mRNA_S-ischiensis_contig15.3467.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3467.1
Unique NamemRNA_S-ischiensis_contig15.3467.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:54279..57795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size845
Cds size843
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3467.1prot_S-ischiensis_contig15.3467.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 54279..57794 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.938684-CDS-S-ischiensis_contig15:54278..545061622815731.938684-CDS-S-ischiensis_contig15:54278..54506Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 54279..54506 +
1695739882.0579748-CDS-S-ischiensis_contig15:54278..545061695739882.0579748-CDS-S-ischiensis_contig15:54278..54506Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 54279..54506 +
1622815731.950207-CDS-S-ischiensis_contig15:55095..551851622815731.950207-CDS-S-ischiensis_contig15:55095..55185Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 55096..55185 +
1695739882.0669706-CDS-S-ischiensis_contig15:55095..551851695739882.0669706-CDS-S-ischiensis_contig15:55095..55185Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 55096..55185 +
1622815731.963235-CDS-S-ischiensis_contig15:56432..566301622815731.963235-CDS-S-ischiensis_contig15:56432..56630Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 56433..56630 +
1695739882.0756502-CDS-S-ischiensis_contig15:56432..566301695739882.0756502-CDS-S-ischiensis_contig15:56432..56630Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 56433..56630 +
1622815732.033305-CDS-S-ischiensis_contig15:56833..569051622815732.033305-CDS-S-ischiensis_contig15:56833..56905Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 56834..56905 +
1695739882.08413-CDS-S-ischiensis_contig15:56833..569051695739882.08413-CDS-S-ischiensis_contig15:56833..56905Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 56834..56905 +
1622815732.0431778-CDS-S-ischiensis_contig15:57539..577941622815732.0431778-CDS-S-ischiensis_contig15:57539..57794Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 57540..57794 +
1695739882.094389-CDS-S-ischiensis_contig15:57539..577941695739882.094389-CDS-S-ischiensis_contig15:57539..57794Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 57540..57794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3467.1

