mRNA_S-ischiensis_contig14.3387.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig14.3387.1
Unique NamemRNA_S-ischiensis_contig14.3387.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig14.3387.1 vs. uniprot
Match: D7FJW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJW1_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 8.950e-16
Identity = 57/118 (48.31%), Postives = 74/118 (62.71%), Query Frame = 1 
Query:  151 LRSERELQAEIMRLLQAMKVLGDENTSLMRENAGADQVRRENAAVWAEMRRFQAKYQERFLLLRKSLDEVARRNPEVAAQGIRGTPQHSEGGGHRHPHATVEQLKEEVRRLQQANKQM 504
            +R E   Q EIMRLL  +K LGDEN SLM+E    D+VR+E+ A+  EM+RFQ KY ERF LL+K+LDEV R  P++AA G   T   + G     P  T E    EV+RL Q N+++
Sbjct:  389 VREEEAQQGEIMRLLTCLKTLGDENVSLMKECEDRDKVRQESEAIREEMKRFQLKYHERFTLLKKTLDEVMRSYPQLAAPG---TASATGGASTSDPAKTTE----EVQRLTQTNRKL 499
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BLAST of mRNA_S-ischiensis_contig14.3387.1 vs. uniprot
Match: A0A6H5KVB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVB2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 9.850e-14
Identity = 58/124 (46.77%), Postives = 75/124 (60.48%), Query Frame = 1 
Query:  151 LRSERELQAEIMRLLQAMKVLGDENTSLMRENAGADQ------VRRENAAVWAEMRRFQAKYQERFLLLRKSLDEVARRNPEVAAQGIRGTPQHSEGGGHRHPHATVEQLKEEVRRLQQANKQM 504
            +R E   Q EIMRLL  +K LGDEN SLM+E    D+      VR+E+ A+  EM+RFQ KY ERF LL+K+LDEV R  P++AA G   T   + G     P  TVE    EV+RL Q N+++
Sbjct:  252 VREEEAQQGEIMRLLTCLKTLGDENVSLMKECEERDKASASTAVRQESEAIREEMKRFQLKYHERFTLLKKTLDEVMRSYPQLAAPG---TASAAGGTSTSDPAKTVE----EVQRLTQTNRKL 368
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJW1_ECTSI8.950e-1648.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVB2_9PHAE9.850e-1446.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig14contigS-ischiensis_contig14:2386331..2389723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_000670.1
Exons5
Model size966
Cds size966
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig14.3387.1prot_S-ischiensis_contig14.3387.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig14 2386331..2389723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815703.447337-CDS-S-ischiensis_contig14:2386330..23864741622815703.447337-CDS-S-ischiensis_contig14:2386330..2386474Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2386331..2386474 +
1695739862.7432323-CDS-S-ischiensis_contig14:2386330..23864741695739862.7432323-CDS-S-ischiensis_contig14:2386330..2386474Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2386331..2386474 +
1622815703.4603157-CDS-S-ischiensis_contig14:2387141..23873231622815703.4603157-CDS-S-ischiensis_contig14:2387141..2387323Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2387142..2387323 +
