mRNA_S-ischiensis_contig14.3383.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig14.3383.1
Unique NamemRNA_S-ischiensis_contig14.3383.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig14contigS-ischiensis_contig14:2358905..2359865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size962
Cds size960
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815707.4599817-CDS-S-ischiensis_contig14:2358904..23598641622815707.4599817-CDS-S-ischiensis_contig14:2358904..2359864Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2358905..2359864 +
1695739864.7090333-CDS-S-ischiensis_contig14:2358904..23598641695739864.7090333-CDS-S-ischiensis_contig14:2358904..2359864Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2358905..2359864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig14.3383.1prot_S-ischiensis_contig14.3383.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig14 2358905..2359864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig14.3383.1

>prot_S-ischiensis_contig14.3383.1 ID=prot_S-ischiensis_contig14.3383.1|Name=mRNA_S-ischiensis_contig14.3383.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=320bp
PSPRPGAGAGATAGAGAAAATAVGDPPSAAVPTGAGAAAATAVAVAEASS
ASATTSMALFGREIPPAPAVVGAPALAEPPSPDAATPAPAGAPTAAAWAW
ATGAGAPASAAAAGASSSTCMGLAGSAAREAAAGATAVATAVAAAAGGIC
IPAASSATVSMTSAESCPGAGAAASGSAASVSGAWAGWAAASAPGPTPAA
PAWSSCRGAFPMGASKFPSAGCSEALPPEFTPSPAATVEESRGCASSPVA
PASAPPCCCSSAGPGVPPSPSMGMQLRNPKARKQCRGQLAAQHPLGRLNA
LLSAGSALQGQLGSTPHTPT
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mRNA from alignment at S-ischiensis_contig14:2358905..2359865+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig14.3383.1 ID=mRNA_S-ischiensis_contig14.3383.1|Name=mRNA_S-ischiensis_contig14.3383.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=961bp|location=Sequence derived from alignment at S-ischiensis_contig14:2358905..2359865+ (Schizocladia ischiensis KU_0333)
CCCTCTCCCAGGCCCGGCGCTGGTGCGGGTGCGACGGCGGGCGCAGGCGC
AGCCGCTGCTACGGCCGTCGGTGACCCGCCGTCGGCAGCAGTCCCGACCG
GTGCCGGGGCCGCCGCCGCCACCGCAGTAGCAGTAGCAGAGGCATCTTCT
GCGTCTGCGACGACGTCCATGGCACTGTTCGGGAGGGAGATTCCTCCCGC
CCCTGCCGTCGTCGGGGCGCCAGCGCTAGCAGAGCCTCCCTCCCCAGACG
CCGCCACGCCTGCGCCAGCAGGCGCGCCAACGGCGGCCGCCTGGGCTTGG
GCGACCGGAGCAGGGGCTCCGGCATCGGCTGCTGCGGCCGGGGCCTCCTC
GTCCACCTGCATGGGTCTGGCCGGCTCAGCCGCGAGGGAAGCGGCGGCAG
GGGCCACCGCCGTGGCCACGGCTGTCGCGGCCGCGGCCGGGGGCATCTGC
ATCCCGGCAGCCTCGTCGGCTACGGTGTCCATGACGTCGGCGGAGAGTTG
TCCTGGTGCGGGCGCAGCCGCTTCAGGCTCGGCTGCGTCGGTCTCCGGGG
CGTGGGCGGGATGGGCTGCGGCGTCCGCGCCTGGGCCCACCCCAGCAGCA
CCGGCGTGGTCATCGTGCAGGGGGGCGTTTCCCATGGGGGCGTCCAAGTT
CCCTTCCGCGGGTTGTTCGGAAGCACTCCCCCCGGAATTCACGCCCTCTC
