mRNA_S-ischiensis_contig14.3370.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig14.3370.1
Unique NamemRNA_S-ischiensis_contig14.3370.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig14contigS-ischiensis_contig14:2254379..2260149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size866
Cds size588
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.3987875-UTR-S-ischiensis_contig14:2254378..22544361622815724.3987875-UTR-S-ischiensis_contig14:2254378..2254436Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 2254379..2254436 +
1695739876.8408992-UTR-S-ischiensis_contig14:2254378..22544361695739876.8408992-UTR-S-ischiensis_contig14:2254378..2254436Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 2254379..2254436 +
1622815724.4138503-UTR-S-ischiensis_contig14:2257177..22571801622815724.4138503-UTR-S-ischiensis_contig14:2257177..2257180Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 2257178..2257180 +
1695739876.8528407-UTR-S-ischiensis_contig14:2257177..22571801695739876.8528407-UTR-S-ischiensis_contig14:2257177..2257180Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 2257178..2257180 +
1622815724.467985-UTR-S-ischiensis_contig14:2259932..22601491622815724.467985-UTR-S-ischiensis_contig14:2259932..2260149Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 2259933..2260149 +
1695739876.911228-UTR-S-ischiensis_contig14:2259932..22601491695739876.911228-UTR-S-ischiensis_contig14:2259932..2260149Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 2259933..2260149 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.4253495-CDS-S-ischiensis_contig14:2257180..22574231622815724.4253495-CDS-S-ischiensis_contig14:2257180..2257423Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2257181..2257423 +
1695739876.8644736-CDS-S-ischiensis_contig14:2257180..22574231695739876.8644736-CDS-S-ischiensis_contig14:2257180..2257423Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2257181..2257423 +
1622815724.435393-CDS-S-ischiensis_contig14:2258804..22589031622815724.435393-CDS-S-ischiensis_contig14:2258804..2258903Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2258805..2258903 +
1695739876.8756874-CDS-S-ischiensis_contig14:2258804..22589031695739876.8756874-CDS-S-ischiensis_contig14:2258804..2258903Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2258805..2258903 +
1622815724.44518-CDS-S-ischiensis_contig14:2259097..22591811622815724.44518-CDS-S-ischiensis_contig14:2259097..2259181Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2259098..2259181 +
1695739876.8889782-CDS-S-ischiensis_contig14:2259097..22591811695739876.8889782-CDS-S-ischiensis_contig14:2259097..2259181Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2259098..2259181 +
1622815724.454777-CDS-S-ischiensis_contig14:2259770..22599321622815724.454777-CDS-S-ischiensis_contig14:2259770..2259932Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2259771..2259932 +
