mRNA_S-ischiensis_contig14.3415.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig14.3415.1
Unique NamemRNA_S-ischiensis_contig14.3415.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig14.3415.1 vs. uniprot
Match: A0A6H5JT44_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT44_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.400e-11
Identity = 50/140 (35.71%), Postives = 74/140 (52.86%), Query Frame = 1 
Query:    1 VEQRVTKLRELLQGGDVAAALSRSPALLLEDVSFTVRPRFLRLVFALRRMLTRE------QVTSMVLRCPQILLADVRGGVVPLVQFLSLVSDDLEDLGRRLLRDPYLLLVGLGPLSRVSFTLQLFRDGTMTASVPLQGA 402
            VE +V +LRELL G  VA  +S +P LLL DV   +RPR  RLV AL  +   +                           VP +Q++   + D ++L  RL RDP LL+VG+GPL+R+ +TL+  R+G+ + ++   GA
Sbjct:  534 VEDKVEELRELLPGERVAGVVSVAPDLLLNDVQTCLRPRMTRLVAALTTVKQFQGXXXXXXXXXXXXXXXXXXXXXXXXXXVPSLQYMLQSTSDHDELATRLFRDPSLLVVGVGPLARLQYTLEQHRNGSASIALGNLGA 673
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JT44_9PHAE2.400e-1135.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig14contigS-ischiensis_contig14:2678640..2680659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue2.2e-10
Seed eggNOG ortholog2880.D7FSD0
EggNOG free text desc.mTERF
EggNOG OGs2F0DX@1,2T1JT@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size497
Cds size495
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig14.3415.1prot_S-ischiensis_contig14.3415.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig14 2678640..2680659 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815727.5199323-CDS-S-ischiensis_contig14:2678639..26788041622815727.5199323-CDS-S-ischiensis_contig14:2678639..2678804Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2678640..2678804 +
1695739878.8418963-CDS-S-ischiensis_contig14:2678639..26788041695739878.8418963-CDS-S-ischiensis_contig14:2678639..2678804Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2678640..2678804 +
1622815727.529805-CDS-S-ischiensis_contig14:2679449..26795961622815727.529805-CDS-S-ischiensis_contig14:2679449..2679596Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2679450..2679596 +
1695739878.8559947-CDS-S-ischiensis_contig14:2679449..26795961695739878.8559947-CDS-S-ischiensis_contig14:2679449..2679596Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2679450..2679596 +
1622815727.5391905-CDS-S-ischiensis_contig14:2680476..26806591622815727.5391905-CDS-S-ischiensis_contig14:2680476..2680659Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2680477..2680659 +
1695739878.8659976-CDS-S-ischiensis_contig14:2680476..26806591695739878.8659976-CDS-S-ischiensis_contig14:2680476..2680659Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2680477..2680659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig14.3415.1

>prot_S-ischiensis_contig14.3415.1 ID=prot_S-ischiensis_contig14.3415.1|Name=mRNA_S-ischiensis_contig14.3415.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=165bp
VEQRVTKLRELLQGGDVAAALSRSPALLLEDVSFTVRPRFLRLVFALRRM
LTREQVTSMVLRCPQILLADVRGGVVPLVQFLSLVSDDLEDLGRRLLRDP
YLLLVGLGPLSRVSFTLQLFRDGTMTASVPLQGARTENGTGNATAEAIAA
ATTAAAAGAPPAATA
back to top

