mRNA_S-ischiensis_contig15.3470.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3470.1
Unique NamemRNA_S-ischiensis_contig15.3470.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:91078..92023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size528
Cds size525
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815732.143612-CDS-S-ischiensis_contig15:91077..911411622815732.143612-CDS-S-ischiensis_contig15:91077..91141Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 91078..91141 +
1695739882.1307113-CDS-S-ischiensis_contig15:91077..911411695739882.1307113-CDS-S-ischiensis_contig15:91077..91141Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 91078..91141 +
1622815732.1566045-CDS-S-ischiensis_contig15:91561..920221622815732.1566045-CDS-S-ischiensis_contig15:91561..92022Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 91562..92022 +
1695739882.1394577-CDS-S-ischiensis_contig15:91561..920221695739882.1394577-CDS-S-ischiensis_contig15:91561..92022Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 91562..92022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3470.1prot_S-ischiensis_contig15.3470.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 91078..92022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3470.1

>prot_S-ischiensis_contig15.3470.1 ID=prot_S-ischiensis_contig15.3470.1|Name=mRNA_S-ischiensis_contig15.3470.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=175bp
ALRPGGGGDTSRLTSWRRQLPGNNGGEHDEALAISARPPPGTVPLVPGTG
PGMGPQVLPRAWGPGTVEPSVHMDQTGVPHMEGIRSRAPPDAGAGITRGA
AGVCGGRQGVVDGAMELFFVNGAPPPPPPSAPLPRGSRAIGPGHGSTPQR
RPPGAVPGVRSGQAVTAARRRPEGR
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mRNA from alignment at S-ischiensis_contig15:91078..92023+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3470.1 ID=mRNA_S-ischiensis_contig15.3470.1|Name=mRNA_S-ischiensis_contig15.3470.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=946bp|location=Sequence derived from alignment at S-ischiensis_contig15:91078..92023+ (Schizocladia ischiensis KU_0333)
GCGCTTCGACCTGGAGGAGGAGGAGATACTAGTAGGCTTACCTCCTGGCG
GCGACAACTCCCTGGTGAGGACGCATTGGCGTGTATGTGTGTGTGTGTGT
GTGTGTGTGCGTGTGTGCGTGCGTGTGTTGGCGGCCCCGTAGGCAGACTG
CACCGATACCCGACAGGGCACACCCCATGCATTGGCCCTTCAAAATCCAC
ACCCTGTGCTAGATGGCTCGTTCCTCGTCACGTAGATGTGGTCCTTCAAG
TCAGGCAAGTGCTCTCATTCCACACGCATGGAGTGGTTTGATGGTACTAC
AGCTGTGCCTGCCAAAACCCCATCGCTCCGTGCATGCCTCCAGGGACGAA
GACCAAAGGCTTATGCACACGTGCGGGTTTGCAGCCCAAGTACATGTGCT
CACGGCTCTCCTCATGGTCACAACGCCGCACCCCCGCCTGCCTGCCCGCA
CCTACCCTGGTGGCATCATCCATCCCGCCCGCAGGAAACAACGGAGGGGA
GCATGATGAGGCCCTGGCCATCTCTGCCCGCCCCCCTCCCGGAACGGTCC
CGCTGGTCCCCGGAACCGGCCCCGGCATGGGCCCCCAGGTGCTTCCACGG
GCCTGGGGCCCTGGCACAGTCGAGCCCAGTGTCCACATGGATCAGACGGG
TGTGCCCCACATGGAAGGCATCCGCAGCAGGGCTCCTCCGGACGCCGGAG
CCGGCATCACACGCGGGGCGGCGGGTGTTTGCGGGGGCCGTCAAGGCGTG
GTGGACGGCGCGATGGAGCTCTTCTTTGTTAACGGAGCTCCGCCACCGCC
ACCGCCATCGGCACCCCTCCCGCGGGGCTCGAGAGCCATAGGGCCAGGGC
ATGGTTCTACCCCACAGCGGCGGCCCCCAGGGGCCGTCCCAGGCGTCAGG
TCAGGTCAAGCGGTGACGGCGGCCCGGCGCAGGCCGGAGGGGAGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig15:91078..92023+

>mRNA_S-ischiensis_contig15.3470.1 ID=mRNA_S-ischiensis_contig15.3470.1|Name=mRNA_S-ischiensis_contig15.3470.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1050bp|location=Sequence derived from alignment at S-ischiensis_contig15:91078..92023+ (Schizocladia ischiensis KU_0333)
GCGCTTCGACCTGGAGGAGGAGGAGATACTAGTAGGCTTACCTCCTGGCG
GCGACAACTCCCTGGCGCTTCGACCTGGAGGAGGAGGAGATACTAGTAGG
CTTACCTCCTGGCGGCGACAACTCCCTGGAAACAACGGAGGGGAGCATGA
TGAGGCCCTGGCCATCTCTGCCCGCCCCCCTCCCGGAACGGTCCCGCTGG
TCCCCGGAACCGGCCCCGGCATGGGCCCCCAGGTGCTTCCACGGGCCTGG
GGCCCTGGCACAGTCGAGCCCAGTGTCCACATGGATCAGACGGGTGTGCC
CCACATGGAAGGCATCCGCAGCAGGGCTCCTCCGGACGCCGGAGCCGGCA
TCACACGCGGGGCGGCGGGTGTTTGCGGGGGCCGTCAAGGCGTGGTGGAC
GGCGCGATGGAGCTCTTCTTTGTTAACGGAGCTCCGCCACCGCCACCGCC
ATCGGCACCCCTCCCGCGGGGCTCGAGAGCCATAGGGCCAGGGCATGGTT
CTACCCCACAGCGGCGGCCCCCAGGGGCCGTCCCAGGCGTCAGGTCAGGT
CAAGCGGTGACGGCGGCCCGGCGCAGGCCGGAGGGGAGGGAAACAACGGA
GGGGAGCATGATGAGGCCCTGGCCATCTCTGCCCGCCCCCCTCCCGGAAC
GGTCCCGCTGGTCCCCGGAACCGGCCCCGGCATGGGCCCCCAGGTGCTTC
CACGGGCCTGGGGCCCTGGCACAGTCGAGCCCAGTGTCCACATGGATCAG
ACGGGTGTGCCCCACATGGAAGGCATCCGCAGCAGGGCTCCTCCGGACGC
CGGAGCCGGCATCACACGCGGGGCGGCGGGTGTTTGCGGGGGCCGTCAAG
GCGTGGTGGACGGCGCGATGGAGCTCTTCTTTGTTAACGGAGCTCCGCCA
CCGCCACCGCCATCGGCACCCCTCCCGCGGGGCTCGAGAGCCATAGGGCC
AGGGCATGGTTCTACCCCACAGCGGCGGCCCCCAGGGGCCGTCCCAGGCG
TCAGGTCAGGTCAAGCGGTGACGGCGGCCCGGCGCAGGCCGGAGGGGAGG
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