1695739862.752405-CDS-S-ischiensis_contig14:2387141..23873231695739862.752405-CDS-S-ischiensis_contig14:2387141..2387323Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2387142..2387323 +
1622815703.4741576-CDS-S-ischiensis_contig14:2387802..23879831622815703.4741576-CDS-S-ischiensis_contig14:2387802..2387983Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2387803..2387983 +
1695739862.7618973-CDS-S-ischiensis_contig14:2387802..23879831695739862.7618973-CDS-S-ischiensis_contig14:2387802..2387983Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2387803..2387983 +
1622815703.4913132-CDS-S-ischiensis_contig14:2389088..23893371622815703.4913132-CDS-S-ischiensis_contig14:2389088..2389337Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2389089..2389337 +
1695739862.7733374-CDS-S-ischiensis_contig14:2389088..23893371695739862.7733374-CDS-S-ischiensis_contig14:2389088..2389337Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2389089..2389337 +
1622815703.5079646-CDS-S-ischiensis_contig14:2389513..23897231622815703.5079646-CDS-S-ischiensis_contig14:2389513..2389723Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2389514..2389723 +
1695739862.7844195-CDS-S-ischiensis_contig14:2389513..23897231695739862.7844195-CDS-S-ischiensis_contig14:2389513..2389723Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2389514..2389723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig14.3387.1

>prot_S-ischiensis_contig14.3387.1 ID=prot_S-ischiensis_contig14.3387.1|Name=mRNA_S-ischiensis_contig14.3387.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=322bp
QTTEVAGPGITVAAQDTVAAPVAAVTTGAGSLGAEAAAGQPPPPAPLQVQ
LRSERELQAEIMRLLQAMKVLGDENTSLMRENAGADQVRRENAAVWAEMR
RFQAKYQERFLLLRKSLDEVARRNPEVAAQGIRGTPQHSEGGGHRHPHAT
VEQLKEEVRRLQQANKQMQGGLLEGREAKKRLLAYEQWYAKFKADVLRQR
QQQQLKQHQQQQPQPQPHPPTPQQQQQQQQQQQQPPPPLKHQQQRRQQQQ
QQPHQQQQQRRQSRGSPELHEGGASSASPGPSPGHGGAAGTAGQGMMRPP
GQEPPGGGGPAPAAGVGVAPGS
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mRNA from alignment at S-ischiensis_contig14:2386331..2389723+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig14.3387.1 ID=mRNA_S-ischiensis_contig14.3387.1|Name=mRNA_S-ischiensis_contig14.3387.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3393bp|location=Sequence derived from alignment at S-ischiensis_contig14:2386331..2389723+ (Schizocladia ischiensis KU_0333)
CAGACGACAGAGGTGGCGGGCCCCGGCATCACGGTTGCCGCACAGGATAC
CGTGGCGGCACCTGTTGCGGCGGTGACCACGGGGGCGGGTAGCTTGGGAG
CGGAGGCGGCGGCCGGCCAGCCCCCGCCACCCGCGCCGCTGCAGGTGCGA
CTCTGGTGCTGTGGTGTGGACTTGGGTGTGATGTTGGCGGTACTAGGTGG
TGAACCCTCTTTTTGGTTTCTTTTCTTGATTTTTGTGCCCTGCGGGTGAA
AAGAAGGGCTTCTGGCGAGGTCCCCACCTTGGTTGTTGGGACGGGGCCCG
GAACTCGCACGCCATCAAAACATATAGAGGGGTTGTAGCGAGGTACAATT
GCACGTGTGTGAGATTGAGCGTTCACGTACTAGTGGTTATCCCATGTAAG
AATTGAGTGTTCTCGCAGTAGTGATTATCACATCAATGAACTGAAAACTG
