mRNA_S-ischiensis_contig15.3598.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3598.1
Unique NamemRNA_S-ischiensis_contig15.3598.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig15.3598.1 vs. uniprot
Match: D8LG80_ECTSI (40S ribosomal protein S30 n=2 Tax=PX clade TaxID=569578 RepID=D8LG80_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 8.140e-33
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:    1 MGKVHGSLARAGKVKGQTPKVDQKEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 195
            MGKVHGSLARAGKVKGQTPK+D+ EKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV
Sbjct:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 65
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BLAST of mRNA_S-ischiensis_contig15.3598.1 vs. uniprot
Match: K0R2S3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R2S3_THAOC)

HSP 1 Score: 110 bits (275), Expect = 9.450e-29
Identity = 56/65 (86.15%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    1 MGKVHGSLARAGKVKGQTPKVDQKEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 195
            MGKVHGSLARAGKVKGQTPKV+ +EKKKQPRGRAKKRMQYNRR+VNVVTG+GGK++GPNSNA K+
Sbjct:   58 MGKVHGSLARAGKVKGQTPKVEAQEKKKQPRGRAKKRMQYNRRYVNVVTGMGGKKVGPNSNADKM 122
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BLAST of mRNA_S-ischiensis_contig15.3598.1 vs. uniprot
Match: A0A7S2V4V4_9STRA (Hypothetical protein n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2V4V4_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.010e-27
Identity = 56/64 (87.50%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:    4 GKVHGSLARAGKVKGQTPKVDQKEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 195
            GKVHGSLARAGKVKGQTPKV+ +EKKK+  GRAKKRMQYNRRFVNVVTGVGGK+LGPNSNA+KV
Sbjct:   77 GKVHGSLARAGKVKGQTPKVEAQEKKKKLTGRAKKRMQYNRRFVNVVTGVGGKKLGPNSNASKV 140
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BLAST of mRNA_S-ischiensis_contig15.3598.1 vs. uniprot
Match: A0A1E7F7Q1_9STRA (40S ribosomal protein S30 n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A1E7F7Q1_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.470e-26
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 MGKVHGSLARAGKVKGQTPKVD-QKEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 195
            MGKVHGSLARAGKVK QTPKV+ Q+E KKQPRGRAKKR+QYNRR+VNVVTG+GGKR+GPNSNA K+
Sbjct:    1 MGKVHGSLARAGKVKNQTPKVEKQEEGKKQPRGRAKKRLQYNRRYVNVVTGMGGKRVGPNSNADKM 66
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BLAST of mRNA_S-ischiensis_contig15.3598.1 vs. uniprot
Match: A0A4D9D2L7_9STRA (Ubiquitin-like domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2L7_9STRA)

HSP 1 Score: 101 bits (252), Expect = 4.890e-25
Identity = 52/64 (81.25%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    4 GKVHGSLARAGKVKGQTPKVDQKEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 195
            GKVHGSLARAGKVKGQTPKV+++EK+K PRGRAKKR+ Y+RRF+NV TGVGGKRLGPNSNA K+
Sbjct:   77 GKVHGSLARAGKVKGQTPKVEKQEKRKTPRGRAKKRVLYSRRFLNVATGVGGKRLGPNSNADKM 140
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BLAST of mRNA_S-ischiensis_contig15.3598.1 vs. uniprot
Match: A0A8J2X0V5_9STRA (Hypothetical protein n=3 Tax=Pelagomonadales TaxID=54409 RepID=A0A8J2X0V5_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.250e-24
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    4 GKVHGSLARAGKVKGQTPKVDQKEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNA 186
            GKVHGSLARAGKVKGQTPKV+++EKKK P GRAKKRM YNRRFVNVV GVGGKR GPNSNA
Sbjct:   91 GKVHGSLARAGKVKGQTPKVEKQEKKKLPTGRAKKRMLYNRRFVNVVAGVGGKRFGPNSNA 151
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BLAST of mRNA_S-ischiensis_contig15.3598.1 vs. uniprot
Match: A0A2P6VFJ9_9CHLO (40S ribosomal protein S30 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VFJ9_9CHLO)

