mRNA_S-ischiensis_contig14.3395.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig14.3395.1
Unique NamemRNA_S-ischiensis_contig14.3395.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig14contigS-ischiensis_contig14:2462356..2466659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size535
Cds size531
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig14.3395.1prot_S-ischiensis_contig14.3395.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig14 2462358..2466659 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815725.8803058-CDS-S-ischiensis_contig14:2462357..24625641622815725.8803058-CDS-S-ischiensis_contig14:2462357..2462564Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2462358..2462564 -
1695739877.7362223-CDS-S-ischiensis_contig14:2462357..24625641695739877.7362223-CDS-S-ischiensis_contig14:2462357..2462564Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2462358..2462564 -
1622815725.8913147-CDS-S-ischiensis_contig14:2464422..24645351622815725.8913147-CDS-S-ischiensis_contig14:2464422..2464535Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2464423..2464535 -
1695739877.7476552-CDS-S-ischiensis_contig14:2464422..24645351695739877.7476552-CDS-S-ischiensis_contig14:2464422..2464535Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2464423..2464535 -
1622815725.9043348-CDS-S-ischiensis_contig14:2465840..24659521622815725.9043348-CDS-S-ischiensis_contig14:2465840..2465952Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2465841..2465952 -
1695739877.7558131-CDS-S-ischiensis_contig14:2465840..24659521695739877.7558131-CDS-S-ischiensis_contig14:2465840..2465952Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2465841..2465952 -
1622815725.9141486-CDS-S-ischiensis_contig14:2466560..24666591622815725.9141486-CDS-S-ischiensis_contig14:2466560..2466659Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2466561..2466659 -
1695739877.7642424-CDS-S-ischiensis_contig14:2466560..24666591695739877.7642424-CDS-S-ischiensis_contig14:2466560..2466659Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2466561..2466659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig14.3395.1