>prot_S-ischiensis_contig15.3467.1 ID=prot_S-ischiensis_contig15.3467.1|Name=mRNA_S-ischiensis_contig15.3467.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=281bp
GVASAKSPSEKQKKEREPGKLKARHPKVAKGKQSPGGGRKGVKKLFRRQA
PFDPPLKPCALCKKTKLGGVVCRVDRAHWTDPDWGKEGKWPMPEGFEKWY
NQVGSKSKEATTIQVDPSAASPPSLVLSLEGVSPSPSKHKKRASPGGTPT
SDGAGETVARKVKIKAPECLAEGCIHPARRGSVFCSETCAILASNQVADC
LLARRRRASRAWLKRVLANSTAKGKKGDLGTALPSASPANAERAAKCLLR
AAEVAAKAAAAGVMAEKEEGEAEGSGGTGKG
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mRNA from alignment at S-ischiensis_contig15:54279..57795+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3467.1 ID=mRNA_S-ischiensis_contig15.3467.1|Name=mRNA_S-ischiensis_contig15.3467.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3517bp|location=Sequence derived from alignment at S-ischiensis_contig15:54279..57795+ (Schizocladia ischiensis KU_0333)
GGGGTCGCCTCCGCCAAATCGCCCAGTGAGAAGCAGAAGAAGGAGAGGGA
GCCGGGCAAGCTGAAGGCCAGGCACCCAAAGGTGGCCAAGGGGAAACAGA
GCCCGGGGGGGGGCAGGAAGGGGGTCAAGAAGTTGTTCAGGAGGCAGGCA
CCGTTTGACCCCCCACTCAAGCCCTGTGCCTTGTGCAAGAAAACCAAGCT
GGGCGGTGTTGTCTGCCGCGTGGACAGGGTGAGTAAACAAAATAGTACTT
CGTAATTGCAAGTAAACAAAAAAGTATTCACAGGTAGAGCCTAGAGCTCT
ACACACTGAAGTACTTGCAAGTGCTGGCAAGTGCACCGCCCGGTTTTATA
AGTATCAATACAGTGGAGTGTACTTGTACCATCCCCCTCTTCACACACAC
CCCATCCGGCCCCGTGCCTCATTGCCGCCAAAGTGAGTGCTGACACCCTT
GTATAGGCATAGATATATTCTTGGTCTTCTTAGAGGCGCGAGCTTTACAT
GCACAGGCATCTTCTGTTTGTGCAAGACAACCTAGATTGATTCACTCGGC
TAGGTTAGGGAAAAGGAAAATGGACATTGGATGTACAGTACTGAACGGTG
CCGGATTTTCTTGCCGACGCCTCCCTTCTGTAGGTATACGATACACACTC
AACGCTTGCGGTCCTTGACTTGAATAGTGCTATTGTAGTGCTAATCTTTT
TCATTTTGTCCCCGCACGCCTTGTCATGGATCCCCGTGGGCTTGGTGCAT
GTGCTACGTGCATGTGACCGGCTTACACTGGGCTATTGGCTTGGGCTGTA
TGAACTCCTCTGAGCAGGCGCATTGGACTGACCCCGACTGGGGCAAGGAG
GGCAAGTGGCCCATGCCGGAGGGCTTTGAGAAGTGGTACAATCAAGTGGG
CTCCAAGGTGAGCGGGAACAGCCCTACATGCTGTTCTAGTATTCTTTTAA
GTACTTCCAAGGGAGTCCATGGCTAAATGGCTGCTCCTGTCGGAGGGCAA
AACCGAAGTTTTGACTTGGACCGTCGGCTTTGCACGCAAGGTTATGTCGC
AAGACGAGCCAATTACAGTAGTACATATATACACTTCTAAGCAGCCAAGA
GATTTGGCCGTAGACGCCTGCAGCGCTTCACATTGCAAGACATAGTAGTC
ATACTGGATTGGCTACAAAGAGTGTGCTGTACGAGAAATGTACGAGTGTG
