mRNA_S-ischiensis_contig7.17987.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig7.17987.1
Unique NamemRNA_S-ischiensis_contig7.17987.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig7.17987.1 vs. uniprot
Match: A0A7S3UR78_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UR78_HETAK)

HSP 1 Score: 92.4 bits (228), Expect = 1.980e-19
Identity = 57/145 (39.31%), Postives = 73/145 (50.34%), Query Frame = 1
Query:    1 LATWVVQRRHLFQGKRVLELGSGCGLTGLACAGAGAASVTLTDFGCADPEERRRRST----FAPLRALENLGYNVALNSFTPEAHPGPAGSSGSGEAAGVKADPGAGGRCHVQSLDWHDCVKPGYSPSGGDVYETVLAADCLYDE 423
            +++W+ Q  HLFQGK VLELGSGCGL G+  A  GA+ V LTDF   D   RRRR+       P   L NLGYN AL                       +AD        VQ+LDW +C+   + P     Y+ VLAA C+Y++
Sbjct:  152 MSSWMGQNNHLFQGKTVLELGSGCGLPGILAAKLGASKVALTDFASGDERARRRRNRGTVFLPPPDLLANLGYNAAL----------------------CRADDVT----EVQNLDWLECLSKSFQPK--QQYDWVLAAACIYNK 268          
BLAST of mRNA_S-ischiensis_contig7.17987.1 vs. uniprot
Match: A0A813EGF2_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EGF2_POLGL)

HSP 1 Score: 62.0 bits (149), Expect = 2.170e-8
Identity = 48/148 (32.43%), Postives = 65/148 (43.92%), Query Frame = 1
Query:    1 LATWVVQR---RHLFQGKRVLELGSGCGLTGLACAGAGAASVTLTDFG---CADPEERRRRSTFAPLRALENLGYNVALNSFTPEAHPGPAGSSGSGEAAGVKADPGAGGRCHVQSLDWHDCVK---PGYSPSGGDVYETVLAADCLY 417
            +A W +       LF+G+RVLELGSG GL G+A AG+ A SV LTDFG     D  ++   S   P + L NL  NV+ N                                 V  +DWHD +    P   P   + +E ++AAD +Y
Sbjct:  207 MAAWALAADGGAELFRGRRVLELGSGIGLLGVALAGSIAGSVVLTDFGFEEVVDGAQQEDSSRLIPPKLLRNLKDNVSANGLE---------------------------NAEVWRIDWHDFLTAPHPALEPI--ERFERLVAADVVY 325          
BLAST of mRNA_S-ischiensis_contig7.17987.1 vs. uniprot
Match: A0A813EG56_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EG56_POLGL)

HSP 1 Score: 62.0 bits (149), Expect = 2.370e-8
Identity = 48/148 (32.43%), Postives = 65/148 (43.92%), Query Frame = 1
Query:    1 LATWVVQR---RHLFQGKRVLELGSGCGLTGLACAGAGAASVTLTDFG---CADPEERRRRSTFAPLRALENLGYNVALNSFTPEAHPGPAGSSGSGEAAGVKADPGAGGRCHVQSLDWHDCVK---PGYSPSGGDVYETVLAADCLY 417
            +A W +       LF+G+RVLELGSG GL G+A AG+ A SV LTDFG     D  ++   S   P + L NL  NV+ N                                 V  +DWHD +    P   P   + +E ++AAD +Y
Sbjct:  198 MAAWALAADGGAELFRGRRVLELGSGIGLLGVALAGSIAGSVVLTDFGFEEVVDGAQQEDSSRLIPPKLLRNLKDNVSANGLE---------------------------NAEVWRIDWHDFLTAPHPALEPI--ERFERLVAADVVY 316          
BLAST of mRNA_S-ischiensis_contig7.17987.1 vs. uniprot
Match: A0A7S4UKI5_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UKI5_GUITH)

