mRNA_S-ischiensis_contig15.3559.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3559.1
Unique NamemRNA_S-ischiensis_contig15.3559.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig15.3559.1 vs. uniprot
Match: A0A830H9N0_9CHLO (CRC domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H9N0_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 2.450e-7
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 SFCLKKYCECFVGGVVCADKCRCLSCANFKGSLALVAVL 117
            SFCLKKYCECF GG++C+D C+C  C N++GS  L  +L
Sbjct:  379 SFCLKKYCECFQGGILCSDICKCTECKNYQGSKELAKIL 417
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BLAST of mRNA_S-ischiensis_contig15.3559.1 vs. uniprot
Match: A0A7S3QG23_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QG23_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.450e-7
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 SFCLKKYCECFVGGVVCADKCRCLSCANFKGSLALVA 111
            S CLKKYCECF GG++C  KC+C++C NF GS  L+A
Sbjct:  728 SACLKKYCECFEGGIMCGSKCKCVNCQNFTGSAQLIA 764
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BLAST of mRNA_S-ischiensis_contig15.3559.1 vs. uniprot
Match: A0A2V0PCH6_9CHLO (CRC domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PCH6_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 1.240e-5
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 SFCLKKYCECFVGGVVCADKCRCLSCANFKGSLALVAVL 117
            S CLKKYCECF GG+ C++ CRCL C N++GS A   V+
Sbjct:  100 SGCLKKYCECFQGGIFCSEICRCLDCKNYEGSDARDTVM 138
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BLAST of mRNA_S-ischiensis_contig15.3559.1 vs. uniprot
Match: A0A7S2SM18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SM18_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.770e-5
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    1 SFCLKKYCECFVGGVVCADKCRCLSCANFKGSLAL 105
            S CLKKYCECF   V C +KC+CL C N+ GS+AL
Sbjct:  104 SKCLKKYCECFEALVFCGEKCKCLDCENYAGSIAL 138
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BLAST of mRNA_S-ischiensis_contig15.3559.1 vs. uniprot
Match: A0A383V517_TETOB (CRC domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383V517_TETOB)

HSP 1 Score: 53.1 bits (126), Expect = 3.320e-5
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    1 SFCLKKYCECFVGGVVCADKCRCLSCANFKGSLALVAVL 117
            S CLKKYCECF GG+ C + C+C+ C N+ GS A   VL
Sbjct:  188 SSCLKKYCECFQGGIFCTEICKCVDCKNYDGSEARAQVL 226
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A830H9N0_9CHLO2.450e-758.97CRC domain-containing protein n=1 Tax=Pycnococcus ... [more]
A0A7S3QG23_9STRA3.450e-762.16Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A2V0PCH6_9CHLO1.240e-558.97CRC domain-containing protein n=1 Tax=Raphidocelis... [more]
A0A7S2SM18_9STRA1.770e-562.86Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A383V517_TETOB3.320e-556.41CRC domain-containing protein n=1 Tax=Tetradesmus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:673615..674083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionCRC domain
Ec32 orthologEc-06_002100.1
Hectar predicted targeting categoryother localisation
Exons1
Model size471
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815749.4105697-CDS-S-ischiensis_contig15:673614..6740821622815749.4105697-CDS-S-ischiensis_contig15:673614..674082Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 673615..674082 +
1695739891.6800776-CDS-S-ischiensis_contig15:673614..6740821695739891.6800776-CDS-S-ischiensis_contig15:673614..674082Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 673615..674082 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3559.1prot_S-ischiensis_contig15.3559.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 673615..674082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3559.1