CCTATGTATATTCTGTTGTGTGCTCAATTGGACACTGGCCGTCATTACCA
AGTACCTACTTCCCAAGTACGCACTTACAAGTACTTTCCACATCACACAC
ACGTACCGGGACCGCTGCCGCCAGGGTTGGCACTTAGCCCCTAAGTGGTG
CCCTTTTGGGCCCTTAAGTAGATGCGATTAGGGGTAGTTAGACCTACTAA
AAGCGAAGGCCAGCTAGGCCATAGTTAGCCTCAGGTGCCAACCCTGACAC
TGGCCGTCATTACCAAGTACTTCCCAAGCACTTACAAGTACTTGCCACAT
CACACACACACACGCACACACACACACACAACACACACGCCGCAACCGCC
GCCGCCGCCAGGTGCAGCTCCGGTCGGAGCGTGAGCTGCAGGCGGAGATA
ATGCGCCTGCTGCAGGCAATGAAGGTCTTGGGGGACGAAAACACCTCCCT
GATGCGGGAGAACGCCGGCGCGGACCAGGTCCGGAGGGAGAACGCCGCCG
TGTGGGCGGAGATGAGGAGGTTCCAGGCCAAGTACCAGGAGAGGTGAGAG
TCACACCGAACAGAGGGAGGGGGGAGATGAGGGCGGAGTTGAGACGAGAA
GGTTCCTGCTTCTTGTACAGTTGTGGAGCGGAAGCACCATGCCTCCCCGC
CCACCCCCCTCCTCCTCCACCTGCGCCTCGCCCTCCCGCTCCCTCTCCCC
GTCCCCCTCCTGCCTATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTC
CTCTTCCCTCTCCTCCTCCTCCCCCTCCCCCTCCCCCTCCTCCTCCTCTT
CCCCCTCCTCCTCCTCCTCCTCCTCCCCTCCCCCTCCCCCTCCCCCTCCC
CCCCCCCCCCCCCATCCCGCTCCCTCTCCCTCCCCTCCCCCTCCTCCTCC
TCCTCCTCCTCGCCCTCCCCCCCCCTCGCCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCCCCTCCCCCTCCCCGTCCTCCTCCCCCTCCGCC
GCCGCCGCCACCGCCTGCACAGGTTCTTGCTCCTGAGGAAGTCGCTGGAC
GAGGTGGCTCGCAGGAACCCGGAGGTTGCGGCGCAGGGCATCAGGGGGAC
CCCGCAGCACTCTGAGGGGGGGGGTCACCGCCATCCCCACGCAACAGTGG
AACAGCTCAAGGAGGAAGTGCGGCGCCTGCAGCAGGCCAACAAGCAGATG
CAGGTGATTCATATAAATTGTAACGATTTTGTGCCTGCGAGTCAAGGCCT
TCTGGTGAGGTCCCCGCCTGAGGTTGTTGGGACGGGGCCCGGAACTCGCA
TCTCTCACAATACCTTCATATGAATTGTAGCGAGGTACAATCGCGCGTGT
GTGAGATTGAGTGGCTATCCTATTTCAGAATTGGGTGTTCTCGTAGTAGT
GATGCAGGTGATGTAGGCAGGCATACAGTATGCATGGAAGTGCATGTACG
TACTCTGTTTCACTTGCAGGGTGATTTGCCGAAGCGTTCGCGCCCAAGCG
CACCGCTTTTGGGCTCAGCTGTGCAAGCCAATGTACGAGTAGTGCGGCAG
GCTGCCGTGCTTGGTACTTGATTTTATCGCGGAGGCAACGTTGCACGAAC
TGACAGTGAAACACCTACGCCTGTCAACGTCAAGCGGTGTCCCCCTTGGA
CGTGATGTGGTGTGCTGACATGTAGTGCGATGTGTACATGATGTATACTT
CGAAGTATGTACGAAGTATGTACGAAGTACTTTGTATGTACTCATTGGCT
TGTCTTGGGACATAGCCTTGCGTGCAATGCCGACAGCCCTACGTCGAAAC
TTGGGGTTTGCCCTCCGACAGCAGTAGCTATTTGGCCGTGGACTCTGCTC
TTTAGAGTACACGCCATATCGAGCCGCATGATGTGCGGGTGTGAGGCGAT
GCCAAACCCCATAGCGTTACTTGAACTCGAGTACTCGAGTACAGTACGGT
GATTGAGTGCACATGGCATCGAATCGCGACGGTTGAACACGCGCCTGCCC
GACCCGTCCGCCACACGCCTCCCTGCGCAGGGTTGGCACTTAACCCCTAT
GTGGTGCCGTTGTAGACGCTTAGTTAAGGGTGATTAGGGGCAATTAGACC
TAAGATGAAGTCTAATTGGACCCTTATTAGCCTCTAAGTGCCAACCCTAT
CCCTGCGGTGATGCAGAGGGCTCTGCTAGAGGGCCGGGAGGCGAAGAAGC
GCCCGCTGGCATACGAGCAGTGGTACATAGAGTGTACATGGCATCGGATC
GCAACAGTTGAACACGCGCCTTTACCCGTACACCACATGCGTCTCTGCGA
TATCGCAGGGGGGTCTGCTAGAGGGCCGGGAGGCGAAGAAGCGCCTGCTG
GCCTACGAGCAGTGGTACGCCAAGTTCAAGGCCGACGTGTTGCGCCAGCG
CCAGCAGCAGCAACTCAAGCAGCACCAACAACAACAGCCGCAGCCACAGC
CACACCCGCCAACCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCCGCCGCCACCACTCAAGCATCAGCAGCAGCGGCGGCAACAACAACA
ACAACAGGCAAGTCGGTCGAGCTGTGAACCGGCGTGGCCAGTCGTCGGTT