CTGCAGCGACCGTCGAAGAATCAAGGGGCTGCGCCTCCTCGCCCGTCGCG
CCTGCGTCGGCTCCACCCTGCTGCTGCAGCTCGGCTGGCCCAGGAGTCCC
ACCATCCCCGTCCATGGGTATGCAACTTCGCAACCCCAAAGCCAGAAAAC
AATGCCGCGGTCAACTGGCAGCCCAGCACCCCCTCGGTCGCTTGAACGCG
TTGCTCTCTGCCGGGTCTGCTCTGCAGGGGCAACTAGGATCCACCCCACA
CACCCCCACCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig14:2358905..2359865+

>mRNA_S-ischiensis_contig14.3383.1 ID=mRNA_S-ischiensis_contig14.3383.1|Name=mRNA_S-ischiensis_contig14.3383.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1920bp|location=Sequence derived from alignment at S-ischiensis_contig14:2358905..2359865+ (Schizocladia ischiensis KU_0333)
CCCTCTCCCAGGCCCGGCGCTGGTGCGGGTGCGACGGCGGGCGCAGGCGC
AGCCGCTGCTACGGCCGTCGGTGACCCGCCGTCGGCAGCAGTCCCGACCG
GTGCCGGGGCCGCCGCCGCCACCGCAGTAGCAGTAGCAGAGGCATCTTCT
GCGTCTGCGACGACGTCCATGGCACTGTTCGGGAGGGAGATTCCTCCCGC
CCCTGCCGTCGTCGGGGCGCCAGCGCTAGCAGAGCCTCCCTCCCCAGACG
CCGCCACGCCTGCGCCAGCAGGCGCGCCAACGGCGGCCGCCTGGGCTTGG
GCGACCGGAGCAGGGGCTCCGGCATCGGCTGCTGCGGCCGGGGCCTCCTC
GTCCACCTGCATGGGTCTGGCCGGCTCAGCCGCGAGGGAAGCGGCGGCAG
GGGCCACCGCCGTGGCCACGGCTGTCGCGGCCGCGGCCGGGGGCATCTGC
ATCCCGGCAGCCTCGTCGGCTACGGTGTCCATGACGTCGGCGGAGAGTTG
TCCTGGTGCGGGCGCAGCCGCTTCAGGCTCGGCTGCGTCGGTCTCCGGGG
CGTGGGCGGGATGGGCTGCGGCGTCCGCGCCTGGGCCCACCCCAGCAGCA
CCGGCGTGGTCATCGTGCAGGGGGGCGTTTCCCATGGGGGCGTCCAAGTT
CCCTTCCGCGGGTTGTTCGGAAGCACTCCCCCCGGAATTCACGCCCTCTC
CTGCAGCGACCGTCGAAGAATCAAGGGGCTGCGCCTCCTCGCCCGTCGCG
CCTGCGTCGGCTCCACCCTGCTGCTGCAGCTCGGCTGGCCCAGGAGTCCC
ACCATCCCCGTCCATGGGTATGCAACTTCGCAACCCCAAAGCCAGAAAAC
AATGCCGCGGTCAACTGGCAGCCCAGCACCCCCTCGGTCGCTTGAACGCG
TTGCTCTCTGCCGGGTCTGCTCTGCAGGGGCAACTAGGATCCACCCCACA
CACCCCCACCCCCTCTCCCAGGCCCGGCGCTGGTGCGGGTGCGACGGCGG
GCGCAGGCGCAGCCGCTGCTACGGCCGTCGGTGACCCGCCGTCGGCAGCA
GTCCCGACCGGTGCCGGGGCCGCCGCCGCCACCGCAGTAGCAGTAGCAGA
GGCATCTTCTGCGTCTGCGACGACGTCCATGGCACTGTTCGGGAGGGAGA
TTCCTCCCGCCCCTGCCGTCGTCGGGGCGCCAGCGCTAGCAGAGCCTCCC
TCCCCAGACGCCGCCACGCCTGCGCCAGCAGGCGCGCCAACGGCGGCCGC
CTGGGCTTGGGCGACCGGAGCAGGGGCTCCGGCATCGGCTGCTGCGGCCG
GGGCCTCCTCGTCCACCTGCATGGGTCTGGCCGGCTCAGCCGCGAGGGAA
GCGGCGGCAGGGGCCACCGCCGTGGCCACGGCTGTCGCGGCCGCGGCCGG
GGGCATCTGCATCCCGGCAGCCTCGTCGGCTACGGTGTCCATGACGTCGG
CGGAGAGTTGTCCTGGTGCGGGCGCAGCCGCTTCAGGCTCGGCTGCGTCG
GTCTCCGGGGCGTGGGCGGGATGGGCTGCGGCGTCCGCGCCTGGGCCCAC
CCCAGCAGCACCGGCGTGGTCATCGTGCAGGGGGGCGTTTCCCATGGGGG
CGTCCAAGTTCCCTTCCGCGGGTTGTTCGGAAGCACTCCCCCCGGAATTC
ACGCCCTCTCCTGCAGCGACCGTCGAAGAATCAAGGGGCTGCGCCTCCTC
GCCCGTCGCGCCTGCGTCGGCTCCACCCTGCTGCTGCAGCTCGGCTGGCC
CAGGAGTCCCACCATCCCCGTCCATGGGTATGCAACTTCGCAACCCCAAA
GCCAGAAAACAATGCCGCGGTCAACTGGCAGCCCAGCACCCCCTCGGTCG
CTTGAACGCGTTGCTCTCTGCCGGGTCTGCTCTGCAGGGGCAACTAGGAT
CCACCCCACACACCCCCACC
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