mRNA_S-ischiensis_contig15.3791.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3791.1
Unique NamemRNA_S-ischiensis_contig15.3791.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig15.3791.1 vs. uniprot
Match: D8LGD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD3_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.050e-13
Identity = 47/94 (50.00%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:   28 STVYATRWRAFLRRSGRHYDSEAQIRKRLSLVRRAHRDAPVTNAEAFVALALAGGQAGEAAGLLHDERLRGEVLAVAAMMDVDAIMRAAAAAAE 309
            S  Y  RW  FL R+ RH+D EA +RKR+S++RRAH D  V+N  AFVALA + G++ EAA +LH  R + E   VA M+DV A +  A  AAE
Sbjct: 2028 SRQYLRRWEVFLSRAHRHFDGEADVRKRMSVIRRAHPD--VSNEVAFVALAQSRGRSSEAAAVLHLPRAKDEAALVAMMLDVTAFIGLAREAAE 2119
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BLAST of mRNA_S-ischiensis_contig15.3791.1 vs. uniprot
Match: A0A6H5KU38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU38_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.190e-12
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:   28 STVYATRWRAFLRRSGRHYDSEAQIRKRLSLVRRAHRDAPVTNAEAFVALALAGGQAGEAAGLLHDERLRGEVLAVAAMMDVDAIMRAAAAAAE 309
            S  Y   W  FL R+ RH+D EA +RKR+S++RRAH D  V+N  AFVALA + G++ EAA +LH  R + E   VA M++V A +  A  AAE
Sbjct: 1976 SRQYLRMWEVFLSRAHRHFDGEADVRKRMSVIRRAHPD--VSNEVAFVALAQSRGRSSEAAAVLHLPRAKDEAALVAMMLNVTAFIGLAREAAE 2067
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGD3_ECTSI1.050e-1350.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU38_9PHAE3.190e-1247.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:2150409..2152883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_002540.1
Exons2
Model size338
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815767.4532561-CDS-S-ischiensis_contig15:2150408..21505011622815767.4532561-CDS-S-ischiensis_contig15:2150408..2150501Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2150409..2150501 +
1695739904.2239838-CDS-S-ischiensis_contig15:2150408..21505011695739904.2239838-CDS-S-ischiensis_contig15:2150408..2150501Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2150409..2150501 +
1622815767.470087-CDS-S-ischiensis_contig15:2152640..21528831622815767.470087-CDS-S-ischiensis_contig15:2152640..2152883Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2152641..2152883 +
1695739904.2329154-CDS-S-ischiensis_contig15:2152640..21528831695739904.2329154-CDS-S-ischiensis_contig15:2152640..2152883Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 2152641..2152883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3791.1prot_S-ischiensis_contig15.3791.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 2150409..2152883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3791.1

>prot_S-ischiensis_contig15.3791.1 ID=prot_S-ischiensis_contig15.3791.1|Name=mRNA_S-ischiensis_contig15.3791.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=112bp
AGSVARSGGSTVYATRWRAFLRRSGRHYDSEAQIRKRLSLVRRAHRDAPV
TNAEAFVALALAGGQAGEAAGLLHDERLRGEVLAVAAMMDVDAIMRAAAA
AAEAWQLRAVSS
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mRNA from alignment at S-ischiensis_contig15:2150409..2152883+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3791.1 ID=mRNA_S-ischiensis_contig15.3791.1|Name=mRNA_S-ischiensis_contig15.3791.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2475bp|location=Sequence derived from alignment at S-ischiensis_contig15:2150409..2152883+ (Schizocladia ischiensis KU_0333)
GCTGGATCCGTGGCGAGGAGCGGAGGGTCTACGGTGTACGCGACGCGATG
GAGGGCGTTCTTGCGGCGCTCGGGAAGGCACTATGACAGCGAGGTGAGAT
