mRNA_S-ischiensis_contig15.3461.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig15.3461.1
Unique NamemRNA_S-ischiensis_contig15.3461.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig15.3461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig15contigS-ischiensis_contig15:35439..38526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size605
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig15.3461.1prot_S-ischiensis_contig15.3461.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig15 35654..38526 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.3736691-UTR-S-ischiensis_contig15:35438..356531622815744.3736691-UTR-S-ischiensis_contig15:35438..35653Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 35439..35653 +
1695739888.2790964-UTR-S-ischiensis_contig15:35438..356531695739888.2790964-UTR-S-ischiensis_contig15:35438..35653Schizocladia ischiensis KU_0333UTRS-ischiensis_contig15 35439..35653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815744.3839786-CDS-S-ischiensis_contig15:35653..358931622815744.3839786-CDS-S-ischiensis_contig15:35653..35893Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 35654..35893 +
1695739888.2892573-CDS-S-ischiensis_contig15:35653..358931695739888.2892573-CDS-S-ischiensis_contig15:35653..35893Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 35654..35893 +
1622815744.3939817-CDS-S-ischiensis_contig15:38376..385261622815744.3939817-CDS-S-ischiensis_contig15:38376..38526Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 38377..38526 +
1695739888.2993677-CDS-S-ischiensis_contig15:38376..385261695739888.2993677-CDS-S-ischiensis_contig15:38376..38526Schizocladia ischiensis KU_0333CDSS-ischiensis_contig15 38377..38526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig15.3461.1

>prot_S-ischiensis_contig15.3461.1 ID=prot_S-ischiensis_contig15.3461.1|Name=mRNA_S-ischiensis_contig15.3461.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=130bp
MDTPGASDSDEKFWGLIRAQQARDGVLDAALWKQAPARAGSNPCALCKDG
IAERWLTRCKGRAGGAGGCTKWVHPACAWEHRYAIRCTAGESASQGGSGD
DRLPVVFFFCPDHEEVQTFCSCGRDGGEE*
