mRNA_S-ischiensis_contig15.3651.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3651.1
Unique NamemRNA_S-ischiensis_contig15.3651.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig15.3651.1 vs. uniprot
Match: A0A6H5KRM2_9PHAE (NTP_transf_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRM2_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.210e-28
Identity = 56/77 (72.73%), Postives = 66/77 (85.71%), Query Frame = 1 
Query:   16 FQVDISIDGLAHTGMATTAFVSYLADHLSNLVPLTLVLKHLLQRKGLNDPYTGGLSSYGLVLMVTFLLLRQHQYPGS 246
            F +DISIDG +HTG+AT+AF SYLADHL NL PLT+VLK LLQ +GLNDP+TGGLSSYGLVLMVTF LL++  +P S
Sbjct:  186 FNIDISIDGQSHTGLATSAFTSYLADHLPNLCPLTMVLKQLLQSRGLNDPFTGGLSSYGLVLMVTFALLQRDHFPPS 262
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BLAST of mRNA_S-ischiensis_contig15.3651.1 vs. uniprot
Match: D8LH60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH60_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 9.670e-27
Identity = 55/77 (71.43%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:   16 FQVDISIDGLAHTGMATTAFVSYLADHLSNLVPLTLVLKHLLQRKGLNDPYTGGLSSYGLVLMVTFLLLRQHQYPGS 246
            F +DISID  +HTG+AT+AF SYLADHL NL PLT+VLK LLQ +GLNDP+TGGLSSYGLVLMVTF LL++  +P S
Sbjct:  456 FSIDISIDCQSHTGLATSAFTSYLADHLPNLCPLTMVLKQLLQSRGLNDPFTGGLSSYGLVLMVTFALLQRDHFPPS 532
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BLAST of mRNA_S-ischiensis_contig15.3651.1 vs. uniprot
Match: K3WFP7_GLOUD (NTP_transf_2 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFP7_GLOUD)

HSP 1 Score: 79.7 bits (195), Expect = 9.520e-15
Identity = 40/71 (56.34%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:   25 DISID---GLAHTGMATTAFVSYLADHLSNLVPLTLVLKHLLQRKGLNDPYTGGLSSYGLVLMVTFLLLRQ 228
            DI+ D   GL H G+A+ A +S L+DH   L  L  VLKH L ++GLNDPY GGLSSYGL+LM+ F+LL Q
Sbjct:  596 DITFDDPIGLFHNGIASAALISKLSDHFYGLRELAFVLKHFLAKRGLNDPYVGGLSSYGLLLMIIFILLEQ 666
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BLAST of mRNA_S-ischiensis_contig15.3651.1 vs. uniprot
Match: A0A7S0CXX3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CXX3_9EUKA)

HSP 1 Score: 78.6 bits (192), Expect = 1.980e-14
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:   19 QVDISIDGLAHTGMATTAFVSYLADHLSNLVPLTLVLKHLLQRKGLNDPYTGGLSSYGLVLMVTFLLLR 225
            Q+D+S D  +H G++T AFV  L      LVPLT+VLK  L  +GLNDPY+GGLSSYGLVLM+T +L R
Sbjct:  232 QLDLSFDSPSHRGLSTCAFVRGLCAEFPMLVPLTMVLKQFLVTRGLNDPYSGGLSSYGLVLMLTRVLQR 300
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BLAST of mRNA_S-ischiensis_contig15.3651.1 vs. uniprot
Match: A0A7R9UCX2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCX2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.100e-13
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:   19 QVDISIDGLAHTGMATTAFVSYLADHLSNLVPLTLVLKHLLQRKGLNDPYTGGLSSYGLVLMVTFLLLRQ 228