HSP 1 Score: 58.2 bits (139), Expect = 2.000e-7
Identity = 39/118 (33.05%), Postives = 52/118 (44.07%), Query Frame = 1
Query:    1 LATWVVQRRHLFQGKRVLELGSGCGLTGLACAGAGAASVTLTDFGCADPEERRRRSTFAPLRALENLGYNVALNSFTPEAHPGPAGSSGSGEAAGVKADPGAGGRCHVQSLDWHDCVK 354
            ++ W++  RHL QGKR+LELG+GCGL G+AC+  G   V LTD   A+        + A    ++NL  NV                         K     G RC V   DW+D  K
Sbjct:   44 MSLWLLSHRHLLQGKRILELGAGCGLVGIACSQVGCKEVVLTDTANANV-----LGSSAGGELIKNLEENV-------------------------KQAVQHGSRCQVLEFDWNDEKK 131          
BLAST of mRNA_S-ischiensis_contig7.17987.1 vs. uniprot
Match: L1IPK5_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IPK5_GUITC)

HSP 1 Score: 58.2 bits (139), Expect = 3.240e-7
Identity = 39/118 (33.05%), Postives = 52/118 (44.07%), Query Frame = 1
Query:    1 LATWVVQRRHLFQGKRVLELGSGCGLTGLACAGAGAASVTLTDFGCADPEERRRRSTFAPLRALENLGYNVALNSFTPEAHPGPAGSSGSGEAAGVKADPGAGGRCHVQSLDWHDCVK 354
            ++ W++  RHL QGKR+LELG+GCGL G+AC+  G   V LTD   A+        + A    ++NL  NV                         K     G RC V   DW+D  K
Sbjct:   30 MSLWLLSHRHLLQGKRILELGAGCGLVGIACSQVGCKEVVLTDTANANV-----LGSSAGGELIKNLEENV-------------------------KQAVQHGSRCQVLEFDWNDEKK 117          
BLAST of mRNA_S-ischiensis_contig7.17987.1 vs. uniprot
Match: A0A7S3TPQ7_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TPQ7_EMIHU)

HSP 1 Score: 57.0 bits (136), Expect = 1.180e-6
Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = 1
Query:    1 LATWVVQRRHLFQGKRVLELGSGCGLTGLACAGAGAASVTLTDFGCADPEERRRRSTFAPLRALENLGYNVALN 222
            LA WV + R   +G+RVLELG+GCGL GLA A AGAA+ T+TD   AD               + N+ +N+ LN
Sbjct:  297 LARWVCELRPRLRGRRVLELGAGCGLPGLAAAAAGAATTTITDL--AD-------------HTMRNIEHNIDLN 355          
BLAST of mRNA_S-ischiensis_contig7.17987.1 vs. uniprot
Match: R1EW32_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EW32_EMIHU)

HSP 1 Score: 53.5 bits (127), Expect = 1.700e-5
Identity = 32/59 (54.24%), Postives = 34/59 (57.63%), Query Frame = 1
Query:   28 HLFQGKRVLELGSGCGLTGLACAGAGAASVTLTDFGCADPEERRRRSTFAPLRALENLG 204
             L  GKRV+ELGSG GL GLACA AGA+ VTLTD  C  P  RR       L  L   G
Sbjct:  137 RLVAGKRVVELGSGTGLAGLACAAAGASHVTLTDLPCRLPLLRRNVRANGWLATLGGCG 195          
BLAST of mRNA_S-ischiensis_contig7.17987.1 vs. uniprot
Match: A0A7R9YNV9_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YNV9_DIALT)