GAGATGGTACATTGTCGGCAGAGTGCCGTGCCGGTATTTGTTCCACGTGT
TACTCCCCTGTGGCGGCGTCGAGCCCGGCCTGACGCCGCCCACCCGTCCC
GTCTGCCCCGCTCACGAACAACACCAACCGCAGCCGCACCAGCAACAACA
ACAGCGGCGGCAGTCGAGAGGGTCCCCGGAGCTCCATGAGGGTGGTGCAT
CATCGGCCAGCCCAGGCCCGAGCCCGGGCCATGGCGGCGCCGCCGGGACC
GCGGGGCAGGGAATGATGAGACCTCCAGGGCAGGAGCCGCCAGGGGGCGG
CGGCCCGGCGCCGGCGGCGGGGGTTGGGGTTGCTCCAGGCTCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig14:2386331..2389723+

>mRNA_S-ischiensis_contig14.3387.1 ID=mRNA_S-ischiensis_contig14.3387.1|Name=mRNA_S-ischiensis_contig14.3387.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1932bp|location=Sequence derived from alignment at S-ischiensis_contig14:2386331..2389723+ (Schizocladia ischiensis KU_0333)
CAGACGACAGAGGTGGCGGGCCCCGGCATCACGGTTGCCGCACAGGATAC
CGTGGCGGCACCTGTTGCGGCGGTGACCACGGGGGCGGGTAGCTTGGGAG
CGGAGGCGGCGGCCGGCCAGCCCCCGCCACCCGCGCCGCTGCAGCAGACG
ACAGAGGTGGCGGGCCCCGGCATCACGGTTGCCGCACAGGATACCGTGGC
GGCACCTGTTGCGGCGGTGACCACGGGGGCGGGTAGCTTGGGAGCGGAGG
CGGCGGCCGGCCAGCCCCCGCCACCCGCGCCGCTGCAGGTGCAGCTCCGG
TCGGAGCGTGAGCTGCAGGCGGAGATAATGCGCCTGCTGCAGGCAATGAA
GGTCTTGGGGGACGAAAACACCTCCCTGATGCGGGAGAACGCCGGCGCGG
ACCAGGTCCGGAGGGAGAACGCCGCCGTGTGGGCGGAGATGAGGAGGTTC
CAGGCCAAGTACCAGGAGAGGTGCAGCTCCGGTCGGAGCGTGAGCTGCAG
GCGGAGATAATGCGCCTGCTGCAGGCAATGAAGGTCTTGGGGGACGAAAA
CACCTCCCTGATGCGGGAGAACGCCGGCGCGGACCAGGTCCGGAGGGAGA
ACGCCGCCGTGTGGGCGGAGATGAGGAGGTTCCAGGCCAAGTACCAGGAG
AGGTTCTTGCTCCTGAGGAAGTCGCTGGACGAGGTGGCTCGCAGGAACCC
GGAGGTTGCGGCGCAGGGCATCAGGGGGACCCCGCAGCACTCTGAGGGGG
GGGGTCACCGCCATCCCCACGCAACAGTGGAACAGCTCAAGGAGGAAGTG
CGGCGCCTGCAGCAGGCCAACAAGCAGATGCAGGTTCTTGCTCCTGAGGA
AGTCGCTGGACGAGGTGGCTCGCAGGAACCCGGAGGTTGCGGCGCAGGGC
ATCAGGGGGACCCCGCAGCACTCTGAGGGGGGGGGTCACCGCCATCCCCA
CGCAACAGTGGAACAGCTCAAGGAGGAAGTGCGGCGCCTGCAGCAGGCCA
ACAAGCAGATGCAGGGGGGTCTGCTAGAGGGCCGGGAGGCGAAGAAGCGC
CTGCTGGCCTACGAGCAGTGGTACGCCAAGTTCAAGGCCGACGTGTTGCG
CCAGCGCCAGCAGCAGCAACTCAAGCAGCACCAACAACAACAGCCGCAGC
CACAGCCACACCCGCCAACCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCCGCCGCCACCACTCAAGCATCAGCAGCAGCGGCGGCAACA
ACAACAACAACAGGGGGGTCTGCTAGAGGGCCGGGAGGCGAAGAAGCGCC
TGCTGGCCTACGAGCAGTGGTACGCCAAGTTCAAGGCCGACGTGTTGCGC
CAGCGCCAGCAGCAGCAACTCAAGCAGCACCAACAACAACAGCCGCAGCC
ACAGCCACACCCGCCAACCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCCGCCGCCACCACTCAAGCATCAGCAGCAGCGGCGGCAACAA
CAACAACAACAGCCGCACCAGCAACAACAACAGCGGCGGCAGTCGAGAGG
GTCCCCGGAGCTCCATGAGGGTGGTGCATCATCGGCCAGCCCAGGCCCGA
GCCCGGGCCATGGCGGCGCCGCCGGGACCGCGGGGCAGGGAATGATGAGA
CCTCCAGGGCAGGAGCCGCCAGGGGGCGGCGGCCCGGCGCCGGCGGCGGG
GGTTGGGGTTGCTCCAGGCTCGCCGCACCAGCAACAACAACAGCGGCGGC
AGTCGAGAGGGTCCCCGGAGCTCCATGAGGGTGGTGCATCATCGGCCAGC
CCAGGCCCGAGCCCGGGCCATGGCGGCGCCGCCGGGACCGCGGGGCAGGG
AATGATGAGACCTCCAGGGCAGGAGCCGCCAGGGGGCGGCGGCCCGGCGC
CGGCGGCGGGGGTTGGGGTTGCTCCAGGCTCG
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