             +DISI  + HTG+A TAFV YL  HL  L PL LVLK  L +  L+D + GG+ +YGL+LMVT LLL +
Sbjct:  571 MLDISIHSIRHTGLANTAFVKYLMKHLPELQPLVLVLKFFLSKHRLHDVFHGGVPAYGLILMVTLLLLHE 640
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BLAST of mRNA_S-ischiensis_contig15.3651.1 vs. uniprot
Match: A0A2R5GVM8_9STRA (PolyA RNA polymerase cid14 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVM8_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.960e-13
Identity = 41/73 (56.16%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:    7 GWCFQVDISIDGLAHTGMATTAFVSYLADHLSNLVPLTLVLKHLLQRKGLNDPYTGGLSSYGLVLMVTFLLLR 225
            G    VDI+ D  +HTG+ T A V  L      L PLTLV+K  L  KGLNDP+ GGLSSYGLVLMVT +L R
Sbjct:  775 GSLINVDITFDSYSHTGLRTCALVRRLMASYPPLKPLTLVIKQFLVVKGLNDPFVGGLSSYGLVLMVTAILQR 847
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BLAST of mRNA_S-ischiensis_contig15.3651.1 vs. uniprot
Match: A0A7S2SK54_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SK54_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.330e-12
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:   19 QVDISIDGLAHTGMATTAFVSYLADHLSNLVPLTLVLKHLLQRKGLNDPYTGGLSSYGLVLMVTFLLLRQHQ 234
            +VD+S+   +HTG+ +TAFVS L   L  L PLTLVLK L+ +  L+DPY GG+SSY LVLMV++ L ++ +
Sbjct:  186 EVDLSMHSQSHTGITSTAFVSELVASLPPLRPLTLVLKELVAQHQLDDPYLGGISSYALVLMVSYFLFQRRR 257
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BLAST of mRNA_S-ischiensis_contig15.3651.1 vs. uniprot
Match: A0A662YKJ9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YKJ9_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.350e-12
Identity = 40/71 (56.34%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:   25 DISID---GLAHTGMATTAFVSYLADHLSNLVPLTLVLKHLLQRKGLNDPYTGGLSSYGLVLMVTFLLLRQ 228
            DI+ D   G+ H G+A+ + V  LAD    L  LTLVLKH L  +GLNDPY GGLSSYGL+LMV F+L  Q
Sbjct:  544 DITFDEPNGIRHNGVASVSLVRGLADAFYGLRELTLVLKHFLVERGLNDPYIGGLSSYGLLLMVVFVLQEQ 614
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BLAST of mRNA_S-ischiensis_contig15.3651.1 vs. uniprot
Match: A0A7S2SJ60_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJ60_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.370e-12
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:   19 QVDISIDGLAHTGMATTAFVSYLADHLSNLVPLTLVLKHLLQRKGLNDPYTGGLSSYGLVLMVTFLLLRQHQ 234
            +VD+S+   +HTG+ +TAFVS L   L  L PLTLVLK L+ +  L+DPY GG+SSY LVLMV++ L ++ +
Sbjct:  489 EVDLSMHSQSHTGITSTAFVSELVASLPPLRPLTLVLKELVAQHQLDDPYLGGISSYALVLMVSYFLFQRRR 560
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BLAST of mRNA_S-ischiensis_contig15.3651.1 vs. uniprot
Match: A0A3M6VUC9_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VUC9_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.820e-12
Identity = 40/72 (55.56%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:   22 VDISID---GLAHTGMATTAFVSYLADHLSNLVPLTLVLKHLLQRKGLNDPYTGGLSSYGLVLMVTFLLLRQ 228
