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Homology
BLAST of mRNA_S-ischiensis_contig15.3844.1 vs. uniprot
Match: A0A6H5KRZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ3_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 6.100e-20 Identity = 62/136 (45.59%), Postives = 80/136 (58.82%), Query Frame = 1
Query: 1 ARIVELELAELQRKEAEANLKVKTDENASLQVQVLQLQNVVQALSHTPRPDHEGEARAQAEGAGPDDPSGLGSLPL-RETPEVEPGVMLLLHRKPWLPAVLEGIRKEVAVYEWQAWDSHNGWSANPASLPPALRRL 405
AR+VELEL QR EA ++ KTD + L+VQV QL+N+VQ+LSH + E +A Q A + PL R+ P V+P V+LLLHR PW VLEGIRKE + +EWQ DS WS+ + P L L
Sbjct: 253 ARVVELEL---QRAEAADEMREKTDRSIRLEVQVEQLKNIVQSLSHASSRE-ETQAWGQGSSATTRTQETVDLDPLLRDVPGVDPSVLLLLHRTPWADVVLEGIRKEESCFEWQGKDSRGAWSSRLGAFPTELSSL 384
BLAST of mRNA_S-ischiensis_contig15.3844.1 vs. uniprot
Match: D7FLV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV6_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 1.870e-16 Identity = 57/117 (48.72%), Postives = 72/117 (61.54%), Query Frame = 1
Query: 1 ARIVELELAELQRKEAEANLKVKTDENASLQVQVLQLQNVVQALSH-TPRPDHEGEARAQAEGAGPDDPSGLGSLPLRETPEVEPGVMLLLHRKPWLPAVLEGIRKEVAVYEWQAWD 348
AR+VELEL QR EA ++ KTD + L+VQV QL+N+VQ+LSH + R + +G + A L L LR+ P V P V+LLLHR PW VLEGIRKE A +EWQ D
Sbjct: 248 ARVVELEL---QRAEAADEMREKTDRSIRLEVQVEQLKNIVQSLSHASSREETQGWGQGSATTTRIQGTVDLDPL-LRDVPGVNPSVLLLLHRTPWADVVLEGIRKEEACFEWQGKD 360
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 412 |
| Cds size | 411 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815739.0098267-CDS-S-ischiensis_contig15:2618292..2618353 | 1622815739.0098267-CDS-S-ischiensis_contig15:2618292..2618353 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig15 2618293..2618353 - |
| 1695739885.963628-CDS-S-ischiensis_contig15:2618292..2618353 | 1695739885.963628-CDS-S-ischiensis_contig15:2618292..2618353 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig15 2618293..2618353 - |
| 1622815739.0264027-CDS-S-ischiensis_contig15:2619564..2619671 | 1622815739.0264027-CDS-S-ischiensis_contig15:2619564..2619671 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig15 2619565..2619671 - |
| 1695739885.9733708-CDS-S-ischiensis_contig15:2619564..2619671 | 1695739885.9733708-CDS-S-ischiensis_contig15:2619564..2619671 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig15 2619565..2619671 - |
| 1622815739.0423043-CDS-S-ischiensis_contig15:2620012..2620156 | 1622815739.0423043-CDS-S-ischiensis_contig15:2620012..2620156 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig15 2620013..2620156 - |