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mRNA from alignment at S-ischiensis_contig15:35439..38526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig15.3461.1 ID=mRNA_S-ischiensis_contig15.3461.1|Name=mRNA_S-ischiensis_contig15.3461.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3088bp|location=Sequence derived from alignment at S-ischiensis_contig15:35439..38526+ (Schizocladia ischiensis KU_0333)
GTGCCACAGACGGAGCCCACCAGACCACAAGGAATCAAGCGAGGGAGGGA
GGGGGCGTGCGGCCCTCAGTGGAACGAGGATTGAATAACGTACTCACCTC
CGCTTCGTGCGTTTCACGTTTGTTTGTCGCTGTCAACCCCCGCCAACCGG
GGGGGCGACGGGCGGGGTGGCGCGGGCGCGATCTCTCGTTGACATTGATT
GCCGTGTGATGAGATATGGACACACCAGGGGCTTCCGACAGTGACGAGAA
ATTCTGGGGACTCATACGCGCTCAACAAGCCAGGGACGGAGTTCTTGATG
CTGCCCTATGGAAGCAGGCCCCCGCCCGGGCCGGCTCCAATCCATGCGCC
CTCTGCAAGGACGGGATCGCGGAGCGGTGGCTGACCAGGTGCAAAGGTCG
GGCTGGAGGCGCAGGTGGCTGCACGAAGTGGGTGCACCCTGCTTGCGCTT
GGGAGGTGAGGGCTTCCTTCTGGGGAGGCAACCTCGGTGGCTCGTGTGTG
CAGCACGAGCGCAACACACCGTGCAGACATATGACTACGCACACTTTCTC
GCACGCATTCACAAAATTTACGGCGGTCAGGGACTCGAGACAACAGGTGG
GCTGGGGCTTGATGGGTCGCAGAAGTCGCAGTGATGTCGCAGCGCCTTGA
GTCATTTGCATGTTCTTGGTTTGCTGTAACTTGCCGCAAGGGGGCCCGCC
AACAACTTTCTTTGGCTCCACACCCAAGAAACTGCCCTGTTCCCCCTGCC
GGGGGTTCTAAAATCAAGCAGTTTTAATGTACGAGTACGCACGGATGCCA
ACACGCCTGTGCCGGCTGCCCTGGCCCGAGCCCCCCCCGGGAGGGCCAGT
CAGTCAATTTGGGGGGGGTTATGGAATCTGATTTTCACTTTCGAGGCCGG
ATTTGGCCTAATCTCGCCCCAGGGGGGCGATGCTCACAATGAATGGGACG
ACGTCTCACTTCCAGGTGCCCAAAAATTGGCAAATGATAGACTTCCTGGC
CTGACGTCTGGGGGTATGGAGCCGGCACTCCATCTCCAATCCGCGGGCCC
CCTTGCTTCCCCAGGGGGGTTGTAGGGCGTGGTGTTGGTGCGTGTGGGGG
GGGGGGTAACCGGCCGGAGGGGGGAAACACATGCATGCCATACCCACTGT
CTCCCTCTGTACCCACGGCGCCGTGCATGTTTCAGCTGTTGAGCCTTGTG
GTGTGCTCCATTGATTCTCCAGTTATGAAGAGGGGGGCGTTGCTCTCCTC
GCCCACCCCGCCCACCTGCCAACAGTTGTAATCTCCCCTCAAGTCGTGGA
CTTTCATCGTCCCATGCACGGTGTGCATTTTTCCACCGACCAGCAGTGCA
GTGGGGCCAGCTGACCGCCGATCATTGCCATTTGGACATTGTGGCCCGAT
GACCATGTGGCCCTTCATCCTTAGATATACTCCAAGGGAAATGAATCATT
GCTGAGTTTGCTCCAAGACAACCCTCGTGGGAGATGCCCCCGAAACTTCC
CCACCCAGCCCCCCAACATTTCTTGTGAGAGCAGCACTGACAAAGTTGCC
GCCTGCCAGGCTAAATTATGCAAGGCAGCACTACATTGTCTGCAAGTCCA
CCGGTCAGCCTTCAGGGACAGCACGGACGGGGCCTGCTATGCCGTGCGAT
AATTCGCGGGAGATCTTGTCTGCTGATGTTACCCCCCCCTGCTCATGGCT
CTGCCTGTCCATGTATACTTTCCCATTTTTATCTAGGCCAATCTCCCCCA
CACCTGGAACACAGTTTGCTAGGTGAGGGGGAACCAAGCTCCAGTCTCCG
GACTCATGTTGATGAAGTGAGGGTGTGTGTGGTCACTTGGCCGCTCTTCA
ACTCCACCTCCGCCACGGGAGCCGTGTCGGAGGGTGGGCTACGTCGGGAA
AAAGCCTCCTCAGAGGGCGACACACCAGCTGCTGTAGGGACGCATCACGT
TAACGAGCTTGGTTGAGGCGTGGAGGGTGTCCCTCAGCGTTGAACTGGGT
TGCTATTTTCTTCCAAGCACCGCGATAAATACCTACATTATTTACAGTAC