            VDI+ D   G+ H G+A+   V  LA     L  LTLVLKH L  +GLNDPY GGLSSYGL+LMV F+L  Q
Sbjct:  472 VDITFDEPYGIHHNGVASATMVQCLASAFYGLRELTLVLKHFLVERGLNDPYVGGLSSYGLLLMVVFVLQEQ 543
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRM2_9PHAE1.210e-2872.73NTP_transf_2 domain-containing protein n=1 Tax=Ect... [more]
D8LH60_ECTSI9.670e-2771.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K3WFP7_GLOUD9.520e-1556.34NTP_transf_2 domain-containing protein n=1 Tax=Glo... [more]
A0A7S0CXX3_9EUKA1.980e-1457.97Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7R9UCX2_9STRA1.100e-1354.29Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A2R5GVM8_9STRA3.960e-1356.16PolyA RNA polymerase cid14 n=1 Tax=Hondaea ferment... [more]
A0A7S2SK54_9STRA1.330e-1251.39Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A662YKJ9_9STRA1.350e-1256.34Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A7S2SJ60_9STRA1.370e-1251.39Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A3M6VUC9_9STRA1.820e-1255.56Uncharacterized protein n=2 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:1242238..1243483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue3.1e-23
Seed eggNOG ortholog2880.D8LH60
KEGG koko:K03514
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
EC2.7.7.19
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size401
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815755.8934348-CDS-S-ischiensis_contig15:1242239..12424941622815755.8934348-CDS-S-ischiensis_contig15:1242239..1242494Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 1242240..1242494 -
1695739896.035962-CDS-S-ischiensis_contig15:1242239..12424941695739896.035962-CDS-S-ischiensis_contig15:1242239..1242494Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 1242240..1242494 -
1622815755.9046195-CDS-S-ischiensis_contig15:1243339..12434831622815755.9046195-CDS-S-ischiensis_contig15:1243339..1243483Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 1243340..1243483 -
1695739896.056987-CDS-S-ischiensis_contig15:1243339..12434831695739896.056987-CDS-S-ischiensis_contig15:1243339..1243483Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 1243340..1243483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3651.1prot_S-ischiensis_contig15.3651.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 1242240..1243483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3651.1

>prot_S-ischiensis_contig15.3651.1 ID=prot_S-ischiensis_contig15.3651.1|Name=mRNA_S-ischiensis_contig15.3651.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=133bp
GGGWCFQVDISIDGLAHTGMATTAFVSYLADHLSNLVPLTLVLKHLLQRK
GLNDPYTGGLSSYGLVLMVTFLLLRQHQYPGSGGGSAATPGARDGGGGGG
SPAMHDRNPPPGKGPPSPTEAGGQAAAAAMAAS