1695739876.9015398-CDS-S-ischiensis_contig14:2259770..22599321695739876.9015398-CDS-S-ischiensis_contig14:2259770..2259932Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2259771..2259932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig14.3370.1prot_S-ischiensis_contig14.3370.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig14 2257181..2259932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig14.3370.1

>prot_S-ischiensis_contig14.3370.1 ID=prot_S-ischiensis_contig14.3370.1|Name=mRNA_S-ischiensis_contig14.3370.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=196bp
MPSAGEAALSKSGAFPNMSVMSDRALLIKGEHDVLNEDFNHGVEDMLAEP
VISDALLQHSIQSLCMELVDFCRITKTYYTEIKSMKDNSMSPQDAYKLAH
VIFENYIEEGSSLEVNIEEKMRLRLLTKDSEEVYVGLEDDAKANLFEDAE
REVIKLVHENLMNSFKRSTLYTEAKERLLSARKHLEDEEAVGGLL*
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mRNA from alignment at S-ischiensis_contig14:2254379..2260149+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig14.3370.1 ID=mRNA_S-ischiensis_contig14.3370.1|Name=mRNA_S-ischiensis_contig14.3370.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5771bp|location=Sequence derived from alignment at S-ischiensis_contig14:2254379..2260149+ (Schizocladia ischiensis KU_0333)
GCACTCCGCCCGCGCGAAGGAACACCTGGAGCATGAGAACAAGCACCCCA
CGAAAAAGGTGCGACCAATGGTGTTGTTGCTTGCTTGCGGGTTCCTTTGG
TGCCGACTTGTTAGGCGACCTGCCCCCCTCCACAGAGCTCTTGTGCTGTA
TGGTATTGTACCCTACAGCTACTACACTGCCACCGTGCCTGATGTAGATC
CAATTGCACTGTGATGGCATACCAAAATCGCTCTTTAGCGCGTGCACGCA
TCGCATTGCATCACATCACATCACGTGCGACGCCATGACATCATAGGACA
CGACTCCGTTTTATTTGGAGTTCCGCCTGGCGCACACAATGCTGACTGAT
CAATACCATAAAACTCGCCTGCATGCGAGTGTACTTTAAATTAACCGCTG
GCACCCCGGTGGCGCCCGCCCTACAACGACTCTGAGGCGTTGGACCTTAG
GGGGGCAGGGCCTGAACGTTACATGTGTTGTGCATTCAGACAGTTCATGG
AGACGTGTCAGTGACATGCCACTGGCCGGTTGAGGCTCTCAACATGTCCA
CATGCCCATCTCCTCGTTCCTTGGCACCAAAGTTGTTGTTCTGTGCTACG
TGTTCGCCATACCGGCCACCTAAGTTTGCATTGGAAATGTAACATTTCTC
CCCCTGCCTGAGGTCAAATGACTCTCTGCAGGGGTACTCAACTGCTGCAT
AGTTGGGGGGTCTGGCGTGGGAGGAGGGCGCCATCATTCCCTCTTTGTCT
GCCGTAACCATTGACTATCATGTAGACGTCAGTGCTGTGCTCCTCCCCTT
TCTCGTCATTTCAGTTGCGGAGTAGTGGCAGCAACAACACACATGAGTTG
ATATTGCTAGGGAAGCCAGGCAGCGTGGCAAGCCCAGCAATGCTCAATGA
ACACGGTATTTCGAAGTGCGAGAGCTCTAGTACTTGCCTTCTGCGGTTGC
GTGGGCGAGAGCGAGTACGAACGTGTTTTAGCTGTCGGTGTGACTGGCGC
GTAATTCGCCCATACTTTGAAGTGCTGAGCCTGTACTGTACTCTTGCACT
CTACTACAGCGAGTGAGAAAGTGCTGTATCCGGGTGCCTCTTTGGGGCCT
GTAAATGGCAGCAAACTCTTTCGCCCCCATGTCGCGGCAGCTGTGCCGAG
ACTTGACAATATTCCCCTGGGCGTAATCGACCCTGATCGGAAACGCGACC
GCTCGCCTTGCGACCGGCCAGCCTGTCGCCTTGTCTGGCGCGTTACTTTG
TAACAAAAACAAACCGGTAAAAAAGGCTGTCTCGCTCCAGGAACAGCTCA
GCTACAGTACTAACAGGAACAACACAGGGCGAGGTGCAGGCCACGTCACT
AAAGACCTCAACGGTGGCAATGATGTGATGTGATGTGATGTGGTTTGTAC
TCTAATGTTCAGTAGTTTGCCATTACATCACATCACATCAAACCACATCA
CTAAAGACCTCAACCACAGTGCCTACTAATATATCTCGATGACCGCACTC
CTACTCGAGTACCTACTCCCGGGTGTCTGGCAGCAGGAGTGAGCGGAATG