TTGGGAAAATTTGCGGGCCAGAGCACTACTGTACTACCTAGGAAAGCAAA
GCGGCAGACGTGCGCATGAAACCCTGCACGGTACAGTACTGTTGAGCTCT
TGATGAAATGCGTACAGTAGCTTCCCAGTGCTTACGGGTAGCCGCTGCCC
ACATTGTACAGTATCCAGTATTCGGTACAGTATGGACCTTAGACGCGCAC
TGCGTTGCAACAAAGGCCGCAACAGGCGTCTCCCCCAAGGCAGTAGGCTC
TACAGTACAGTACATTGGGCACTTGTATGCGAAGTATACAGTAGTATAGT
ATAACTCTTGTGTTTGGAAGTAAGTAGCAGGAGGCTGAGGCTCATGTATG
CCCTGTCTTGATGATATCTCCCCAACCTGTAGACGTTCTTGTACTTGCTC
CACTGCATTCAATATACGTTAGTCGAGAGAGGCTTGCTGTAGTTCATCAG
GTACAGGACAGTACAGTAGTGCTTGAAGTACTTGCAGGCGTAGGCCTGCC
AAGTGCTGTGTGGTGTACTCGTACTCTACTTGTACAGTATACAGTACAGT
ATACCTAAAGTACAATACAGTGAAGACTACTTGTACGATTACTTGCACTG
ACATGTCAACTTCTTCCGGGTGGGGTTGTCAGAAGTCGGGGTGTGCCGGC
AGCAAGATACCGGGGTAGGTTGTTGTGGTTGTTTTCCTCCCCGGTACGCG
CCTCCCCACAGTCATATTCCAGCCTAAGCCATGTTGCCAGACGGCTCGTG
TCAGCTATGACAGGTGATATACTGATATACTTATACATTGTCACTTTGTA
CCCAAGGGCCAGAATACTTGTAGGAGGACAAACTCAACCAATGGCCTCCT
TTCTGCTGTTTCTCCTCCTCGACCTCCTCCACCTCCTCACCCGCTCCCCG
CATTTCCCCCGCACCCTCATCCCCGGGTGGTTACTTATACCACCACACCA
CCAGTCCAAGGAAGCAACCACCATCCAGGTGGACCCCTCAGCTGCCAGCC
CCCCCAGCCTTGTGCTTTCTTTGGAAGGTGTCTCGCCTTCCCCTAGCAAG
CACAAAAAGCGGGCTTCGCCGGGGGGCACTCCCACCAGCGATGGGGCAGG
CGAGACGGTGGCCCGCAAAGTCAAGATCAAGGCACCCGAGTGCCTGGCGG
AGGTGTGTATGTGTGTTAGTGAGCAAGTGTGCCCTTGGGCGTTTGAGGCT
AGTGTGCAGTGCTGGCTGTGTTACGCACTATACTCCTACTTCCGAAGTAG
TTTGCAATGTACACACATAAGTTACTGTACAATATGCATAGCAAGTACTC
CACAGCTGCGGCGACCTACTCACACACCCACCCGTGTGTCGTGTTGGTAC
ACCAGGGCTGCATCCACCCGGCACGGCGAGGGTCAGTCTTCTGCTCAGAG
ACATGTGCCATACTGGCAAGCAACCAGGTAAGTACGTGTTGTTCCAGGTG
CTGCACATGCACTTTGTATTGTATCGGATGACAAGTGGCCACCTGGCATG
GTCCAGGGTCACCTAAAGACTGTACTCGAGTACACTGAGGGATGTACGGC
AGTTGAGGGATAACTGTACAGTAGTAGAGCGCTACAGACGCCACAGCAAA
ACTACAAAGCACTACTGTACTCTACTCCACTGTACTGTACTGCGCTATAG
GAATAAGAGGGGACAACAACTGCAATGACTGCGCACTACAGTACTCAGTA
GTGCTTCCAAGTACATGTAGTCAACCAATTGGCATGTGTTGCTACACTAC
TACTACACCTCGTACGCTGACATGTCTGTCTATATGGAACAGTTCTCCTT
GGCTGCCCCAAACATAGCACCTCTTGGCCGGGCGGCGCAAAGGCTGCAAA
TGGGGGGCTTGGGTCCCCTTGCGACTGATTTCTGCAAACATTCTGGGAAT
GCGTATGCCCCCCCCCCAGCCACACACACACACCCCATGGGACACATGAT
CCATGGTCTGAAGGCTAGGGCATGCCAAGCTGCTCCTGTGGACTTGTTCA
AAGTACAGTTCGGCAAGCAAGCAACGCTAACAATTTGTACCCCTTTGTAC
CCTTTGCTCAGGTGGCGGACTGCCTTCTTGCACGGCGCCGCAGGGCCTCT
CGCGCATGGCTAAAGCGGGTGCTCGCAAACTCCACCGCCAAGGGCAAGAA
GGGCGATTTAGGCACCGCACTGCCCTCCGCCTCCCCCGCAAACGCTGAGA