HSP 1 Score: 95.5 bits (236), Expect = 1.370e-23
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 MGKVHGSLARAGKVKGQTPKVDQKEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNS 180
            MGKVHGSLARAGKV+GQTPKV ++EKKK P+GRA+KR+QYNRRFVNVV G GGK+ GPNS
Sbjct:    1 MGKVHGSLARAGKVRGQTPKVPKQEKKKTPKGRARKRLQYNRRFVNVVVGFGGKKKGPNS 60
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BLAST of mRNA_S-ischiensis_contig15.3598.1 vs. uniprot
Match: A0A484DSZ2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DSZ2_BRELC)

HSP 1 Score: 94.0 bits (232), Expect = 1.060e-22
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    4 GKVHGSLARAGKVKGQTPKVD-QKEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 195
            GKVHGSLARAGKVKGQTPKV  Q++ KK   GRAKKR QYNRRFVNVV G GGK+LGPNSNAAKV
Sbjct:   21 GKVHGSLARAGKVKGQTPKVPKQEDSKKALTGRAKKRWQYNRRFVNVVAGSGGKKLGPNSNAAKV 85
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BLAST of mRNA_S-ischiensis_contig15.3598.1 vs. uniprot
Match: A0A7S3LSY6_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LSY6_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.080e-22
Identity = 50/64 (78.12%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    4 GKVHGSLARAGKVKGQTPKVDQKEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 195
            GKVHGSLARAGKVKGQTPKV +++KK+ P GRAKKRMQYNRRFVNVV G  GKR+GPN+NAA++
Sbjct:   77 GKVHGSLARAGKVKGQTPKVAKQDKKRVPTGRAKKRMQYNRRFVNVVNGGMGKRVGPNNNAARL 140
[Close]
BLAST of mRNA_S-ischiensis_contig15.3598.1 vs. uniprot
Match: G4YM34_PHYSP (Uncharacterized protein n=14 Tax=Peronosporaceae TaxID=4777 RepID=G4YM34_PHYSP)

HSP 1 Score: 93.6 bits (231), Expect = 1.550e-22
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    4 GKVHGSLARAGKVKGQTPKVD-QKEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAK 192
            GKVHGSLARAGKVKGQTPKV  Q++ KK   GRAKKR QYNRRFVNVV G+GGK+LGPNSNAAK
Sbjct:   22 GKVHGSLARAGKVKGQTPKVPKQEDSKKALTGRAKKRWQYNRRFVNVVAGMGGKKLGPNSNAAK 85
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG80_ECTSI8.140e-3395.3840S ribosomal protein S30 n=2 Tax=PX clade TaxID=5... [more]
K0R2S3_THAOC9.450e-2986.15Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2V4V4_9STRA5.010e-2787.50Hypothetical protein n=3 Tax=Ochrophyta TaxID=2696... [more]
A0A1E7F7Q1_9STRA1.470e-2683.3340S ribosomal protein S30 n=4 Tax=Bacillariophyta ... [more]
A0A4D9D2L7_9STRA4.890e-2581.25Ubiquitin-like domain-containing protein n=2 Tax=M... [more]
A0A8J2X0V5_9STRA2.250e-2486.89Hypothetical protein n=3 Tax=Pelagomonadales TaxID... [more]
A0A2P6VFJ9_9CHLO1.370e-2380.0040S ribosomal protein S30 n=1 Tax=Micractinium con... [more]
A0A484DSZ2_BRELC1.060e-2281.54Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A7S3LSY6_9STRA1.080e-2278.13Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
G4YM34_PHYSP1.550e-2281.25Uncharacterized protein n=14 Tax=Peronosporaceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:913903..914545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue5.7e-26
Seed eggNOG ortholog2880.D8LG80
Preferred nameRPS30
KEGG koko:K02983
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsKOG0009@1,KOG0009@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein S30
Ec32 orthologEc-17_004070.1
Exons2
Model size390
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3598.1prot_S-ischiensis_contig15.3598.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 913903..914353 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815752.450376-CDS-S-ischiensis_contig15:913902..9140001622815752.450376-CDS-S-ischiensis_contig15:913902..914000Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 913903..914000 +
1695739893.830082-CDS-S-ischiensis_contig15:913902..9140001695739893.830082-CDS-S-ischiensis_contig15:913902..914000Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 913903..914000 +
1622815752.4629388-CDS-S-ischiensis_contig15:914253..9143531622815752.4629388-CDS-S-ischiensis_contig15:914253..914353Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 914254..914353 +
1695739893.8433545-CDS-S-ischiensis_contig15:914253..9143531695739893.8433545-CDS-S-ischiensis_contig15:914253..914353Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 914254..914353 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815752.4821022-UTR-S-ischiensis_contig15:914353..9145451622815752.4821022-UTR-S-ischiensis_contig15:914353..914545Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 914354..914545 +
1695739893.8535109-UTR-S-ischiensis_contig15:914353..9145451695739893.8535109-UTR-S-ischiensis_contig15:914353..914545Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 914354..914545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3598.1