mRNA from alignment at S-ischiensis_contig14:2678640..2680659+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig14.3415.1 ID=mRNA_S-ischiensis_contig14.3415.1|Name=mRNA_S-ischiensis_contig14.3415.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2020bp|location=Sequence derived from alignment at S-ischiensis_contig14:2678640..2680659+ (Schizocladia ischiensis KU_0333)
GTCGAGCAGCGTGTGACCAAACTTCGGGAGCTGCTTCAGGGCGGGGACGT
GGCCGCGGCCCTCTCCCGCTCCCCCGCGCTTCTGCTGGAGGATGTGTCCT
TCACCGTGCGGCCGCGCTTCCTGCGCCTGGTGTTTGCGCTGAGGCGCATG
CTCACCCGGGAGCAGGTGTGCGTGTGATTCATATAAATTGTATGAGCAAC
GAGGTACAATCGCACGTCTGTGAGATTGAGTGTTCTCGTATTACAGTAGT
GGCTATCAGGTGCGCCTTGGGGCAGGCAGGTGTTTGTTTGCTGCCGTGTC
TGCACTGGTCGCTTCTTGTTCTTTTTCTTGTTCTGCTTGTCGTCGTTGTT
ATTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTACCTCTTCCTTCTTCTCA
TTCGTCTTCTTCTTCTTCTTCTTCTTCCTCTGTGTCTTCTTTACTTTCCC
GCATTAATCTCGCACCCTCACTTCCTCCCCTCCCTCCTCTTCCTCCCTCT
CCCTCCCCACCCCCGCTCCTCCTCCTGCTGCACCTCCCCTTTCTTCTGCA
CCCCCTCCTCCCTCCCCCTCTACTGCCGGCCCACACGTGCTCCCCCCTCC
TCCTCCTCCTTCACCACCATCCCCCCCCCTCCTCCTCCCCCTAACCTTCC
CCATTCCCCTCTTTCCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACC
ACCACCCCCCCCCCCCCCCTCCTCCTCCTCCTCTCCTTCCCCACCCCCCT
CTTCCCCTCCTCCTCCTCCTCCTCCTCCTCCACGTGCTCCTCCCACCACC
CTTCCTGCAGGTGACGAGCATGGTGCTCCGCTGCCCGCAGATCCTCCTGG
CGGACGTGAGGGGGGGCGTGGTCCCGCTCGTGCAGTTTCTCTCCCTGGTG
TCGGACGACCTGGAAGACCTGGGCAGGCGTCTGTTGAGGGACCCATATCT
GCTCTTGGTGGGTCTTTTGCGGAGTGGACAAATGTGCCGAGGGCGTGAAC
CAAGAAATATTATGTGTGCCGAGGACGTTGGCATCAGACGTGCGGACCCC
TGGCCGAAAACTGAGGGTTACGGTTGTCTATTGTACTCGGTGATTGACGA
ACAATCTCCTTCACTACTTGGGTGACTGAACTTCAGTCTCCACACCACCA
CCACCACCACCACCACCACCATAACCCCCACTGCCACCAGGACCACCACC
ACTGCTACTACAACCACCACCACCACCACCTTAACCCCCACTGCCACCAC
TACCACCTCCACTGCAGCTACCACCACCACCACCACCACCACCACTGCCG
CCACCACCACCACCACCACCACCACCACCACCACTGTCACCACCACCACC
ACCAAAACCCCCACTACCACCACAACCCCCACTGCCACCACCACCACCAC
CACTGCAGCTACAACCACCACCACCACCACCGCCACCACCGCCACCGCCA
CCGCCACCACCCCCACCACCACTACCACCACCACCACCGCCACAACCATA
ACCCCCACTGCCACCACTACCACCACCACTGCAGCTATAACCACCACCAC
CACTACTGCCACCACCATCGCCCCCACCAAGACCACCACCACCACCACCA
TACCCCCCACTGCCACCACCACCACCACCACTGCAGCTACAACCACCACC
ACCACCATCACTCTCAAATGAACAAACTGAAATTACGAGAACAGTCAATC
GCACACACCTGCGATTGTACCTTGTTACTATTTATGTGAATCACCACCAT
CACTACCACCACCACCACCACCACCACCGCCATCGCCCCCGCCAAGACCA
CCACCACCGCACCGCCACCCCCCCCCCCCCCCCGCAGGTGGGACTGGGCC
CGCTTTCCCGCGTCAGTTTCACTCTGCAGCTGTTCCGCGACGGGACAATG
ACAGCCTCCGTCCCGTTGCAGGGGGCCCGCACCGAGAACGGCACTGGTAA
CGCTACTGCCGAGGCTATCGCTGCGGCCACCACCGCCGCTGCAGCCGGTG
CCCCCCCCGCCGCCACCGCC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig14:2678640..2680659+

>mRNA_S-ischiensis_contig14.3415.1 ID=mRNA_S-ischiensis_contig14.3415.1|Name=mRNA_S-ischiensis_contig14.3415.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=990bp|location=Sequence derived from alignment at S-ischiensis_contig14:2678640..2680659+ (Schizocladia ischiensis KU_0333)
GTCGAGCAGCGTGTGACCAAACTTCGGGAGCTGCTTCAGGGCGGGGACGT
GGCCGCGGCCCTCTCCCGCTCCCCCGCGCTTCTGCTGGAGGATGTGTCCT
TCACCGTGCGGCCGCGCTTCCTGCGCCTGGTGTTTGCGCTGAGGCGCATG
CTCACCCGGGAGCAGGTCGAGCAGCGTGTGACCAAACTTCGGGAGCTGCT
TCAGGGCGGGGACGTGGCCGCGGCCCTCTCCCGCTCCCCCGCGCTTCTGC
TGGAGGATGTGTCCTTCACCGTGCGGCCGCGCTTCCTGCGCCTGGTGTTT
GCGCTGAGGCGCATGCTCACCCGGGAGCAGGTGACGAGCATGGTGCTCCG
CTGCCCGCAGATCCTCCTGGCGGACGTGAGGGGGGGCGTGGTCCCGCTCG
TGCAGTTTCTCTCCCTGGTGTCGGACGACCTGGAAGACCTGGGCAGGCGT
CTGTTGAGGGACCCATATCTGCTCTTGGTGACGAGCATGGTGCTCCGCTG
CCCGCAGATCCTCCTGGCGGACGTGAGGGGGGGCGTGGTCCCGCTCGTGC
AGTTTCTCTCCCTGGTGTCGGACGACCTGGAAGACCTGGGCAGGCGTCTG
TTGAGGGACCCATATCTGCTCTTGGTGGGACTGGGCCCGCTTTCCCGCGT
CAGTTTCACTCTGCAGCTGTTCCGCGACGGGACAATGACAGCCTCCGTCC
CGTTGCAGGGGGCCCGCACCGAGAACGGCACTGGTAACGCTACTGCCGAG
GCTATCGCTGCGGCCACCACCGCCGCTGCAGCCGGTGCCCCCCCCGCCGC
CACCGCCGTGGGACTGGGCCCGCTTTCCCGCGTCAGTTTCACTCTGCAGC
TGTTCCGCGACGGGACAATGACAGCCTCCGTCCCGTTGCAGGGGGCCCGC
ACCGAGAACGGCACTGGTAACGCTACTGCCGAGGCTATCGCTGCGGCCAC
CACCGCCGCTGCAGCCGGTGCCCCCCCCGCCGCCACCGCC
back to top