mRNA_S-ischiensis_contig14.3369.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig14.3369.1 vs. uniprot
Match: A0A5N6P6T5_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P6T5_9ASTR) HSP 1 Score: 157 bits (397), Expect = 3.990e-40 Identity = 109/251 (43.43%), Postives = 147/251 (58.57%), Query Frame = 1
Query: 4 SRSIHVLDIYVNDLLITGSNPDAVEDMLKSMKAKFDTQDLGNATSVLGMEMHHNRDSKVLHLSQRKYADNILRRFGMEMCNSAPTP--GDFDAFHPVGKELLSSIDHGTYREIVRSLLCLCRLTRPDISCAVMQLSRVVSKP-----DALLRLERGAGSILKGTLSMGIKYVGKDVSSSGPVLEGYCDADYRGDLATRRSTTGYVYVYVLAQGPIVWDSKLQ-TIAQSSTESEYIGLASAGNEAVYLRELL 732
SR + VL +YV+DL+ITG D ++ + ++ +F ++LG LG+E+H+ D VLH Q KYA ++L RF M MC A TP + GKEL D YR+IV SL+ L +TRPDIS V LSR + P A+ RL R +KG+++ GI++ K S P L GYCDADY GDL TRRST GYV++Y Q PI+W SK Q T++ S+TE+EY A A E V++ LL
Sbjct: 945 SRVVMVL-VYVDDLVITGDVEDEIQQLKYNLNIQFKMKNLGKLVHFLGLEIHYGDDKLVLH--QSKYALDLLSRFKMNMCKPAVTPMEASLKLYADDGKELA---DPTEYRKIVGSLIYL-TITRPDISFTVGVLSRYMENPCKSHMHAVKRLLR----YVKGSVTQGIEF--KREFESEPKLVGYCDADYAGDLNTRRSTIGYVFMY--GQSPILWCSKRQPTVSLSTTEAEYRAAAMAAQECVWVMLLL 1180
BLAST of mRNA_S-ischiensis_contig14.3369.1 vs. uniprot
Match: A0A6H5LCH2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCH2_9PHAE) HSP 1 Score: 140 bits (352), Expect = 5.680e-37 Identity = 88/242 (36.36%), Postives = 139/242 (57.44%), Query Frame = 1
Query: 28 IYVNDLLITGSNPDAVEDMLKSMKAKFDTQDLGNATSVLGMEMHHNRDSKVLHLSQRKYADNILRRFGMEMCNSAPTPGDFDAFHPVGKELLSSIDHGT-YREIVRSLLCLCRLTRPDISCAVMQLSRVVSKPDA-----LLRLERGAGSILKGTLSMGIKYVGKDVSSSGPVLEGYCDADYRGDLATRRSTTGYVYVYVLAQGPIVWDSKLQTI-AQSSTESEYIGLASAGNEAVYLRELL 732
+YV+D+L+TG+N + V +++ MK +F+T DLG+A ++GM +H NRD+ + L+Q Y +L +FGM + TP + V +E + D T +R S L +CR +RPD+S ++ L++ ++KP L RL R LKGT S+GI Y + +S+G L Y D+D+ GD+ R+STTG + LA G + + QT+ A SS E+EY+ ++ A +Y R LL
Sbjct: 2 VYVDDILLTGTNEELVSTIIEQMKERFETVDLGDAKFIVGMAIHRNRDAGTILLTQEAYTKAVLAKFGMADLHPTKTPAEVGPMSTVVEEETLTPDETTMFRSATGSALYICRKSRPDLSHTILVLTKSMAKPGTKAWAKLKRLMR----YLKGTASLGITY--SEDASNGGKLTTYVDSDFAGDIDDRKSTTGVIIE--LAGGVVDSTATKQTVTAVSSAEAEYVAMSKACKIILYWRHLL 235
BLAST of mRNA_S-ischiensis_contig14.3369.1 vs. uniprot
Match: A0A094G7N8_9PEZI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pseudogymnoascus sp. VKM F-4516 (FW-969) TaxID=1420910 RepID=A0A094G7N8_9PEZI) HSP 1 Score: 143 bits (360), Expect = 2.280e-36 Identity = 91/240 (37.92%), Postives = 133/240 (55.42%), Query Frame = 1