GAGCCGCAAAATGCTTACTAAGAGCCGCTGAGGTTGCCGCCAAGGCTGCC
GCTGCTGGGGTGATGGCAGAGAAGGAAGAGGGGGAGGCGGAAGGCAGTGG
AGGTACTGGGAAGGGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig15:54279..57795+

>mRNA_S-ischiensis_contig15.3467.1 ID=mRNA_S-ischiensis_contig15.3467.1|Name=mRNA_S-ischiensis_contig15.3467.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1686bp|location=Sequence derived from alignment at S-ischiensis_contig15:54279..57795+ (Schizocladia ischiensis KU_0333)
GGGGTCGCCTCCGCCAAATCGCCCAGTGAGAAGCAGAAGAAGGAGAGGGA
GCCGGGCAAGCTGAAGGCCAGGCACCCAAAGGTGGCCAAGGGGAAACAGA
GCCCGGGGGGGGGCAGGAAGGGGGTCAAGAAGTTGTTCAGGAGGCAGGCA
CCGTTTGACCCCCCACTCAAGCCCTGTGCCTTGTGCAAGAAAACCAAGCT
GGGCGGTGTTGTCTGCCGCGTGGACAGGGGGGTCGCCTCCGCCAAATCGC
CCAGTGAGAAGCAGAAGAAGGAGAGGGAGCCGGGCAAGCTGAAGGCCAGG
CACCCAAAGGTGGCCAAGGGGAAACAGAGCCCGGGGGGGGGCAGGAAGGG
GGTCAAGAAGTTGTTCAGGAGGCAGGCACCGTTTGACCCCCCACTCAAGC
CCTGTGCCTTGTGCAAGAAAACCAAGCTGGGCGGTGTTGTCTGCCGCGTG
GACAGGGCGCATTGGACTGACCCCGACTGGGGCAAGGAGGGCAAGTGGCC
CATGCCGGAGGGCTTTGAGAAGTGGTACAATCAAGTGGGCTCCAAGGCGC
ATTGGACTGACCCCGACTGGGGCAAGGAGGGCAAGTGGCCCATGCCGGAG
GGCTTTGAGAAGTGGTACAATCAAGTGGGCTCCAAGTCCAAGGAAGCAAC
CACCATCCAGGTGGACCCCTCAGCTGCCAGCCCCCCCAGCCTTGTGCTTT
CTTTGGAAGGTGTCTCGCCTTCCCCTAGCAAGCACAAAAAGCGGGCTTCG
CCGGGGGGCACTCCCACCAGCGATGGGGCAGGCGAGACGGTGGCCCGCAA
AGTCAAGATCAAGGCACCCGAGTGCCTGGCGGAGTCCAAGGAAGCAACCA
CCATCCAGGTGGACCCCTCAGCTGCCAGCCCCCCCAGCCTTGTGCTTTCT
TTGGAAGGTGTCTCGCCTTCCCCTAGCAAGCACAAAAAGCGGGCTTCGCC
GGGGGGCACTCCCACCAGCGATGGGGCAGGCGAGACGGTGGCCCGCAAAG
TCAAGATCAAGGCACCCGAGTGCCTGGCGGAGGGCTGCATCCACCCGGCA
CGGCGAGGGTCAGTCTTCTGCTCAGAGACATGTGCCATACTGGCAAGCAA
CCAGGGCTGCATCCACCCGGCACGGCGAGGGTCAGTCTTCTGCTCAGAGA
CATGTGCCATACTGGCAAGCAACCAGGTGGCGGACTGCCTTCTTGCACGG
CGCCGCAGGGCCTCTCGCGCATGGCTAAAGCGGGTGCTCGCAAACTCCAC
CGCCAAGGGCAAGAAGGGCGATTTAGGCACCGCACTGCCCTCCGCCTCCC
CCGCAAACGCTGAGAGAGCCGCAAAATGCTTACTAAGAGCCGCTGAGGTT
GCCGCCAAGGCTGCCGCTGCTGGGGTGATGGCAGAGAAGGAAGAGGGGGA
GGCGGAAGGCAGTGGAGGTACTGGGAAGGGCGTGGCGGACTGCCTTCTTG
CACGGCGCCGCAGGGCCTCTCGCGCATGGCTAAAGCGGGTGCTCGCAAAC
TCCACCGCCAAGGGCAAGAAGGGCGATTTAGGCACCGCACTGCCCTCCGC
CTCCCCCGCAAACGCTGAGAGAGCCGCAAAATGCTTACTAAGAGCCGCTG
AGGTTGCCGCCAAGGCTGCCGCTGCTGGGGTGATGGCAGAGAAGGAAGAG
GGGGAGGCGGAAGGCAGTGGAGGTACTGGGAAGGGC
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