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Homology
BLAST of mRNA_S-ischiensis_contig15.3458.1 vs. uniprot
Match: A0A7S2G4U7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G4U7_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 1.320e-16 Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = 3
Query: 216 YMDRWHRLIVNPPAELRHCDIPWLPRLSAKLPG---GAEPFDVIGVSEGAGVHAKKAALRAASLRWHPDKFMTRWGALLAEEERERVLKDAQAMIQRITALRQRLNA 527
Y RW + A + + DIPW+P L+ G G E FD++G+S+ A KK A+RAASLRWHPDKF +G L E++R RV++ + M QRI L+ RL A
Sbjct: 8 YALRWTEFLRPSDASISYDDIPWIPVLAETRLGMDDGVEKFDILGISDHATHEEKKQAVRAASLRWHPDKFTQAFGRRLLEKDRGRVMESVKLMSQRINQLKDRLRA 114
BLAST of mRNA_S-ischiensis_contig15.3458.1 vs. uniprot
Match: A0A8J5XNL3_DIALT (RanBP2-type domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XNL3_DIALT) HSP 1 Score: 61.2 bits (147), Expect = 1.430e-6 Identity = 41/103 (39.81%), Postives = 57/103 (55.34%), Query Frame = 3
Query: 222 DRWHRLIVNPPAELRHCDIPWLPRLSAKLPGGAEPFDVIGVSEGAGVHA-KKAALRAASLRWHPDKFMTRWGALLAEEERERVLKDAQAMIQRITALRQRLNA 527
++W + PA +R D+PWLP S +L D +G+ GA A +K A RAAS+RWHPDKF +GA L + + ERV+ R+T+ Q LNA
Sbjct: 669 EQWAAFVGALPAVIRFRDVPWLPIESEELLA-----DALGLPRGAADAASRKRAHRAASMRWHPDKFTQLFGARLLDADYERVMA-------RVTSTSQALNA 759
BLAST of mRNA_S-ischiensis_contig15.3458.1 vs. uniprot
Match: A0A087SCV0_AUXPR (NF-kappa-B inhibitor-like protein 1 n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SCV0_AUXPR) HSP 1 Score: 57.4 bits (137), Expect = 5.930e-6 Identity = 36/103 (34.95%), Postives = 50/103 (48.54%), Query Frame = 3
Query: 201 ARVQQYMDRWHRLIVNPPAELRHCDIPWLPRLSAKLPGGAEPFDVIGVSEGAGVHAKKAALRAASLRWHPDKFMTRWGALLAEEERERVLKDAQAMIQRITAL 509
AR Y RW R + PPA + D+PW+ LS A + + A++ +RA +RWHPDKF +R+G LA E VL A+ Q + AL
Sbjct: 116 ARRASYEARWQRFVAAPPASIGLRDVPWI--LSGPQDLDAAQLRRVVLYGATDAGAQRRCIRAELVRWHPDKFQSRFGQRLAAAEAVGVLAGVVALSQSLNAL 216
BLAST of mRNA_S-ischiensis_contig15.3458.1 vs. uniprot
Match: A0A3M7KQE7_AUXPR (NF-kappa-B inhibitor-like protein 1 n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KQE7_AUXPR) HSP 1 Score: 57.4 bits (137), Expect = 1.120e-5 Identity = 36/103 (34.95%), Postives = 50/103 (48.54%), Query Frame = 3
Query: 201 ARVQQYMDRWHRLIVNPPAELRHCDIPWLPRLSAKLPGGAEPFDVIGVSEGAGVHAKKAALRAASLRWHPDKFMTRWGALLAEEERERVLKDAQAMIQRITAL 509
AR Y RW R + PPA + D+PW+ LS A + + A++ +RA +RWHPDKF +R+G LA E VL A+ Q + AL
Sbjct: 188 ARRASYEARWQRFVAAPPASIGLRDVPWI--LSGPQDLDAAQLRRVVLYGATDAGAQRRCIRAELVRWHPDKFQSRFGQRLAAAEAVGVLAGVVALSQSLNAL 288
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Viridiplantae |
| Seed ortholog score | 61.2 |
| Seed ortholog evalue | 5.6e-07 |
| Seed eggNOG ortholog | 3075.A0A087SCV0 |
| KEGG ko | ko:K09256 |
| EggNOG free text desc. | negative regulation of lipopolysaccharide-mediated signaling pathway |
| EggNOG OGs | 28M54@1,2QTMZ@2759,34M5Q@3041,37WPN@33090 |
| COG Functional cat. | S |
| Best tax level | Chlorophyta |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03000,ko03110 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | DnaJ domain |
| Ec32 ortholog | Ec-24_001530.1 |
| Exons | 3 |
| Model size | 1063 |