>prot_S-ischiensis_contig14.3395.1 ID=prot_S-ischiensis_contig14.3395.1|Name=mRNA_S-ischiensis_contig14.3395.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=177bp
QRGVGSGAGPQRKTGGGFGGGKRRMKVLCHHIQGKVLEVDSNACKSSEKK
TGTLHQNKVTCLCGCAEEMSGYDFVVHGGGRARDQQGGYPFNFCRLVDTQ
ENVGLHMKHCETSVYLCDTCDLWERPDAPMAHCLQCGRAVHASPECAHRT
EPHAVSSAPTPPAHSLPGGLASAAEGP
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mRNA from alignment at S-ischiensis_contig14:2462356..2466659-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig14.3395.1 ID=mRNA_S-ischiensis_contig14.3395.1|Name=mRNA_S-ischiensis_contig14.3395.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4304bp|location=Sequence derived from alignment at S-ischiensis_contig14:2462356..2466659- (Schizocladia ischiensis KU_0333)
CAGCGCGGCGTGGGCAGTGGAGCCGGGCCGCAGAGGAAGACCGGGGGGGG
CTTCGGCGGGGGCAAGAGGCGCATGAAGGTTCTGTGCCATCACATACAGG
CAAGACGCTAGTGGGTAGGTATTGATTGTTGATCTCTGACCACAGATAAC
CACTGTTATCGTTGGAGAGATTTGCCCCACGGGACGATTTTCGGGGGAGT
ATTTCTCGCCGAATGGGTCCCAAATTGTCCCGAACTTCACCAGAAATGTT
CATCCAGGGCCCGAGGGAGATTTTCCGAGTTTTCCCGCGCGAATCCGGCC
AGTATTCGGCAAGAAAAATCTCCCGAAAATTGGCATGGGGGGGCAAGATC
TCTCCGATGATTACGGTACACTTGCAACCGGGCGGGGCTTTGGGGGGGGC
AAGAGGCACATGAAGGTCCTGTGCCACCACATTCAGGCAAGGTGGGGGGT
GGGGGGTGGGGGGTCCGGGGGAGGCAGGCGGGGCGATTGTCGGTTGTTAG
TTAGTGGGTGAATTTTGATTGAAATCTGATTATTGATTGTTGACATTGAT
TGTTGATATCCGACCTCAGGGCAAGGTTCTGGAGGTTGACAACGCGTACA
AGTCCTCCAGGACAAAGACGGGGACCCTCCATCATTGGTTGTTGATTTCT
GATTATTGATTATTGATATTGATTATTGATTGTGACCGCTTGTTTTGGTG
ATTGCAGGGCAAGGTTCTGGAGGTTGACTCCAATGCGTGCAAGTCCTCCG
AGAAAAAGACGGGGACCCTCCATCAGAACAAGGTCACCTGCCTCTGCGGC
TGCGCCGAGGAGATGTCTGGTGAGCGATATGATGTGATATGATGTGATGT
GATTTTCACTCCGAAACACGGTGGTGATTCATATACGAAGTAAATTGCAA
CGAGGTACAATCGCGGTATTTTCAGGTTAGCAGCCAAGGATTACTTCTGG
TGAGCGATGTGATGTGATGTGATGTGATTTTCACTCTGGAGCACGGCGGT
GTTTTTCAGGTTAGCAGCACATCGCGGTGTACGGTAGTTGTTGCCTGGTG
ATGTGCCTAGCGATGTGATGTGATTTTCGCTCTGAAACATGGTGTTTTCA
GGTTGGCAGCAACATCGCGGTGTAGTTGTTGCCTGGTGAGCGATGTGATG
TGATGTGATATGATCTGCACTCTAATTCGCTGTCACTTGACATCACACTG
GATGTGATGTGAAGTGATGTTATGTGCTCTGCACTCTGCGACACAGCAGT
GATTCGGATAAATATTCGCGAACGAAAGAAGGGCCATGTTCCCTGCGGGT
GAAAAGAAGGGCTTCTTGCGAGGTCCCCACCTTAGGTTGTTGGGACGGGG
CATGGAACTCGCGTACCATCATAAAAATTAAAAAAGGGCTTCACCCCCCA
CTGCCTCCTCCCCTTTCCCCTTTGTTTCTTTATGTTTTCCCTGCGAGTGA