| 1695739885.983787-CDS-S-ischiensis_contig15:2620012..2620156 | 1695739885.983787-CDS-S-ischiensis_contig15:2620012..2620156 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig15 2620013..2620156 - |
| 1622815739.0578609-CDS-S-ischiensis_contig15:2620393..2620492 | 1622815739.0578609-CDS-S-ischiensis_contig15:2620393..2620492 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig15 2620394..2620492 - |
| 1695739885.9940674-CDS-S-ischiensis_contig15:2620393..2620492 | 1695739885.9940674-CDS-S-ischiensis_contig15:2620393..2620492 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig15 2620394..2620492 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig15.3844.1 >prot_S-ischiensis_contig15.3844.1 ID=prot_S-ischiensis_contig15.3844.1|Name=mRNA_S-ischiensis_contig15.3844.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=137bp
ARIVELELAELQRKEAEANLKVKTDENASLQVQVLQLQNVVQALSHTPRP
DHEGEARAQAEGAGPDDPSGLGSLPLRETPEVEPGVMLLLHRKPWLPAVL
EGIRKEVAVYEWQAWDSHNGWSANPASLPPALRRLCD back to topmRNA from alignment at S-ischiensis_contig15:2618293..2620492- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig15.3844.1 ID=mRNA_S-ischiensis_contig15.3844.1|Name=mRNA_S-ischiensis_contig15.3844.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2200bp|location=Sequence derived from alignment at S-ischiensis_contig15:2618293..2620492- (Schizocladia ischiensis KU_0333)
GCAAGGATAGTGGAGCTGGAGCTGGCCGAGCTGCAGAGGAAAGAGGCGGA
GGCAAATCTCAAGGTCAAGACGGACGAGAACGCCTCGCTGCAAGTGCAGG
TGGGTGGGTTGCAAGTATTGCGAGTAAGTACAGTAGTAGCAGTGCTGTAG
TAGCGCTACTGGCAGTCCGACTCGCGTTGGTCCTCGATCGATATTCTGTA
TGTTTGGCTTCGACGAGGATGATTCAATGCCAGAAACTAACCCAGACCTC
TCACACAGCGCCACCCCCCCTGGGCCCCGCCACTCCCTTGCCGCAAACTG
CGGGCGCCCCAACCCTGCGGCGCACGCCATCCCCAGGTGCTGCAGCTTCA
GAACGTGGTGCAGGCTCTGAGCCACACGCCCCGCCCGGACCACGAGGGCG
AGGCTCGGGCCCAAGCGGAGGGGGCGGGGCCTGACGACCCATCGGGCCTG
GGGAGCCTGCCGCTGAGGGAGACGCCCGAGGTAGGTGGCGGTGGACGGCG
GGCGGCGGCGGCGGCGGCGGCGGCGGCGACCCCCGACTCCCCCAGACGAT
GCGGGTGTCCGGCGGTTACGTTGACGTTGACGTGACCGATTTGAGCCGAG
CGCTAGAGGGCGTTTGTCGCCTTCACCCGGGCGGCGGTAGCTGTGCGATA
GGGTGGTGTGTGATTGCTGCAGTACTTCCGAGCACTGCTTCGAGAAGTAG
TACTTCGAAGTATCCTTTAGCGTACCGCCATCTTCAGAGCGGTTGACGAT
GATATGCACGGCTATGGCAAGCTCTGCTGGAAGTCACCCCCCCAGACCCC
CCCCCCCCCGGTGTGGACCAGGTGGAGCCGGGCGTGATGCTGCTGCTGCA
CCGAAAGCCGTGGCTGCCGGCCGTGCTGGAGGGCATTCGAAAGGAAGTGG
CTGTGTACGAGTGGCAAGCCTGGGACAGGTAGGTACTGTGTGTCACTACT
GTACTTGGAGTAGATAACAGAAGCAGGAACACTATGCATTGTGTACGTCC
ATGTAGTACGGAAGGAGGCAGTTAGGACATCGGACCTGTTTTCGGGGGGG