| Cds size | 543 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815744.21081-UTR-S-ischiensis_contig15:22497..22829 | 1622815744.21081-UTR-S-ischiensis_contig15:22497..22829 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig15 22498..22829 - |
| 1695739888.1814325-UTR-S-ischiensis_contig15:22497..22829 | 1695739888.1814325-UTR-S-ischiensis_contig15:22497..22829 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig15 22498..22829 - |
| 1622815744.265341-UTR-S-ischiensis_contig15:24285..24473 | 1622815744.265341-UTR-S-ischiensis_contig15:24285..24473 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig15 24286..24473 - |
| 1695739888.2249088-UTR-S-ischiensis_contig15:24285..24473 | 1695739888.2249088-UTR-S-ischiensis_contig15:24285..24473 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig15 24286..24473 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815744.2224295-CDS-S-ischiensis_contig15:22829..23087 | 1622815744.2224295-CDS-S-ischiensis_contig15:22829..23087 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig15 22830..23087 - |
| 1695739888.1933224-CDS-S-ischiensis_contig15:22829..23087 | 1695739888.1933224-CDS-S-ischiensis_contig15:22829..23087 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig15 22830..23087 - |
| 1622815744.238175-CDS-S-ischiensis_contig15:23334..23542 | 1622815744.238175-CDS-S-ischiensis_contig15:23334..23542 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig15 23335..23542 - |
| 1695739888.2047687-CDS-S-ischiensis_contig15:23334..23542 | 1695739888.2047687-CDS-S-ischiensis_contig15:23334..23542 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig15 23335..23542 - |
| 1622815744.2532861-CDS-S-ischiensis_contig15:24208..24285 | 1622815744.2532861-CDS-S-ischiensis_contig15:24208..24285 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig15 24209..24285 - |
| 1695739888.2139425-CDS-S-ischiensis_contig15:24208..24285 | 1695739888.2139425-CDS-S-ischiensis_contig15:24208..24285 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig15 24209..24285 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig15.3458.1 >prot_S-ischiensis_contig15.3458.1 ID=prot_S-ischiensis_contig15.3458.1|Name=mRNA_S-ischiensis_contig15.3458.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=181bp
MQDLARVQQYMDRWHRLIVNPPAELRHCDIPWLPRLSAKLPGGAEPFDVI
GVSEGAGVHAKKAALRAASLRWHPDKFMTRWGALLAEEERERVLKDAQAM
IQRITALRQRLNAAGAACTHGHGVPGRQAEAPVVATTPVPGKNDEPVGGE
PATPSNACETKAGLQTDTGGCQTVSPVKPA* back to topmRNA from alignment at S-ischiensis_contig15:22498..24473- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig15.3458.1 ID=mRNA_S-ischiensis_contig15.3458.1|Name=mRNA_S-ischiensis_contig15.3458.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1976bp|location=Sequence derived from alignment at S-ischiensis_contig15:22498..24473- (Schizocladia ischiensis KU_0333)
GTGGTGGTGGCAGTGGAGCGGGACGAGGCACAGAGTCTGGGTTGCCTGGA
GGACGAGGAGTGCCACCTGGGTCCCCTGGGTCTGGTGCCTCCGCAACTCC
TGCCGTGGGGGTGAGGGGCTCCACGGCGGAGAAGGAGAAGGCCTTTGCCG
TCCGGGAGAGAGCTGCGCGCAGGGGACACTTTGAGAGAATGCAGGACCTG
GCGAGGGTACAGCAATACATGGACAGGTGGCATCGTCTCATCGTCAACCC
CCCCGCGGAGCTCAGGTACGATGCACAACTACAGTACGAGTACGTAATAA
GCTACTACTTCGAAGTACTATTCAGTAGTAAGTAGTGCTTCGAAGTACTC