HSP 1 Score: 51.2 bits (121), Expect = 5.950e-5
Identity = 35/78 (44.87%), Postives = 42/78 (53.85%), Query Frame = 1
Query:    1 LATWVVQRRHLFQGKRVLELGSGCGLTGLACAGAGAASVTLTDFG--CADPEERRRRSTFAPLRALENLGYNVALNSF 228
            LATWV       + K VLELGSG GL G ACA AGA SVTL+D    CAD  +       +P   L +L  +V  N+ 
Sbjct:   95 LATWVCADPSRVRDKAVLELGSGVGLAGFACACAGARSVTLSDMDRVCADDRD-------SPTGLLSSLRRSVHENAL 165          
BLAST of mRNA_S-ischiensis_contig7.17987.1 vs. uniprot
Match: A0A662WR93_9STRA (MYND-type domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WR93_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 6.850e-5
Identity = 33/80 (41.25%), Postives = 44/80 (55.00%), Query Frame = 1
Query:    1 LATWVVQRRHLFQGKRVLELGSGCGLTGLACAG-AGAASVTLTDFGCADPEERRRRSTFAPLRALENLGYNVALNSFTPE 237
            L+ W++ RR LF+GK V ELGSGCG++GLA      AA V L+D              FA    ++NL +NV LN  T +
Sbjct:  211 LSRWIIDRRDLFEGKHVCELGSGCGVSGLAAYKYTDAARVVLSDL-------------FA--HTIQNLEHNVELNKPTAD 275          
BLAST of mRNA_S-ischiensis_contig7.17987.1 vs. uniprot
Match: A0A8J6C9V0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C9V0_DIALT)

HSP 1 Score: 51.6 bits (122), Expect = 7.950e-5
Identity = 49/148 (33.11%), Postives = 60/148 (40.54%), Query Frame = 1
Query:    1 LATWVVQRRHLFQGKRVLELGSGCGLTGLACAGAGAASVTLTDFG--CADPEERR-------RRSTFAPLRALENLGYNVALNSFTPEAHPGPAGSSGSGEAAGVKADPGAGGRCHVQSLDWHDCVKPGYSPSGGDVYETVLAADCLY 417
            LATWV       + K VLELGSG GL G ACA AGA SVTL+D    CAD  +         RRS      A   L   +        A P P          G  A  G G     ++L               D ++ V+A+DC+Y
Sbjct:   94 LATWVCADPSRVRDKAVLELGSGVGLAGFACACAGARSVTLSDMDRVCADDRDSPTGLLSSLRRSVHENALAEAVLVRRIDWREHVRAAAPSP--------GLGGAASRGGGREPQARAL------------VDDDRFDVVVASDCVY 221          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig7.17987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A7S3UR78_HETAK1.980e-1939.31Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A813EGF2_POLGL2.170e-832.43Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A813EG56_POLGL2.370e-832.43Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A7S4UKI5_GUITH2.000e-733.05Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
L1IPK5_GUITC3.240e-733.05Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S3TPQ7_EMIHU1.180e-644.59Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
R1EW32_EMIHU1.700e-554.24Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7R9YNV9_DIALT5.950e-544.87Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A662WR93_9STRA6.850e-541.25MYND-type domain-containing protein n=2 Tax=Nothop... [more]
A0A8J6C9V0_DIALT7.950e-533.11Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig7contigS-ischiensis_contig7:543917..545550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue8.4e-09
Seed eggNOG ortholog55529.EKX48089
EggNOG free text desc.methyltransferase activity
EggNOG OGsKOG2497@1,KOG2497@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons2
Model size456
Cds size447
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig7.17987.1prot_S-ischiensis_contig7.17987.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig7 543917..545543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817151.9249809-CDS-S-ischiensis_contig7:543916..5441531622817151.9249809-CDS-S-ischiensis_contig7:543916..544153Schizocladia ischiensis KU_0333CDSS-ischiensis_contig7 543917..544153 +
1695740891.6030085-CDS-S-ischiensis_contig7:543916..5441531695740891.6030085-CDS-S-ischiensis_contig7:543916..544153Schizocladia ischiensis KU_0333CDSS-ischiensis_contig7 543917..544153 +
1622817151.938801-CDS-S-ischiensis_contig7:545333..5455431622817151.938801-CDS-S-ischiensis_contig7:545333..545543Schizocladia ischiensis KU_0333CDSS-ischiensis_contig7 545334..545543 +
1695740891.6163301-CDS-S-ischiensis_contig7:545333..5455431695740891.6163301-CDS-S-ischiensis_contig7:545333..545543Schizocladia ischiensis KU_0333CDSS-ischiensis_contig7 545334..545543 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817151.9496875-UTR-S-ischiensis_contig7:545543..5455501622817151.9496875-UTR-S-ischiensis_contig7:545543..545550Schizocladia ischiensis KU_0333UTRS-ischiensis_contig7 545544..545550 +
1695740891.6279252-UTR-S-ischiensis_contig7:545543..5455501695740891.6279252-UTR-S-ischiensis_contig7:545543..545550Schizocladia ischiensis KU_0333UTRS-ischiensis_contig7 545544..545550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig7.17987.1