GGGGGGCTTCAGTATGCGATAGCCTGGGAAGGAAGCTTTCGTTTTTTTTC
AGGGTCGGTCGTTCTTCGTGACGCAGCTCCGGTCTCGGGTCGCCAATGTC
TCATGCTTGTTGCGATCCGTCCACTGCTCGAACAGCTTGTGGTGGATGTT
CGGAGTGTGAACTTTGCATCGCGACTGCAGTACAGCAGTTTGTTCTGTTG
CAGTAGAGTACAGTACTTGTGTACTGTAGTACAGTGGTACAGTGCTGCTG
TAATACAGTAGAGTAGTACTGTAAAGTAGGGGGGTTGCTGTACTTAGTAG
ATGATTGTACAGCATCAACCGGAACAACACGGGGCGAGGTGCGGGCCGTC
ACTAAAGTAGTACAGTGCTGTACAGTAGTACTACATACCTTGTACATGGT
ATTGGTTTATACGTACGGTGCTTTGGAGTATAGCACTACTGTACTGTAGT
AGTAATAGCAACAGCGGCAGGCACTCGTGACCTGTGCACCTTGCCTGTGG
TATGTCTCGTATTTCGTACTTTGCGTGTACAATCACTTTCAGCAGTTGCC
GCCGTTTGCGGGCATCGGCTATCGGGACAGCAAACCACATACAGCGGGAG
TCTCGAGCAGTGTCGTGGAACGAGTGTACAAATAGTTTATGGTCCTGTAG
CAGTTAAGCGGGTGTGCTCGCCTTGTGCTTGCCGTGGGGCTGTCCCGAGG
CCACAGAGACCCAAACATTACCAAGTAAGACTGACGTTCTCAAAGTACTG
TAGTACAAAAATGATGCGGGAAGTACACTACTGTACACTACGTGGTAGTA
CAGAGTACAGTAGTGACACTTCCAGCGTACAGTAGTGCTTCCCCGGAAGG
GCATGGCCATGGCAGCAGGTTGAGTAGCAGCAGCAGTAGCAGTAGGTGGC
ATGCAGCAGCAACAGCAGCAGTAGCAGCAGCAGCAGTGATAGCAATAGCA
GTGGCAGCAGCGAAACTGCCGTACTAGCGGGCACTGGTCATTGCCCCCCC
CTCCCACCCCCCTGACCAATGAACGCCTCCGGCCCCGTGAACACTCTGGC
TTGGTTGCACGCTCGCGTGCTGGGCCGTCTCGCCTCCAGTCACAACGGAT
GGAGCGCGAACCCGGCCAGCCTGCCGCCCGCGCTGCGGCGACTGTGCGAC
back to topCoding sequence (CDS) from alignment at S-ischiensis_contig15:2618293..2620492- >mRNA_S-ischiensis_contig15.3844.1 ID=mRNA_S-ischiensis_contig15.3844.1|Name=mRNA_S-ischiensis_contig15.3844.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=822bp|location=Sequence derived from alignment at S-ischiensis_contig15:2618293..2620492- (Schizocladia ischiensis KU_0333)
GCAAGGATAGTGGAGCTGGAGCTGGCCGAGCTGCAGAGGAAAGAGGCGGA
GGCAAATCTCAAGGTCAAGACGGACGAGAACGCCTCGCTGCAAGTGCAGG
CAAGGATAGTGGAGCTGGAGCTGGCCGAGCTGCAGAGGAAAGAGGCGGAG
GCAAATCTCAAGGTCAAGACGGACGAGAACGCCTCGCTGCAAGTGCAGGT
GCTGCAGCTTCAGAACGTGGTGCAGGCTCTGAGCCACACGCCCCGCCCGG
ACCACGAGGGCGAGGCTCGGGCCCAAGCGGAGGGGGCGGGGCCTGACGAC
CCATCGGGCCTGGGGAGCCTGCCGCTGAGGGAGACGCCCGAGGTGCTGCA
GCTTCAGAACGTGGTGCAGGCTCTGAGCCACACGCCCCGCCCGGACCACG
AGGGCGAGGCTCGGGCCCAAGCGGAGGGGGCGGGGCCTGACGACCCATCG
GGCCTGGGGAGCCTGCCGCTGAGGGAGACGCCCGAGGTGGAGCCGGGCGT
GATGCTGCTGCTGCACCGAAAGCCGTGGCTGCCGGCCGTGCTGGAGGGCA
TTCGAAAGGAAGTGGCTGTGTACGAGTGGCAAGCCTGGGACAGGTGGAGC
CGGGCGTGATGCTGCTGCTGCACCGAAAGCCGTGGCTGCCGGCCGTGCTG
GAGGGCATTCGAAAGGAAGTGGCTGTGTACGAGTGGCAAGCCTGGGACAG
TCACAACGGATGGAGCGCGAACCCGGCCAGCCTGCCGCCCGCGCTGCGGC
GACTGTGCGACTCACAACGGATGGAGCGCGAACCCGGCCAGCCTGCCGCC
CGCGCTGCGGCGACTGTGCGAC back to top
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