>prot_S-ischiensis_contig15.3559.1 ID=prot_S-ischiensis_contig15.3559.1|Name=mRNA_S-ischiensis_contig15.3559.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=156bp
SFCLKKYCECFVGGVVCADKCRCLSCANFKGSLALVAVLEHPSTGNLVKR
RRRPPCDPNAFRRRAKLPTPPGSARMADTGPFAPMADTGSFPPIAPTEDT
GSLAPAHASAMACLGNLPHAQPSAMPATEPCPGTAVLGAAPPPLDLLMPP
PRSLQH
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mRNA from alignment at S-ischiensis_contig15:673615..674083+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3559.1 ID=mRNA_S-ischiensis_contig15.3559.1|Name=mRNA_S-ischiensis_contig15.3559.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=469bp|location=Sequence derived from alignment at S-ischiensis_contig15:673615..674083+ (Schizocladia ischiensis KU_0333)
AGCTTCTGCCTCAAGAAGTACTGCGAGTGCTTTGTGGGCGGAGTGGTTTG
CGCGGACAAGTGCAGGTGCTTGTCGTGCGCCAACTTCAAGGGGAGCTTGG
CGCTCGTGGCCGTCTTGGAGCATCCCTCGACGGGCAACCTCGTCAAGCGG
CGGCGGAGGCCGCCTTGCGACCCCAACGCCTTTAGGCGGCGGGCAAAACT
GCCTACCCCCCCGGGCAGTGCGCGCATGGCAGACACAGGGCCGTTTGCGC
CCATGGCAGACACAGGGTCGTTTCCGCCCATTGCGCCCACGGAAGACACA
GGGTCATTGGCGCCCGCCCACGCCTCTGCGATGGCTTGCCTGGGCAACCT
CCCACATGCACAGCCTTCGGCGATGCCTGCGACAGAACCATGCCCCGGAA
CGGCAGTGCTTGGAGCAGCGCCGCCTCCGCTGGACCTGTTGATGCCACCC
CCACGTTCGCTGCAGCACG
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Coding sequence (CDS) from alignment at S-ischiensis_contig15:673615..674083+

>mRNA_S-ischiensis_contig15.3559.1 ID=mRNA_S-ischiensis_contig15.3559.1|Name=mRNA_S-ischiensis_contig15.3559.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=936bp|location=Sequence derived from alignment at S-ischiensis_contig15:673615..674083+ (Schizocladia ischiensis KU_0333)
AGCTTCTGCCTCAAGAAGTACTGCGAGTGCTTTGTGGGCGGAGTGGTTTG
CGCGGACAAGTGCAGGTGCTTGTCGTGCGCCAACTTCAAGGGGAGCTTGG
CGCTCGTGGCCGTCTTGGAGCATCCCTCGACGGGCAACCTCGTCAAGCGG
CGGCGGAGGCCGCCTTGCGACCCCAACGCCTTTAGGCGGCGGGCAAAACT
GCCTACCCCCCCGGGCAGTGCGCGCATGGCAGACACAGGGCCGTTTGCGC
CCATGGCAGACACAGGGTCGTTTCCGCCCATTGCGCCCACGGAAGACACA
GGGTCATTGGCGCCCGCCCACGCCTCTGCGATGGCTTGCCTGGGCAACCT
CCCACATGCACAGCCTTCGGCGATGCCTGCGACAGAACCATGCCCCGGAA
CGGCAGTGCTTGGAGCAGCGCCGCCTCCGCTGGACCTGTTGATGCCACCC
CCACGTTCGCTGCAGCACAGCTTCTGCCTCAAGAAGTACTGCGAGTGCTT
TGTGGGCGGAGTGGTTTGCGCGGACAAGTGCAGGTGCTTGTCGTGCGCCA
ACTTCAAGGGGAGCTTGGCGCTCGTGGCCGTCTTGGAGCATCCCTCGACG
GGCAACCTCGTCAAGCGGCGGCGGAGGCCGCCTTGCGACCCCAACGCCTT
TAGGCGGCGGGCAAAACTGCCTACCCCCCCGGGCAGTGCGCGCATGGCAG
ACACAGGGCCGTTTGCGCCCATGGCAGACACAGGGTCGTTTCCGCCCATT
GCGCCCACGGAAGACACAGGGTCATTGGCGCCCGCCCACGCCTCTGCGAT
GGCTTGCCTGGGCAACCTCCCACATGCACAGCCTTCGGCGATGCCTGCGA
CAGAACCATGCCCCGGAACGGCAGTGCTTGGAGCAGCGCCGCCTCCGCTG
GACCTGTTGATGCCACCCCCACGTTCGCTGCAGCAC
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