>prot_S-ischiensis_contig7.17987.1 ID=prot_S-ischiensis_contig7.17987.1|Name=mRNA_S-ischiensis_contig7.17987.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=149bp
LATWVVQRRHLFQGKRVLELGSGCGLTGLACAGAGAASVTLTDFGCADPE
ERRRRSTFAPLRALENLGYNVALNSFTPEAHPGPAGSSGSGEAAGVKADP
GAGGRCHVQSLDWHDCVKPGYSPSGGDVYETVLAADCLYDEKVRGQYI*
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mRNA from alignment at S-ischiensis_contig7:543917..545550+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig7.17987.1 ID=mRNA_S-ischiensis_contig7.17987.1|Name=mRNA_S-ischiensis_contig7.17987.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1634bp|location=Sequence derived from alignment at S-ischiensis_contig7:543917..545550+ (Schizocladia ischiensis KU_0333)
CTCGCGACGTGGGTGGTGCAGCGGCGGCACCTCTTCCAGGGCAAGAGGGT CCTGGAGCTGGGCAGCGGCTGCGGGCTGACAGGGCTGGCCTGCGCCGGTG CGGGGGCGGCCTCGGTCACCCTCACGGACTTTGGCTGTGCTGATCCGGAG GAGCGGAGGCGGCGCTCCACCTTCGCGCCGCTGAGGGCGCTGGAGAACCT CGGCTACAACGTGGCGCTTAATTCTTTTACCCCTGAGGTAAGTGCTTCGA AGTATAAGGATAGGGTTTTAGTGTGCAAGTCCAATTTAGCAGGGTTAAAG GGTTAACTCCACGTTCGCGCCGCTCAGGGCGCTGGAGAACCTCCACTACA ATGTGGCGCTTAACTTTGAGGTGATGGAATGTCAAACTATTACTTATGAA TCGGACCCCACTCCAAATCACATCACTTCAAATCTCATCCCTGGCGATCG TGTCCTCTGCATCTCGCCAGATGGCCCAATCACCTTGATGCCTCAAGCAT TTCAGAGCACATCAACTACAGGACCGTCCCCGTAAATTTCCAGGAAAACA ACAACTGTCCCCGCCCCTCCCTCGCTGGCACGGGCTGCGCGTTCCTTACG TGCTTCCCTGCACTGGCCTGCTGCCGCCAGTGATGGAATATCTAAGCAAA TCAACCTATTTATCGACAGTACGGATCTATATTTGAGTGGTAGATAGGCG GCGAGTCATATCTACAGATAGTCGAAAAAATAAACTAGCAAAAGCTATTT CCCACTCGCTTATTTTCTTCCCACACAAAATAGTTTGACCCACACTAAAT CTAAGTAGTTAGTATTTAAAGGAACAACACGGGGCGAGGTGCGGGCCACG TCGCTAGAGACCTCAACAATGGCCCTTCCTTAGCTCGCCAGGGGAAAGGT TGTGTGGGGAAGGGGAGGTGGATGGGGGGGAGGAAGAGGGGGAGGAGGAG GAGGAGGAGGGGGGGGGGGGGGGGGAACGAGGGAGAGGAATGGGACAGGG CGCGTGTGTGCACCCCTCGGGGGCGTGGCAGGCGGCGTTGCGGCAGGCAG TGACAGAGTAGGCAGAACCACCACACCGCATACCTGCAGCGGAGAAGTGA GCAAACAGGGAACACCGTAGTTAGTAATGGCGCCCACCAAATCAGTGGAG CCCGATAACCATCTACTTGTATATATTCCATAATTGGCCGCCGCAAGAAG GGGGAGGGGGAGGCAAAATCACCGACACACATGGGGACGGCAGCCTCCCC AACAGCCGTGGGGCTTCCCGAGGCCTCCAAGGCAGGGTTGGCACTTAACC CCCAAGTGGTGCCCTTTTAGGCCCTTAGGTCTAATTAGAGCTAATTATGG AGAATTGGGCCTAAAATGAAGGCTGACTAGGCCCTAGTTAACCTCTAGCT GCCAACCCTGCTTCAAGGCGCATCCTGGGCCGGCGGGGAGTTCGGGAAGT GGGGAGGCGGCGGGTGTGAAAGCGGACCCCGGGGCTGGAGGGCGTTGCCA TGTGCAGAGCCTCGACTGGCACGATTGTGTCAAGCCGGGGTACTCCCCCT CGGGCGGGGATGTGTACGAAACAGTCCTGGCGGCGGACTGTCTGTACGAC GAGAAGGTGAGGGGACAATATATATGAATGTTAT
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Coding sequence (CDS) from alignment at S-ischiensis_contig7:543917..545550+

