLAAYKYTDAARVVLSDL-------------FA--HTIQNLEHNVELNKPTAD 275
BLAST of mRNA_S-ischiensis_contig7.17987.1 vs. uniprot
Match: A0A8J6C9V0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C9V0_DIALT) HSP 1 Score: 51.6 bits (122), Expect = 7.950e-5 Identity = 49/148 (33.11%), Postives = 60/148 (40.54%), Query Frame = 1
Query: 1 LATWVVQRRHLFQGKRVLELGSGCGLTGLACAGAGAASVTLTDFG--CADPEERR-------RRSTFAPLRALENLGYNVALNSFTPEAHPGPAGSSGSGEAAGVKADPGAGGRCHVQSLDWHDCVKPGYSPSGGDVYETVLAADCLY 417
LATWV + K VLELGSG GL G ACA AGA SVTL+D CAD + RRS A L + A P P G A G G ++L D ++ V+A+DC+Y
Sbjct: 94 LATWVCADPSRVRDKAVLELGSGVGLAGFACACAGARSVTLSDMDRVCADDRDSPTGLLSSLRRSVHENALAEAVLVRRIDWREHVRAAAPSP--------GLGGAASRGGGREPQARAL------------VDDDRFDVVVASDCVY 221 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig7.17987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig7.17987.1 >prot_S-ischiensis_contig7.17987.1 ID=prot_S-ischiensis_contig7.17987.1|Name=mRNA_S-ischiensis_contig7.17987.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=149bp LATWVVQRRHLFQGKRVLELGSGCGLTGLACAGAGAASVTLTDFGCADPEback to top mRNA from alignment at S-ischiensis_contig7:543917..545550+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig7.17987.1 ID=mRNA_S-ischiensis_contig7.17987.1|Name=mRNA_S-ischiensis_contig7.17987.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1634bp|location=Sequence derived from alignment at S-ischiensis_contig7:543917..545550+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig7:543917..545550+ >mRNA_S-ischiensis_contig7.17987.1 ID=mRNA_S-ischiensis_contig7.17987.1|Name=mRNA_S-ischiensis_contig7.17987.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=894bp|location=Sequence derived from alignment at S-ischiensis_contig7:543917..545550+ (Schizocladia ischiensis KU_0333)back to top |