>prot_S-ischiensis_contig15.3598.1 ID=prot_S-ischiensis_contig15.3598.1|Name=mRNA_S-ischiensis_contig15.3598.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=66bp
MGKVHGSLARAGKVKGQTPKVDQKEKKKQPRGRAKKRMQYNRRFVNVVTG
VGGKRLGPNSNAAKV*
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mRNA from alignment at S-ischiensis_contig15:913903..914545+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3598.1 ID=mRNA_S-ischiensis_contig15.3598.1|Name=mRNA_S-ischiensis_contig15.3598.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=643bp|location=Sequence derived from alignment at S-ischiensis_contig15:913903..914545+ (Schizocladia ischiensis KU_0333)
ATGGGCAAGGTTCACGGGTCGCTCGCGCGTGCGGGTAAGGTCAAGGGTCA
GACACCCAAGGTCGACCAGAAGGAGAAGAAGAAGCAGCCGCGCGGCAGGT
AAGGGGCGTCACGCCGACTAGTGCGACGGCCCGACCACCGGCCTCTTTGT
CTTCGCTCGCCCGAGCCAACTTTTATTTTTTGCGCGACAAACCGCTACCG
CCTTGCGGCGCAGGGGAACGACCACTTCCTACCTCGTTTTCTTAACGGCG
TGTACCTTGCTGGTTGACCTTTGCGCCTTTCCTCAACCACGGTCATACCC
TACCCTTTTTGTCCGCCTGGCGTTGGTTTTACGCCCTGTAATATTTGGCA
GGGCAAAGAAGCGCATGCAGTACAACCGGCGGTTCGTCAACGTGGTGACG
GGAGTGGGAGGGAAGCGCCTGGGCCCCAACTCCAACGCCGCCAAGGTTTA
AAATATCGCTGCGTCTGGCTGGGAGGAGTCCCGGGCACGGCACACCTATG
CCGGTTGGCCTGGCACGCCTTGAGCCGCTCTTTGGCGCCATGGAGCTTTG
GAGAGGGCTGGCATCAGGCGAAGACGGCAGCTGCGAAGCCAGTATGGCGG
CCCTCTAGCGGCTTCGGGCCCCACCGCTTTGCGGCTTGGCAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig15:913903..914545+

>mRNA_S-ischiensis_contig15.3598.1 ID=mRNA_S-ischiensis_contig15.3598.1|Name=mRNA_S-ischiensis_contig15.3598.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=396bp|location=Sequence derived from alignment at S-ischiensis_contig15:913903..914545+ (Schizocladia ischiensis KU_0333)
ATGGGCAAGGTTCACGGGTCGCTCGCGCGTGCGGGTAAGGTCAAGGGTCA
GACACCCAAGGTCGACCAGAAGGAGAAGAAGAAGCAGCCGCGCGGCAGAT
GGGCAAGGTTCACGGGTCGCTCGCGCGTGCGGGTAAGGTCAAGGGTCAGA
CACCCAAGGTCGACCAGAAGGAGAAGAAGAAGCAGCCGCGCGGCAGGGCA
AAGAAGCGCATGCAGTACAACCGGCGGTTCGTCAACGTGGTGACGGGAGT
GGGAGGGAAGCGCCTGGGCCCCAACTCCAACGCCGCCAAGGTTTAAGGCA
AAGAAGCGCATGCAGTACAACCGGCGGTTCGTCAACGTGGTGACGGGAGT
GGGAGGGAAGCGCCTGGGCCCCAACTCCAACGCCGCCAAGGTTTAA
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