>mRNA_S-ischiensis_contig7.17987.1 ID=mRNA_S-ischiensis_contig7.17987.1|Name=mRNA_S-ischiensis_contig7.17987.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=894bp|location=Sequence derived from alignment at S-ischiensis_contig7:543917..545550+ (Schizocladia ischiensis KU_0333)
CTCGCGACGTGGGTGGTGCAGCGGCGGCACCTCTTCCAGGGCAAGAGGGT
CCTGGAGCTGGGCAGCGGCTGCGGGCTGACAGGGCTGGCCTGCGCCGGTG
CGGGGGCGGCCTCGGTCACCCTCACGGACTTTGGCTGTGCTGATCCGGAG
GAGCGGAGGCGGCGCTCCACCTTCGCGCCGCTGAGGGCGCTGGAGAACCT
CGGCTACAACGTGGCGCTTAATTCTTTTACCCCTGAGCTCGCGACGTGGG
TGGTGCAGCGGCGGCACCTCTTCCAGGGCAAGAGGGTCCTGGAGCTGGGC
AGCGGCTGCGGGCTGACAGGGCTGGCCTGCGCCGGTGCGGGGGCGGCCTC
GGTCACCCTCACGGACTTTGGCTGTGCTGATCCGGAGGAGCGGAGGCGGC
GCTCCACCTTCGCGCCGCTGAGGGCGCTGGAGAACCTCGGCTACAACGTG
GCGCTTAATTCTTTTACCCCTGAGGCGCATCCTGGGCCGGCGGGGAGTTC
GGGAAGTGGGGAGGCGGCGGGTGTGAAAGCGGACCCCGGGGCTGGAGGGC
GTTGCCATGTGCAGAGCCTCGACTGGCACGATTGTGTCAAGCCGGGGTAC
TCCCCCTCGGGCGGGGATGTGTACGAAACAGTCCTGGCGGCGGACTGTCT
GTACGACGAGAAGGTGAGGGGACAATATATATGAGCGCATCCTGGGCCGG
CGGGGAGTTCGGGAAGTGGGGAGGCGGCGGGTGTGAAAGCGGACCCCGGG
GCTGGAGGGCGTTGCCATGTGCAGAGCCTCGACTGGCACGATTGTGTCAA
GCCGGGGTACTCCCCCTCGGGCGGGGATGTGTACGAAACAGTCCTGGCGG
CGGACTGTCTGTACGACGAGAAGGTGAGGGGACAATATATATGA
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