mRNA_S-ischiensis_contig15.3594.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3594.1
Unique NamemRNA_S-ischiensis_contig15.3594.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:907245..907676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815741.364-CDS-S-ischiensis_contig15:907244..9076761622815741.364-CDS-S-ischiensis_contig15:907244..907676Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 907245..907676 +
1695739887.0320451-CDS-S-ischiensis_contig15:907244..9076761695739887.0320451-CDS-S-ischiensis_contig15:907244..907676Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 907245..907676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3594.1prot_S-ischiensis_contig15.3594.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 907245..907676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3594.1

>prot_S-ischiensis_contig15.3594.1 ID=prot_S-ischiensis_contig15.3594.1|Name=mRNA_S-ischiensis_contig15.3594.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=144bp
PSVTPPPAPPPAKPLPPGPLLSGRSTATLCSGRAWVLTAPGNAGGAPREP
PALAPMRLWPLWLLRFALAAASVCWPARRAPSWLGRWPRAALRSPGGAGF
GAQRNTHLICPNHHNASPGEMSWASPALTACCSHRGETPTGIDE
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mRNA from alignment at S-ischiensis_contig15:907245..907676+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3594.1 ID=mRNA_S-ischiensis_contig15.3594.1|Name=mRNA_S-ischiensis_contig15.3594.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=432bp|location=Sequence derived from alignment at S-ischiensis_contig15:907245..907676+ (Schizocladia ischiensis KU_0333)
CCCTCCGTCACGCCGCCGCCGGCGCCGCCGCCTGCCAAGCCTCTGCCACC
GGGCCCGCTGCTCTCGGGCCGGTCGACCGCCACCCTCTGCTCGGGTCGTG
CCTGGGTGCTCACGGCCCCCGGCAATGCGGGCGGGGCTCCCCGTGAGCCC
CCCGCACTTGCTCCCATGAGGTTGTGGCCACTGTGGCTACTACGATTTGC
CCTCGCCGCCGCCTCTGTGTGCTGGCCTGCTCGACGCGCCCCTTCTTGGC
TCGGTCGATGGCCACGTGCTGCCCTCAGGTCGCCCGGTGGTGCCGGGTTT
GGTGCCCAGAGAAACACCCACTTGATTTGCCCGAACCACCACAACGCGTC
CCCCGGGGAGATGTCGTGGGCCTCGCCGGCCCTGACGGCGTGTTGCAGCC
ACAGGGGAGAGACACCCACGGGTATAGATGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig15:907245..907676+

>mRNA_S-ischiensis_contig15.3594.1 ID=mRNA_S-ischiensis_contig15.3594.1|Name=mRNA_S-ischiensis_contig15.3594.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=864bp|location=Sequence derived from alignment at S-ischiensis_contig15:907245..907676+ (Schizocladia ischiensis KU_0333)
CCCTCCGTCACGCCGCCGCCGGCGCCGCCGCCTGCCAAGCCTCTGCCACC
GGGCCCGCTGCTCTCGGGCCGGTCGACCGCCACCCTCTGCTCGGGTCGTG
CCTGGGTGCTCACGGCCCCCGGCAATGCGGGCGGGGCTCCCCGTGAGCCC
CCCGCACTTGCTCCCATGAGGTTGTGGCCACTGTGGCTACTACGATTTGC
CCTCGCCGCCGCCTCTGTGTGCTGGCCTGCTCGACGCGCCCCTTCTTGGC
TCGGTCGATGGCCACGTGCTGCCCTCAGGTCGCCCGGTGGTGCCGGGTTT
GGTGCCCAGAGAAACACCCACTTGATTTGCCCGAACCACCACAACGCGTC
CCCCGGGGAGATGTCGTGGGCCTCGCCGGCCCTGACGGCGTGTTGCAGCC
ACAGGGGAGAGACACCCACGGGTATAGATGAGCCCTCCGTCACGCCGCCG
CCGGCGCCGCCGCCTGCCAAGCCTCTGCCACCGGGCCCGCTGCTCTCGGG
CCGGTCGACCGCCACCCTCTGCTCGGGTCGTGCCTGGGTGCTCACGGCCC
CCGGCAATGCGGGCGGGGCTCCCCGTGAGCCCCCCGCACTTGCTCCCATG
AGGTTGTGGCCACTGTGGCTACTACGATTTGCCCTCGCCGCCGCCTCTGT
GTGCTGGCCTGCTCGACGCGCCCCTTCTTGGCTCGGTCGATGGCCACGTG
CTGCCCTCAGGTCGCCCGGTGGTGCCGGGTTTGGTGCCCAGAGAAACACC
CACTTGATTTGCCCGAACCACCACAACGCGTCCCCCGGGGAGATGTCGTG
GGCCTCGCCGGCCCTGACGGCGTGTTGCAGCCACAGGGGAGAGACACCCA
CGGGTATAGATGAG
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