mRNA_S-ischiensis_contig15.3525.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3525.1
Unique NamemRNA_S-ischiensis_contig15.3525.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:450936..452045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1111
Cds size726
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.8014467-CDS-S-ischiensis_contig15:450935..4516611622815740.8014467-CDS-S-ischiensis_contig15:450935..451661Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 450936..451661 +
1695739886.8286474-CDS-S-ischiensis_contig15:450935..4516611695739886.8286474-CDS-S-ischiensis_contig15:450935..451661Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 450936..451661 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.8137147-UTR-S-ischiensis_contig15:451661..4520451622815740.8137147-UTR-S-ischiensis_contig15:451661..452045Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 451662..452045 +
1695739886.8388798-UTR-S-ischiensis_contig15:451661..4520451695739886.8388798-UTR-S-ischiensis_contig15:451661..452045Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 451662..452045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3525.1prot_S-ischiensis_contig15.3525.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 450936..451661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3525.1

>prot_S-ischiensis_contig15.3525.1 ID=prot_S-ischiensis_contig15.3525.1|Name=mRNA_S-ischiensis_contig15.3525.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=242bp
ASAATPQASLRLADGKGPGPGPPSPPATTSESAGGLSLPLQARSQAGTLA
SAGFKLPPAYDPKTRTGTPGVSPATVPVPQGLSSRSTQAAAAAAAVAGAH
SVGGGDDDPPRDFGARHRSGQGVAASGRPGGPGRAALDGNANGGRGVGDG
GGSGSGPGAAPRHKGAARATATATGLPVPQPDHPARGSGAAASAVVFRAG
FRMPKKAAGSGAAAQRTIARAAAAAAVGAAASTSAETVNPR*
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mRNA from alignment at S-ischiensis_contig15:450936..452045+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3525.1 ID=mRNA_S-ischiensis_contig15.3525.1|Name=mRNA_S-ischiensis_contig15.3525.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1110bp|location=Sequence derived from alignment at S-ischiensis_contig15:450936..452045+ (Schizocladia ischiensis KU_0333)
GCCAGTGCTGCTACACCTCAGGCTAGCCTGAGGCTCGCCGACGGCAAGGG
CCCGGGCCCCGGGCCGCCCTCCCCACCAGCCACCACCTCTGAGTCAGCGG
GTGGTCTGAGCCTGCCATTGCAGGCCCGCTCTCAGGCTGGCACACTGGCC
TCAGCAGGTTTCAAGCTGCCCCCGGCTTACGATCCCAAGACTCGCACCGG
CACACCGGGCGTGTCTCCAGCCACTGTGCCGGTGCCCCAGGGGCTGTCGT
CACGCTCTACTCAGGCCGCTGCCGCCGCGGCGGCGGTGGCTGGGGCTCAC
AGCGTGGGTGGCGGGGATGATGATCCCCCCCGGGACTTTGGCGCCCGCCA
TCGTTCTGGGCAGGGAGTTGCCGCCTCGGGAAGGCCCGGGGGTCCAGGAA
GAGCTGCCCTGGATGGCAACGCGAACGGCGGCCGTGGCGTTGGGGACGGC