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mRNA from alignment at S-ischiensis_contig15:1242238..1243483-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3651.1 ID=mRNA_S-ischiensis_contig15.3651.1|Name=mRNA_S-ischiensis_contig15.3651.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1246bp|location=Sequence derived from alignment at S-ischiensis_contig15:1242238..1243483- (Schizocladia ischiensis KU_0333)
GGAGGAGGCTGGTGCTTTCAGGTGGACATTAGCATCGATGGCCTGGCGCA
CACAGGCATGGCGACCACGGCCTTTGTGTCCTACCTGGCGGACCACCTGA
GCAACCTTGTGCCGCTCACCCTCGTGCTCAAGCACCTTCTGCAGGTGAGG
TGCTTCGAATTACTACCGTAGTAGTTGCCGTAGGGTACTGTGCGGAGAGA
TGTCGCCTGTCCCGGCCCGCGTATGTGCGAGTAACAGGTCCGACCGAGGC
TTTAACCCTTTTACCCCTGCTTAATGGGACTTAACACACTAGAACCCTAT
GAGTATACAGATCCCAGGGATACAAGGGGTAAGGCAGGTTGATATCGAAA
CAGCCTTCTACAGAGTGTCCGCAGGGCGCTTTTTGCACTTGCCCCGAGAA
AGGTGGACGTAGCCGGGCCTGGGCCCCTTGAGGTGAGTTTGCCCCCCCCC
ACCCCCCGAGCGGTTTCAGGCGAGTGTGTCGGACAGGCGCTCGTGTGAAT
CGGCTCCAACATTCAAGATTGTGCATGCATGTGCTTGGAAGTACCGCAGT
ACTCGAGTACACTACTTGCGCGTAATTTGCCCACTCTGTACCCGACTCTC
AGATACTGGTGGTGTAATTGTCTCCAGTATATAGAGCTCTATGTGCTCGC
GCTGTGCTTGCCATAGTCCCGAGAGTGAACCACCAAACCCTGATCTGCGA
GTGTACATGCGCCGACGTAGGTAGGTACCTAGTCCTCCAGGCCGAGGGCA
CAGGCAGACAGGCACATTTCCCCTTGGCTTCCCCCGGCCCAGCCAACCCG
CTTGGTGCGGGGCCCATGGGCGCTCCGCGGCCCAAACTCGGACGAAGCCT
ACTGTACATAGGTTCTCGCACTATCCTATATACCTACTTCCAAGTGTACT
CTATTTCACGTGGTGCCCCTTGCCCCCCCCCTGCGTTCCGGCCGCCGGCC
CCGCGTGCGCTCTCTCTCTCCCACGCCTCCCGTCCCCAGCGCAAGGGGCT
CAACGACCCCTACACAGGGGGGCTGTCCAGCTACGGCCTCGTCCTCATGG
TCACCTTCCTCCTCCTCAGGCAGCACCAGTATCCCGGCAGCGGCGGGGGC
AGCGCTGCCACCCCCGGTGCCAGGGACGGCGGCGGCGGCGGCGGGTCCCC
CGCCATGCACGATCGCAACCCTCCCCCCGGAAAGGGCCCCCCTTCACCCA
CTGAGGCGGGAGGCCAGGCGGCGGCGGCGGCGATGGCGGCCTCACC
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Coding sequence (CDS) from alignment at S-ischiensis_contig15:1242238..1243483-

>mRNA_S-ischiensis_contig15.3651.1 ID=mRNA_S-ischiensis_contig15.3651.1|Name=mRNA_S-ischiensis_contig15.3651.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=798bp|location=Sequence derived from alignment at S-ischiensis_contig15:1242238..1243483- (Schizocladia ischiensis KU_0333)
GGAGGAGGCTGGTGCTTTCAGGTGGACATTAGCATCGATGGCCTGGCGCA
CACAGGCATGGCGACCACGGCCTTTGTGTCCTACCTGGCGGACCACCTGA
GCAACCTTGTGCCGCTCACCCTCGTGCTCAAGCACCTTCTGCAGGGAGGA
GGCTGGTGCTTTCAGGTGGACATTAGCATCGATGGCCTGGCGCACACAGG
CATGGCGACCACGGCCTTTGTGTCCTACCTGGCGGACCACCTGAGCAACC
TTGTGCCGCTCACCCTCGTGCTCAAGCACCTTCTGCAGCGCAAGGGGCTC
AACGACCCCTACACAGGGGGGCTGTCCAGCTACGGCCTCGTCCTCATGGT
CACCTTCCTCCTCCTCAGGCAGCACCAGTATCCCGGCAGCGGCGGGGGCA
GCGCTGCCACCCCCGGTGCCAGGGACGGCGGCGGCGGCGGCGGGTCCCCC
GCCATGCACGATCGCAACCCTCCCCCCGGAAAGGGCCCCCCTTCACCCAC
TGAGGCGGGAGGCCAGGCGGCGGCGGCGGCGATGGCGGCCTCACGCAAGG
GGCTCAACGACCCCTACACAGGGGGGCTGTCCAGCTACGGCCTCGTCCTC
ATGGTCACCTTCCTCCTCCTCAGGCAGCACCAGTATCCCGGCAGCGGCGG
GGGCAGCGCTGCCACCCCCGGTGCCAGGGACGGCGGCGGCGGCGGCGGGT
CCCCCGCCATGCACGATCGCAACCCTCCCCCCGGAAAGGGCCCCCCTTCA
CCCACTGAGGCGGGAGGCCAGGCGGCGGCGGCGGCGATGGCGGCCTCA
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