AGGCGGGGGAAGGACGGGCTTCCTTGGTGTTGGGGCCCGGAACCCGCAAA
AACAGGGTTACCTCTATTTCCCACTCGCTTCTTTTCTTTCGACGCGAAGG
GGTCAATTCTTTCTGGTGAGGTCCCCAGTTTCGATGTGATGTGATGTGAT
GTGATGTAGCACTACAGTGTACTAGAGCACGCACCACATCACATCCCATC
ACGTCACACTAGCGAGTGAAAGAAGGGTTAACGTAGCTCTTGTGGTGAGG
TCCCCAGTTTGGGCCGGGGCCCGGAACTCGTGTGCCACGGAGAGTTATCG
ATACTAAGTTGTCAAAAATAGTACTGACGAATGCACAATAGCATCTCACG
CGCGTGGAAGAACTCACATGGTTTCTTGTTTTTTTTTCTCTGTGGAACGC
GTGGTCAATGGCCATATGGCTACGGCAGGCAACTCATGAGTGCACCCCGC
TTGGGGAGTTGACCCTATCTTTCGAATGTTGTGATCATTGTGAACTCTTA
ATTCACTCATGAATTGACTCCGCAGGGTACGACTTTGTGGTTCACGGCGG
AGGTCGGGCCAGGGACCAGCAGGGGGGGTACCCGTTCATAAATGGGATAA
CCACTAATGCGATAGCACTCAATCTCACACACGTGCCATTGTACCTCGTT
GCAATTTCATATTAATCTCGGCAGGGTACGACTTTGTGGTTCACGGCGGA
GGTCGGGCCAGAGACCAGCAAGGGGGCTACCCTTTCAACTTCTGCCGATT
GGTGGACACACAGGAGAACGTGGGACTACACATGAAGGTGATGTCATATG
ATGTGACGTATCCTCTTATTTGCTGTAGTTACTGGTGTGATGTAATGTGA
TGTGAGGTGATGTGATGTGATGTACGAAGTATACTCTAATTTACTGTAGT
TGCTGATGTATGTAATGTGATGTGATGTATACTCTAATTTACTGTAGCTA
CTGATGTGATGTGATGTATACTCTAGTTTACTGTAGTTGCTGATGCGATG
TGATGTGATGTATGCTCTAATTTACTGTAGCTACTGATGCGATGTAATGT
GATGTGATGTGATGTATACTCTCTGATTTACTGCAGTTGCTGATGTGATT
TGATGTATACTCTGATTTATTGCAGTTACTGATGTGATGTGATGTGTGCT
CTAATTTACTGCAGTTTTGAAACCACAGCACATCAATACCACGCGTTGTT
TTGGCGTCCCGCCGTCCTCAATAGAGGCTTTTAAGTACTTGGAAGTAGGT
TGGGGGGTTAACGGGTACGAGTACGCTGCTGCGACTTGGTGGGGGGCGCG
ACGGAGAGGGTGGGGATGCCAGTGCATTTCAAAGACGCTGTCAACTGCAC
CGGGGTTGGGTTTGGACCAGGCTAGGGCTAGTGTGCTTTGAGCTCTGGGG
CAGTTCTCAACGCAAAACCGACTCTGGGCTTCCATTTCTTCCATTCTTCC
ATTAAATTGGAAGAGGGGCCGCAAAATTAGGGTTGGGACCGGGCTACCTC
CACGTCAAAGGTGGGGGTAGCCAGAAGGTAGAGTTGTGAACTGGCGAGGC
CCTCCAGTTTAAGTGTTAGCCCGTCGTGTGACCGGTCGGTTTTAACCGGT
CGGTAGCGGCTACCGTATTGCCACAATCAAAGAATAGCGGGCGTATCACG
CGCTCTGGCTACACGATTGGCCACCGGTCGGTTAACCGTTTAAACCACTT
AACTGGTACCGACCGGTAAAAACCGGCACCAGTTCACAACACTACCAGAA
GGTGATGTCCCCCACGCGTGCTAGCACTTCGTGTGCGTCCCCGAGGAGCT
ACCTAGCCCGAGCCCGCCCCAACCCCAGCCCTAGCCCCACACTCCACCCA
CTAATACGAGAACACTCAATTCTGAAATGGGATAGCCACGAAACACAAGA
ACATGCCATAAACATAATTTAACAAGACTCAATCTCACACACGTGCGATT
GTACGCCGTTACTTCCAAGTACAAATCATTTGAGTGGTAAACAAGAGGCG
AGTTCCAGGCCCCATGCCAAAAGGCTCGCCCAGACACGGGACTCAACGAA
GCCCGTCCTTCCCTCGCAGGGCAAAAAGAAAACATAAATAAAGAAGGAAA
GGGAAGGGGCGGGGAAGGGGAGTCTCTTGTGCTCACAGTGGGGCATGAGG