GGCGGCAGCGGCAGCGGCCCAGGAGCTGCCCCGAGGCATAAGGGGGCTGC
GAGAGCAACCGCTACGGCGACTGGGCTGCCAGTGCCCCAGCCAGATCATC
CTGCCAGGGGGTCTGGTGCTGCTGCCAGTGCAGTCGTTTTCCGGGCGGGT
TTCCGCATGCCCAAGAAGGCCGCCGGGTCGGGGGCCGCCGCGCAGCGCAC
CATCGCGCGGGCGGCGGCAGCGGCGGCTGTCGGGGCCGCGGCATCCACGA
GTGCTGAGACAGTCAATCCCAGATAGTGCTGCGACTGTAGCAGAATCATG
GGGCATTCAAAGCTGGGTCGTATCCCAGATAGCTACTGTAGCAGAATCAT
GGGGGCAATCTGTAGCAGAATCATGGGGGCAATCCCAGATAGTTAAAATG
AGTGCCGAGGCAGACAAGCCCAGATAGTTAACAGTGGCGTAATCGTGGGG
GCATTCAAGGGCAACCTGACCCTTGAGACATGAAAAAGTGTCACTGGCAC
GCCTTGCGCCACTTGACAATGTCAAGTTGATTTTTGTTGCGGCCCCACCG
GCACCTGGCATGAATGCCGCGGGGGTACTCCTGAGTACCATTATAAGGCC
GGCTGATGCCGCCAATTTTTGAGGAATTGGAGCTACAGTAGCTGTATTGG
AATACTCGTA
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Coding sequence (CDS) from alignment at S-ischiensis_contig15:450936..452045+

>mRNA_S-ischiensis_contig15.3525.1 ID=mRNA_S-ischiensis_contig15.3525.1|Name=mRNA_S-ischiensis_contig15.3525.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1452bp|location=Sequence derived from alignment at S-ischiensis_contig15:450936..452045+ (Schizocladia ischiensis KU_0333)
GCCAGTGCTGCTACACCTCAGGCTAGCCTGAGGCTCGCCGACGGCAAGGG
CCCGGGCCCCGGGCCGCCCTCCCCACCAGCCACCACCTCTGAGTCAGCGG
GTGGTCTGAGCCTGCCATTGCAGGCCCGCTCTCAGGCTGGCACACTGGCC
TCAGCAGGTTTCAAGCTGCCCCCGGCTTACGATCCCAAGACTCGCACCGG
CACACCGGGCGTGTCTCCAGCCACTGTGCCGGTGCCCCAGGGGCTGTCGT
CACGCTCTACTCAGGCCGCTGCCGCCGCGGCGGCGGTGGCTGGGGCTCAC
AGCGTGGGTGGCGGGGATGATGATCCCCCCCGGGACTTTGGCGCCCGCCA
TCGTTCTGGGCAGGGAGTTGCCGCCTCGGGAAGGCCCGGGGGTCCAGGAA
GAGCTGCCCTGGATGGCAACGCGAACGGCGGCCGTGGCGTTGGGGACGGC
GGCGGCAGCGGCAGCGGCCCAGGAGCTGCCCCGAGGCATAAGGGGGCTGC
GAGAGCAACCGCTACGGCGACTGGGCTGCCAGTGCCCCAGCCAGATCATC
CTGCCAGGGGGTCTGGTGCTGCTGCCAGTGCAGTCGTTTTCCGGGCGGGT
TTCCGCATGCCCAAGAAGGCCGCCGGGTCGGGGGCCGCCGCGCAGCGCAC
CATCGCGCGGGCGGCGGCAGCGGCGGCTGTCGGGGCCGCGGCATCCACGA
GTGCTGAGACAGTCAATCCCAGATAGGCCAGTGCTGCTACACCTCAGGCT
AGCCTGAGGCTCGCCGACGGCAAGGGCCCGGGCCCCGGGCCGCCCTCCCC
ACCAGCCACCACCTCTGAGTCAGCGGGTGGTCTGAGCCTGCCATTGCAGG
CCCGCTCTCAGGCTGGCACACTGGCCTCAGCAGGTTTCAAGCTGCCCCCG
GCTTACGATCCCAAGACTCGCACCGGCACACCGGGCGTGTCTCCAGCCAC
TGTGCCGGTGCCCCAGGGGCTGTCGTCACGCTCTACTCAGGCCGCTGCCG
CCGCGGCGGCGGTGGCTGGGGCTCACAGCGTGGGTGGCGGGGATGATGAT
CCCCCCCGGGACTTTGGCGCCCGCCATCGTTCTGGGCAGGGAGTTGCCGC
CTCGGGAAGGCCCGGGGGTCCAGGAAGAGCTGCCCTGGATGGCAACGCGA
ACGGCGGCCGTGGCGTTGGGGACGGCGGCGGCAGCGGCAGCGGCCCAGGA
GCTGCCCCGAGGCATAAGGGGGCTGCGAGAGCAACCGCTACGGCGACTGG
GCTGCCAGTGCCCCAGCCAGATCATCCTGCCAGGGGGTCTGGTGCTGCTG
CCAGTGCAGTCGTTTTCCGGGCGGGTTTCCGCATGCCCAAGAAGGCCGCC
GGGTCGGGGGCCGCCGCGCAGCGCACCATCGCGCGGGCGGCGGCAGCGGC
GGCTGTCGGGGCCGCGGCATCCACGAGTGCTGAGACAGTCAATCCCAGAT
AG
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