TTCCCCTGAAACCCAATCTGTTTTAAGCTTTGTCGTCCGGGACACGTGAC
GGTGAGGTCCGGGACCCCGTACCTCAGACTGGCCCGTAACTTAGCGGGGT
ACTACTGAACATGATGTGATGTGATGTGAACGTAGCGATGCGATGTCATG
TGTGCCACTAATACAAGAACACTCAATTCTTGAATGGGACAACTACTAGT
AGAATCTCACACACGTGCGATTGTACCTCGTTACAATTTATATGAATCAA
CGCCACGTGTACCTACGCTAATGTACCGCAGCTTGCTTTACATCACACCA
CAGCATCAGTGGCATTACACCACGTCCCATTTGAACACGACCCCGAACCG
CGGCCCTTCCTGGCTCGCACGCACAGAAAACCCAAGAACACACCAAGAGT
TTCACTTGCATTTTTTGTTTCTGGCCTCTCGTGCCGCCGTCTGCACCACC
GCCGCCGCCAGGGGATGCCATCGGCCGGCGAAGCCGCCCTCAGCAAGTCT
GGGGCCTTCTCCAATATGAGTGTCAAGTCTGACCGGGCCTTGTTAGTTAA
CCCTATTACCTCTGCTAAATTGGACATACACACTAAAACCCTACGACTAT
ACGGACCCCAGCGGCAAAAGGGTTAAGCGCGAGCACGACGTACGTAGCCA
AGACACAAACCAACAGCTACTGACAGTGCGTTTTTTGCTTTTGGCCTCTC
GTGCCACCGTCTCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCCTCCTCCTCCTCCTCCTCCCCCTCCTCCCTCCTCCTCCTCCT
CCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CATCTCCTCCCTCCTCCTCCTCCTCCTCCTCCTCCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCCCTCCTCCTCCTCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCATCTCCTCCTCCTCCTCCCCCTCCTCCCACCGCCAGG
TGATGCCCTCGGCCGGCGAGGCCGCCCTCAGCAAGTCCGGCGCCTTCCCC
AATATGAGCGTCATGTCCGACCGGGCGTTGCTGATCAAGGGCGAGCACGA
TGTGCTCAACGAGGACTTTAATCACGGCGTGGAGGACATGCTGGCCGAGC
CGGTTATTTCTGACGCGCTCCTGCAGCACAGCATCCAGTCCCTGTGCATG
GAGCTCGTGGACTTCTGCCGGATCACAAAGACCTACTACACGGAGGTGAA
TGAACACAAACGAACACTGAATCCGTATCATGCACATGCGATTGTACTTC
ATACCTCGTTGAGATTTTTTTTATCAAGCACGAGTGATTATTTTATATTC
TATGCAGCACAGCATCCAGTCCCTGTGCATGGAGCTCGTGGACTTCCGCC
GGATCACAAAGACCTACCAGGAGGAGGCGAGTGAACACAATGATCCGCAT
CAGTTGGCACGAGAACAGTATTTTTTTGCAAGAAAATAGATGGCGAGTGG
GAAAGAGGAGGTGTTCTGAAATGCGTTAAACACTAACATCATCCAGTCCC
TGTGCGTGGAGCTCATGGACTTCTGCCGGATCACAAAGACCTACCACGAG
GAGGTGAAGTGAACGAAACAGCCTGCACTAACACGAGAACAGTCAATCTC
ACACACGTGCGATCGTACCTCGTTGCAATTTATATGAATCACAGCCTGCA
TTGCTACTGTAGTAATTGATTGGCCACGACCAAAACACACACACTTCAAA
GTACAGTAGTTGCATACTTCGAGTATTCGGCAAACAACACGCATGCTGCT
GGGGACCAGAAGCACGCGGTCCCCCCGGGGCGTTGGCAGTAAAGTACGAG
CACGAGCATTTGTACCGACCATCCCGCCCGCGGCTTGAGCTACTTGTACG
AGCGGGGCTACAGCACCGAAACACTACTAGTAGTTCAAAGTACATACTCG
AGTGTATGTATACTTGGAAGCATGTGTGTGTACTCACGTTGTGCTTGCCG
TAGTCCCGAGACCATTGACCACGCGCCTCGGCCAAGACGGAGCAGGTACA
TACGGGTACATGTACTTCAGTATGTACTGTACTGCGACAAACGGGACAGC
GGCCTGCCCATGGAGCCCAACCCAAGGGACTCCACAAACGAAGAAAACCC
GGCGTGTGGATAGCCACTGCTGTAACACGAGAACACTCGATCTCACACAC
GTGCGATTGTACCTCGTTACAATTTATATGAATCACCGGCGTGTGGGCCC
CGAGCAGGACCAGGGAAGGTGGCTGAAAGTTCTGCCCTCTCCTCTCACTT
CGGGTAGAGCATATTTCTCGTTTAGGGTCTCCTTTCCACCGCTTCCTCAA
ATTTCTACAACCTCGAAGTAAGTATCGTGACAGCATCCCTTCGTGTAACT
TATCATGACAGCATCCCTCCTTGTCTTTGGGGCCGGACGGCCGCCCCCTC
ACCAAACACCACCACCACCACCACCACCACTACCACCACCACCACCACCA
CCACCACCACCACCACCGCCGCCGCCGCCACCACCACCGCCACCACCACC
AACACCACCACCACCACCACCACCACGACCACCACCACCGCCACCACCAC
CACGGTCTCTCATGTTCTGCCGCCAGATCAAGTCGATGAAGGACAACAGC
ATGTCGCCGCAGGATGCCTACAAGCTGGCGCACGTCATCTTCGAGAACTA
CATCGAGGAGGGCTCCTCCCTGGAGGTGAACACAACCATGGCACAAAAAT