AATTGCTTACAGTTTGCTCCGTGGTCTCTGGGTGACAACGATCGTAGTGT
GAACTAGAACAAGTAGTTCGAGCAGCACACTCTAGTAAGCGTGCTCACCT
CGTGCTTGCGCTTGCCGAAAAGACCATTGCCCAATTCACCTCCTCCAGAG
GCCGTGTCGAATTGTGTGCTGCTTGGAAGTACTTGCAAGTGCTGTACTGT
ACAGTAGACATCTGACAAGTTGAATGTGTCTGCTCACATACAAGGTAGAA
GAGCCTTTTGCTTATATTTACTGTACTGTAGAGGAGAGTCAGTCACGTGA
TGGATCTCCGACCACCCCAAGCTGTGCCCCTCGTCAGGACAAGGAGAAGG
AAGAGAAAAGGTACTCATATTCTTGTTACAGTTACACACAGGTGGAGAAG
ATCCTCCCCCTCTGCAGCACTGTCGTGCATACACCAGCTTGCTGCGGCCG
TCGGGTGACGGTGATTGTGATTGTGATGCGCACTGTGCACACGCATCATG
TCATGTCAATACACGAGGTGGACAAAGTGACCTCAGATACTTCCAAGCAC
CTCTTGAGTTAGTTGAACACACGCATGCTGCACCCATGGTCTTGAGCGCC
TCCCACTCCAACACTTGTGGCACTTGCTCTTCACACATTGGTGTAGTGCA
TGTATTGCACACTGTGCAGCCTGCCCCTCCTCGTAGTAAAGCAGAAATGC
CTTGAGGTGCTTCCGAAACACTGTGTGTGCGTGTGTGTCTCGCTCCACCA
ACGCACACCCTCACATACCTCTCCTCCCATGCACCAATCCTGTGTCCGCA
CAAGGTCCCTGGAAACACATGCCGCACACGACACCCTGACCTCTCCGCAC
CCACCTCCTGCCTACCCTTTGTCCCCCGTGTGCTACAGCATCGATACGCC
ATCAGGTGCACAGCCGGCGAGAGCGCCTCCCAGGGTGGCAGTGGTGACGA
CCGATTGCCGGTGGTGTTCTTTTTCTGCCCCGACCACGAGGAAGTGCAGA
CCTTCTGCTCCTGCGGCAGGGATGGGGGCGAAGAGTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig15:35439..38526+

>mRNA_S-ischiensis_contig15.3461.1 ID=mRNA_S-ischiensis_contig15.3461.1|Name=mRNA_S-ischiensis_contig15.3461.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=780bp|location=Sequence derived from alignment at S-ischiensis_contig15:35439..38526+ (Schizocladia ischiensis KU_0333)
ATGGACACACCAGGGGCTTCCGACAGTGACGAGAAATTCTGGGGACTCAT
ACGCGCTCAACAAGCCAGGGACGGAGTTCTTGATGCTGCCCTATGGAAGC
AGGCCCCCGCCCGGGCCGGCTCCAATCCATGCGCCCTCTGCAAGGACGGG
ATCGCGGAGCGGTGGCTGACCAGGTGCAAAGGTCGGGCTGGAGGCGCAGG
TGGCTGCACGAAGTGGGTGCACCCTGCTTGCGCTTGGGAGATGGACACAC
CAGGGGCTTCCGACAGTGACGAGAAATTCTGGGGACTCATACGCGCTCAA
CAAGCCAGGGACGGAGTTCTTGATGCTGCCCTATGGAAGCAGGCCCCCGC
CCGGGCCGGCTCCAATCCATGCGCCCTCTGCAAGGACGGGATCGCGGAGC
GGTGGCTGACCAGGTGCAAAGGTCGGGCTGGAGGCGCAGGTGGCTGCACG
AAGTGGGTGCACCCTGCTTGCGCTTGGGAGCATCGATACGCCATCAGGTG
CACAGCCGGCGAGAGCGCCTCCCAGGGTGGCAGTGGTGACGACCGATTGC
CGGTGGTGTTCTTTTTCTGCCCCGACCACGAGGAAGTGCAGACCTTCTGC
TCCTGCGGCAGGGATGGGGGCGAAGAGTGACATCGATACGCCATCAGGTG
CACAGCCGGCGAGAGCGCCTCCCAGGGTGGCAGTGGTGACGACCGATTGC
CGGTGGTGTTCTTTTTCTGCCCCGACCACGAGGAAGTGCAGACCTTCTGC
TCCTGCGGCAGGGATGGGGGCGAAGAGTGA
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