GTATATATATATTGGAAGTATTTCCAGGTAAGTGTACTGTACTTCACCAT
ACAATACAAGCATTTCGAACTATGCTTAGGGAAGGATGGGAGGATGGGAT
GGGGGTATCTGCGCTCAGCTACCGTTGCTATCGTTTAGGGAAGTGTACCA
TACCGCAAATCCATGCTGGTAAACAAGCCTCCTTTGCATCCAACCCTCGG
CCATGACACGAACTAACTATTGTACAGTACAGTACAATAGAAGTGCAGGA
ACTGACTCTAGTTGTAGGTACCTCTGCACCAAGTCAGGTGGTATTGAATT
GAGTACGAGTGTACCACTACTACCGTACAGTGCAAATAGCAGCATACAAG
TATAGTAGTACTGCTTTTGAGAATATAAACAAGCAAGGCAATCCACGTGC
TACCCTACTCAAGTAGCAGAATGTCAAGCACTTCAAGTGTACACTGATCT
TTATTTGCGTCCATGGGCAAAGTACCTAAACATCCTGGAACTGTCCCGAA
CCTGTCCCCCCCAACTGACACTGTCAACGGTTTCCCATCAAACACCGGCG
GCCCTCTGAACCTGTACACTGTACTGCGTAGGCACTGTGACATCCCGTGG
CTTCCCAGGCTGTCGGCCAAGTTGCCGGGGGGGGCGGAGCCGTTTGACGT
GATTGGTGTGAGCGAGGGGGCCGGTGTGCACGCCAAGAAGGCGGCCCTGC
GTGCGGCTAGCCTGCGATGGCACCCAGACAAGTTCATGACCCGCTGGGGA
GCCCTCCTGGCCGAGGAAGAGAGGGAGCGGGTGCTCAAGGTGGGCATTGC
TACCACACACGAGTACAGTAGCATATTGCCATATTGTCATCTTGTCTTGT
CTCCCACAACGATTGTACTATGTCCTTTGGCATACTAGTACTTGGGCAAC
AGCTGACTGCTTTAAATTCGTAAGCTGTGGCTTAGCCACTCTGGTGGCGT
AAAGTAAATTGACATCCTGGCAGGAAAACCCTACTCTAAGTCAACAAATG
CAGTACAACCACGTGGCCCGGCCGCTGCTGTAACAGGATGCCCAGGCAAT
GATCCAACGCATCACCGCCCTGCGCCAAAGGCTCAACGCCGCTGGTGCTG
CATGCACACATGGACACGGCGTGCCAGGCAGGCAGGCTGAAGCACCCGTG
GTTGCCACAACTCCAGTCCCGGGAAAAAACGACGAACCCGTGGGTGGGGA
GCCGGCCACCCCGAGCAACGCCTGTGAAACCAAAGCGGGGTTACAGACTG
ACACGGGCGGGTGTCAAACTGTATCTCCTGTGAAGCCAGCGTGACCTAAA
CCCTAGCTTGTACTGAATCCTCGTACTTGGGAGTAGCCTGTACTTGACTG
TACTGTACCGTTAGGTACTGTACGAGCGCCAAACAGTGTCTCCTAACGGT
TCCAAGGTGCAGAAGACCTTCACCCCACACAAACTTAGCCGACCTCAGCC
GTGTTGGCTGCGTGTCAGGCTTCAGGGGGGCAAAGTTGTTGACACAGGGT
TACTGTGGATTGTCCCAGGCCTAACCTTGATGACCACTGTAGTGAGTTTA
CTCAAAGTGCAATTGCTGTTAAGTTAGCTACATTTGCTGAACAGATGCAA
TAGAAGCAGGGTAGACTACATTCCCC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig15:22498..24473- >mRNA_S-ischiensis_contig15.3458.1 ID=mRNA_S-ischiensis_contig15.3458.1|Name=mRNA_S-ischiensis_contig15.3458.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1086bp|location=Sequence derived from alignment at S-ischiensis_contig15:22498..24473- (Schizocladia ischiensis KU_0333)
ATGCAGGACCTGGCGAGGGTACAGCAATACATGGACAGGTGGCATCGTCT
CATCGTCAACCCCCCCGCGGAGCTCAGATGCAGGACCTGGCGAGGGTACA
GCAATACATGGACAGGTGGCATCGTCTCATCGTCAACCCCCCCGCGGAGC
TCAGGCACTGTGACATCCCGTGGCTTCCCAGGCTGTCGGCCAAGTTGCCG
GGGGGGGCGGAGCCGTTTGACGTGATTGGTGTGAGCGAGGGGGCCGGTGT
GCACGCCAAGAAGGCGGCCCTGCGTGCGGCTAGCCTGCGATGGCACCCAG
ACAAGTTCATGACCCGCTGGGGAGCCCTCCTGGCCGAGGAAGAGAGGGAG
CGGGTGCTCAAGGCACTGTGACATCCCGTGGCTTCCCAGGCTGTCGGCCA
AGTTGCCGGGGGGGGCGGAGCCGTTTGACGTGATTGGTGTGAGCGAGGGG
GCCGGTGTGCACGCCAAGAAGGCGGCCCTGCGTGCGGCTAGCCTGCGATG
GCACCCAGACAAGTTCATGACCCGCTGGGGAGCCCTCCTGGCCGAGGAAG
AGAGGGAGCGGGTGCTCAAGGATGCCCAGGCAATGATCCAACGCATCACC
GCCCTGCGCCAAAGGCTCAACGCCGCTGGTGCTGCATGCACACATGGACA
CGGCGTGCCAGGCAGGCAGGCTGAAGCACCCGTGGTTGCCACAACTCCAG
TCCCGGGAAAAAACGACGAACCCGTGGGTGGGGAGCCGGCCACCCCGAGC
AACGCCTGTGAAACCAAAGCGGGGTTACAGACTGACACGGGCGGGTGTCA
AACTGTATCTCCTGTGAAGCCAGCGTGAGATGCCCAGGCAATGATCCAAC
GCATCACCGCCCTGCGCCAAAGGCTCAACGCCGCTGGTGCTGCATGCACA
CATGGACACGGCGTGCCAGGCAGGCAGGCTGAAGCACCCGTGGTTGCCAC
AACTCCAGTCCCGGGAAAAAACGACGAACCCGTGGGTGGGGAGCCGGCCA
CCCCGAGCAACGCCTGTGAAACCAAAGCGGGGTTACAGACTGACACGGGC
GGGTGTCAAACTGTATCTCCTGTGAAGCCAGCGTGA back to top
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