GTGGTGCAGGCGGGGGGGAAGCCGCACGCGAACACCGAGAGCATGACGTA
CCTGGGCGGGTGCAAGAAGAGGAGGCGTGAGCAAGTGCCACAGTGTGTAC
CGCGCACGAACCACGTGACCACAAAGAGAGCCGACCGCAGATGGCACAAA
CAAACTAACAATGGTGTGGCAAGCACCAGGAGGACGCAACAAACATAACA
AAGTTGTACCCCTACCCATACCCCCCCCCCTCCCTACTCGCGCCTTCTCC
TCAGCACTGCGAGACGTCGGTGTACCGGTGTGACACCTGTGACCTCTGTA
ACCGCACAAGAACCTCAAAACAAACATTACTAACTTGCACCCCTACCCCC
ACCCCCCCTACCCGCCCTTCTCCTCAGCACTGCGAGACGTCGGTGTGCCT
GTGCGACACCTGCGACCTCTGTAGCTGCACAAGAACCTCAACATCACGAG
CTTGTGCTTACCCCTACCCCTACCCCTATTCCCCCCCCCCCTCAGCACTG
CGAGACGTCGGTGTACCTGTGCGACACCTGCGACCTCTGGGAGCGCCCGG
ACGCCCCCATGGCGCACTGCCTCCAGTGCGGCCGGGCCGTGCACGCATCC
CCAGAGTGTGCACACCGAACAGAGCCACATGCTGTATCGAGTGCGCCGAC
GCCCCCCGCCCACAGTCTGCCTGGGGGGTTGGCGAGCGCTGCAGAGGGGC
CGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig14:2462356..2466659-

>mRNA_S-ischiensis_contig14.3395.1 ID=mRNA_S-ischiensis_contig14.3395.1|Name=mRNA_S-ischiensis_contig14.3395.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1062bp|location=Sequence derived from alignment at S-ischiensis_contig14:2462356..2466659- (Schizocladia ischiensis KU_0333)
CAGCGCGGCGTGGGCAGTGGAGCCGGGCCGCAGAGGAAGACCGGGGGGGG
CTTCGGCGGGGGCAAGAGGCGCATGAAGGTTCTGTGCCATCACATACAGC
AGCGCGGCGTGGGCAGTGGAGCCGGGCCGCAGAGGAAGACCGGGGGGGGC
TTCGGCGGGGGCAAGAGGCGCATGAAGGTTCTGTGCCATCACATACAGGG
CAAGGTTCTGGAGGTTGACTCCAATGCGTGCAAGTCCTCCGAGAAAAAGA
CGGGGACCCTCCATCAGAACAAGGTCACCTGCCTCTGCGGCTGCGCCGAG
GAGATGTCTGGGCAAGGTTCTGGAGGTTGACTCCAATGCGTGCAAGTCCT
CCGAGAAAAAGACGGGGACCCTCCATCAGAACAAGGTCACCTGCCTCTGC
GGCTGCGCCGAGGAGATGTCTGGGTACGACTTTGTGGTTCACGGCGGAGG
TCGGGCCAGAGACCAGCAAGGGGGCTACCCTTTCAACTTCTGCCGATTGG
TGGACACACAGGAGAACGTGGGACTACACATGAAGGGTACGACTTTGTGG
TTCACGGCGGAGGTCGGGCCAGAGACCAGCAAGGGGGCTACCCTTTCAAC
TTCTGCCGATTGGTGGACACACAGGAGAACGTGGGACTACACATGAAGCA
CTGCGAGACGTCGGTGTACCTGTGCGACACCTGCGACCTCTGGGAGCGCC
CGGACGCCCCCATGGCGCACTGCCTCCAGTGCGGCCGGGCCGTGCACGCA
TCCCCAGAGTGTGCACACCGAACAGAGCCACATGCTGTATCGAGTGCGCC
GACGCCCCCCGCCCACAGTCTGCCTGGGGGGTTGGCGAGCGCTGCAGAGG
GGCCGCACTGCGAGACGTCGGTGTACCTGTGCGACACCTGCGACCTCTGG
GAGCGCCCGGACGCCCCCATGGCGCACTGCCTCCAGTGCGGCCGGGCCGT
GCACGCATCCCCAGAGTGTGCACACCGAACAGAGCCACATGCTGTATCGA
GTGCGCCGACGCCCCCCGCCCACAGTCTGCCTGGGGGGTTGGCGAGCGCT
GCAGAGGGGCCG
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