GATGAGCCGTCGAAGTATAAGAGAAGAAACGAGCCATGTGTTGCAGAGAA
GAGAAGGGAAGAGGAGAGGAGGAGAGGGAAACGGCGGGTGCCATACAAAA
GGAGAGGAGTCATATAAAGGAGAGAAGTCGTGTATTGTGTGTGCTTCGTA
ATTATTTCCCAAGTAGAGACGGAAAGGTATTCGAGCGTTTGTCACGGAGG
AGAGAAAGAATCCGTATGTTGTTGGAGTACTACTGTAGAGTAGCAGGGGA
GAGGAGAAGAGAGGGGAGGGAAAGAGAAGAGGAGAGAGCACCACGACACC
GAGGTGGGAGGAGACGATCCTACGTACTGGTTGGATTATCACTTGGGGAA
AGTTTACGAAACTTCCAGAGTACGGGGAGTGAAAACCCGACCCGTGTCTT
CGGTCGCATCTGCACCCGAGCCCGGCAGAACGAGGAGTCTGGACGGACGG
ATTAGAGGGAGAAGAAGACACGCGCCCGCACACACACACACACACACACC
AGTTGTTGGCAAGTAGTACAGTAGTGAGGTTTGCCAAGTGTACTGTATAC
TGGGAAGCACTTGGAATGCCCCAGCGGTACTTCAAAGAACGTGCTTCCAC
AGTAGCGAAAGTACAGCACAGCACAATACAGCACAGTACAGTACAGCAAA
GTACAGTACAGCACAATACAGTACAGCACAGTACAGCTCAGGACAGCACA
GTACAGTACAGTACAGTACCGCACAGTACACCGCACAGTACAGCACAGCA
CAGTACAGCACAGCACAGTACAGCACAGTGCAGTACAGCACAGTACAGTA
CAGCACGGTACAGTACAACACGGTACAGTACAGCACAGTGCAGTACAGTA
CAGCACAGTGCAGTGCAGCATAGTAAAGTGCAGCACAGTACAACTCAGGA
CAGGACAGGACAGTACAGTCCAGTATAGCACAGTGCAGTACAGCACAGCA
CAGTACAGTACAGAAGTGCCACAGTACAGTAGTGTTGTACGAGCTCTGTA
CTGCACATCACTGTGAGCTCTACTGCCTACTGTGTGTGGCACTGTGGACG
GTAGGAGCAGGTACCCTGTACAGTGTAGCGTGTACAGTAGCACTTGTGCT
GCACGTAGCACTGTAGCACAGCGTATCGCTTCCGGGAATTTCTACTCCAT
GTACGAGTAGAATGTACTCACGTACACAGTACAGCACAGCACAGTACCTT
GCAGAAGTGCCACAGTACAGTAGTGTTGTACGAGTACTGTACTGCACACC
ACTGTGAGCTTTACTGCCTGCTGTGTGTGGCACTGTGGACCGTAGGAGCA
GGTACCCTGTACAGTGTAGCGTGTACAGTAGCACTTGTGCGGTACGTAGC
ACTGTAGCACAGCGTATCGCTTCCGGAAGTTTCTACTCCATGCGCGAGTA
GAATGTACAGTAGTACAGTAGTAGTGCAGTGTAGCAGTAGTACAGTACTT
CGAAGTAGCATTAACAGGCACAACACAGGGTGAGGTGCAGGCCAGTATGG
TGGTGGCGGTGGTAGTGTAGTACTTCCAGGTATTGTTTGTGGGACAGGCA
AGCGAGTGGGAAATAAGTTTGAATAGGCGGTGTCCCTACTGTGTAGCAGG
TGTGAAGGACGTGGCAGGGCAGCAAGCAGAGTAGCAGCAGCTCGGCGGTC
GGTTCCCTGCAAAACACCCAAGTAGTTAGTAGGCTCCGTTGCAAAACCCA
GGTAGTTAAGAGGCTCAACACCCAAGTACTTCGAAGTAGTTAATAGGCTC
AGTTATAAAATACCCAAGCAGTTAAACAGGCTCAGTTACAACACACCCAC
GCAGTTGGTAAGAGGCTCGGTTACAGCAAGGCTCGGCTACAGCACCGAGG
TAGTTAAGAGGCTCCACACCCAAGTACTACTCGTATTACTTCGAAGTAGT
TAATAGGCTCAGTTATAAACACCCAAGTAGCTAAGAGGCTCAGGTGCGAA
ACACCCCAGCAGCCAACGAAGGCAACGCACAGGGCAGGCAAGCGGACCAC
ATACTTCAAAACCCTATAGTAGTGCAATCCCAAGTACTACACTAGGCCCT
TGCAAGCACTCGACACAGGCCTCCCCCCGCGTGCAAATCCCAACAACCCC
TCTGCCCCCCCCCCCCGCCCCCGCCCCCCCAGGCCCAAATTCGCAAGCGG
CTCTCCCTTGTCCGCCGCGCCCACCGCGACGCCCCCGTCACCAACGCAGA
GGCGTTCGTCGCCCTCGCCCTGGCGGGGGGCCAGGCCGGCGAGGCGGCGG
GCCTCCTCCACGACGAACGCCTCCGGGGGGAGGTTCTGGCCGTGGCCGCC
ATGATGGACGTGGACGCCATCATGCGCGCCGCCGCCGCCGCCGCCGAAGC
CTGGCAGCTCCGCGCCGTCTCCTCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig15:2150409..2152883+

>mRNA_S-ischiensis_contig15.3791.1 ID=mRNA_S-ischiensis_contig15.3791.1|Name=mRNA_S-ischiensis_contig15.3791.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=672bp|location=Sequence derived from alignment at S-ischiensis_contig15:2150409..2152883+ (Schizocladia ischiensis KU_0333)
GCTGGATCCGTGGCGAGGAGCGGAGGGTCTACGGTGTACGCGACGCGATG
GAGGGCGTTCTTGCGGCGCTCGGGAAGGCACTATGACAGCGAGGCTGGAT
CCGTGGCGAGGAGCGGAGGGTCTACGGTGTACGCGACGCGATGGAGGGCG
TTCTTGCGGCGCTCGGGAAGGCACTATGACAGCGAGGCCCAAATTCGCAA
GCGGCTCTCCCTTGTCCGCCGCGCCCACCGCGACGCCCCCGTCACCAACG
CAGAGGCGTTCGTCGCCCTCGCCCTGGCGGGGGGCCAGGCCGGCGAGGCG
GCGGGCCTCCTCCACGACGAACGCCTCCGGGGGGAGGTTCTGGCCGTGGC
CGCCATGATGGACGTGGACGCCATCATGCGCGCCGCCGCCGCCGCCGCCG
AAGCCTGGCAGCTCCGCGCCGTCTCCTCCGCCCAAATTCGCAAGCGGCTC
TCCCTTGTCCGCCGCGCCCACCGCGACGCCCCCGTCACCAACGCAGAGGC
GTTCGTCGCCCTCGCCCTGGCGGGGGGCCAGGCCGGCGAGGCGGCGGGCC
TCCTCCACGACGAACGCCTCCGGGGGGAGGTTCTGGCCGTGGCCGCCATG
ATGGACGTGGACGCCATCATGCGCGCCGCCGCCGCCGCCGCCGAAGCCTG
GCAGCTCCGCGCCGTCTCCTCC
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