GCGATTTCTTTGGCCCAAATAGTTTTTTGCGATATCTGATTTTCTCCCAA
ATTTGCGATCGAAAACCAGCACAAATATCAAGATTTCCCGCCAAAAAAGT
ATCCATTTGCTCGACTTGGCGCCCCCGAATATCCATTTTTTAACGTCGCA
CTTTTGTGCCATGGTTAAGGTGAACATCGAGGAGAAGATGCGGCTACGCT
TGCTCACCAAGGACTCGGAGGAGGTATACGTCGGCCTGGAGGACGACGCC
AAGGTACCTAGCCGTGGTAAAAAAGTGCGAGCATTTTTGCCCAAATATGT
AGTTTCTTGTGAACGTCGATAAAAAAGATTCGCTCGTTTATCTTCGTGCC
GAACTTTTCGCCCAAACTGTGACCGAACACCAGCCCAAATGTCGGAAAAA
AATGCCGAAACATCGATGCCAAGCCGTGGGGTTTCCATTCCTTGATACGG
TGTTGTCCAAATTTACACGACTTGTGCCCGGGGGCGCCAAAATCCGTTGG
GGTTCCGAACCGTGATACGGCGTTTCGGCACCAAAGGCCCAAAAACTTGC
ACAAATATCGATTGTACAGTGTATATTTTCCAAAAAATATCGATGTGCTC
GACTTGTGGCCACAAATTGCAATATTTTTACTGCTAATACGAGAGCAGTC
AATCGCACACACGTGCCATTGTACCTCGTTACGATTTATTGGAGTGGCAG
ATAAGCGGCGAGTTCCAGGCCCCGTGCCAAAAGGCTCGTCCCAAAACAGG
ACTCGAAGAAGCCCTTCTTCCCCTCGTTACAATTTATGTGAGTCACTGCC
ATATTTTTGATGTCCCGCTGTTGTGCCGTGGTTACGCCAAAGGCCAACCT
CTTCGAGGACGCGGAGCGGGAGGTGATCAAGCTCGTCCACGAGAACCTCA
TGAACTCCTTCAAAAGGTCGACCCTGTACACGGAGGCCAAGGAGCGGCTC
CTCTCCGCGCGCAAGCACCTCGAGGACGAAGAGGCCGTGGGCGGCCTCCT
GTGACGCTTTGCTCGAGCCTATTCTATTCTTATATATGTGGTGGGGTTGG
TGGTGCGCTCGGGGGGCCCTGTATGTCGCAGCAAGCCAAAAAGCGAGTGG
GAAAGAGGAGGTGTTCCTACTTGCACGAGTTCAGGGCCCCCTCCCCGGAA
GCCCCTCTACTAAAATACCATGGTCGGGCGGCCTCCTTTGACGCGACCTG
TCCCGGCCCGGGACCCCGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig14:2254379..2260149+

>mRNA_S-ischiensis_contig14.3370.1 ID=mRNA_S-ischiensis_contig14.3370.1|Name=mRNA_S-ischiensis_contig14.3370.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1176bp|location=Sequence derived from alignment at S-ischiensis_contig14:2254379..2260149+ (Schizocladia ischiensis KU_0333)
ATGCCCTCGGCCGGCGAGGCCGCCCTCAGCAAGTCCGGCGCCTTCCCCAA
TATGAGCGTCATGTCCGACCGGGCGTTGCTGATCAAGGGCGAGCACGATG
TGCTCAACGAGGACTTTAATCACGGCGTGGAGGACATGCTGGCCGAGCCG
GTTATTTCTGACGCGCTCCTGCAGCACAGCATCCAGTCCCTGTGCATGGA
GCTCGTGGACTTCTGCCGGATCACAAAGACCTACTACACGGAGATGCCCT
CGGCCGGCGAGGCCGCCCTCAGCAAGTCCGGCGCCTTCCCCAATATGAGC
GTCATGTCCGACCGGGCGTTGCTGATCAAGGGCGAGCACGATGTGCTCAA
CGAGGACTTTAATCACGGCGTGGAGGACATGCTGGCCGAGCCGGTTATTT
CTGACGCGCTCCTGCAGCACAGCATCCAGTCCCTGTGCATGGAGCTCGTG
GACTTCTGCCGGATCACAAAGACCTACTACACGGAGATCAAGTCGATGAA
GGACAACAGCATGTCGCCGCAGGATGCCTACAAGCTGGCGCACGTCATCT
TCGAGAACTACATCGAGGAGGGCTCCTCCCTGGAGATCAAGTCGATGAAG
GACAACAGCATGTCGCCGCAGGATGCCTACAAGCTGGCGCACGTCATCTT
CGAGAACTACATCGAGGAGGGCTCCTCCCTGGAGGTGAACATCGAGGAGA
AGATGCGGCTACGCTTGCTCACCAAGGACTCGGAGGAGGTATACGTCGGC
CTGGAGGACGACGCCAAGGTGAACATCGAGGAGAAGATGCGGCTACGCTT
GCTCACCAAGGACTCGGAGGAGGTATACGTCGGCCTGGAGGACGACGCCA
AGGCCAACCTCTTCGAGGACGCGGAGCGGGAGGTGATCAAGCTCGTCCAC
GAGAACCTCATGAACTCCTTCAAAAGGTCGACCCTGTACACGGAGGCCAA
GGAGCGGCTCCTCTCCGCGCGCAAGCACCTCGAGGACGAAGAGGCCGTGG
GCGGCCTCCTGTGAGCCAACCTCTTCGAGGACGCGGAGCGGGAGGTGATC
AAGCTCGTCCACGAGAACCTCATGAACTCCTTCAAAAGGTCGACCCTGTA
CACGGAGGCCAAGGAGCGGCTCCTCTCCGCGCGCAAGCACCTCGAGGACG
AAGAGGCCGTGGGCGGCCTCCTGTGA
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