Query: 19 VLDIYVNDLLITGSNPDAVEDMLKSMKAKFDTQDLGNATSVLGMEMHHNRDSKVLHLSQRKYADNILRRFGMEMCNSAPTPGDFDAFHPVGKELLSSIDHGTYREIVRSLLCLCRLTRPDISCAVMQLSRVVSKPDAL-LRLERGAGSILKGTLSMGIKYVGKDVSSSGPVLEGYCDADYRGDLATRRSTTGYVYVYVLAQGPIVWDSKLQTI-AQSSTESEYIGLASAGNEAVYLRELL 732
++ +YV+DL I G N D ++ +K +K F +DLG LG+E+ ++ + L L Q KY +L RF + + TP + KE + + ++ + SLL L TRPDI+ A + L+R S P + L T +GI Y + ++ L GYCDADY GDLAT +ST GY++ LA+GPI+W SKLQ+I AQS+TE+EYI + A EAVY++ LL
Sbjct: 192 IISLYVDDLAIIGPNLDTIKAFIKELKNYFKLKDLGIIKDYLGVEISYDIKNGKLKLGQSKYIQKVLDRFNINNKSPKYTPIKANIKLEPNKEQATPKEIKWFQMAIGSLLYLAMATRPDITYATILLARFASNPSIEHVNAINNIFKYLSKTKDLGIIYTREGDNTD--YLSGYCDADYAGDLATAKSTNGYIFY--LAKGPIMWKSKLQSIIAQSTTEAEYIAINIASKEAVYIKSLL 427
BLAST of mRNA_S-ischiensis_contig14.3369.1 vs. uniprot
Match: A0A0V0IN51_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0IN51_SOLCH) HSP 1 Score: 142 bits (359), Expect = 5.690e-36 Identity = 94/248 (37.90%), Postives = 138/248 (55.65%), Query Frame = 1
Query: 13 IHVLDIYVNDLLITGSNPDAVEDMLKSMKAKFDTQDLGNATSVLGMEMHHNRDSKVLHLSQRKYADNILRRFGMEMCNSAPTPGDFDAFHPVGKELLSSIDHG------TYREIVRSLLCLCRLTRPDISCAVMQLSRVVSKPDAL-LRLERGAGSILKGTLSMGIKYVGKDVSSSGPVLEGYCDADYRGDLATRRSTTGYVYVYVLAQGPIVWDSKLQ-TIAQSSTESEYIGLASAGNEAVYLRELL 732
+ V+ +YV+DLL+TGSN V ++ M+ KF+ DLG + LGME+H + + + +SQRKYA +IL+RF ME C S PTP V E +S + G YR ++ SLL L TRPD+ LSR + P + L + + +KGT GI + ++ L GY D+D+ G + +ST+GY + L G W+SK Q +AQSS E+EYI A A N+A++LR++L
Sbjct: 147 VFVVSLYVDDLLVTGSNKAMVNQFMQEMETKFEMSDLGEMSYFLGMEIH--QVTAGIFISQRKYAWDILKRFKMERCKSVPTP-------LVHNEKISKFEGGYRADPTVYRSLIGSLLYL-TATRPDLMFTTSLLSRFMQAPSQVHLGVAKRTLRYIKGTADYGIWFKREEQGQ----LMGYSDSDWAGSVDDMKSTSGYAFT--LGSGMFSWNSKKQEVVAQSSAEAEYIAAAGATNQALWLRKIL 378
BLAST of mRNA_S-ischiensis_contig14.3369.1 vs. uniprot
Match: UPI000B8F0685 (secreted RxLR effector protein 161-like n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI000B8F0685) HSP 1 Score: 137 bits (344), Expect = 6.450e-36 Identity = 104/251 (41.43%), Postives = 142/251 (56.57%), Query Frame = 1
Query: 4 SRSIHVLDIYVNDLLITGSNPDAVEDMLKSMKAKFDTQDLGNATSVLGMEMHHNRDSKVLHLSQRKYADNILRRFGMEMCNSAPTPGDFDA--FHPVGKELLSSIDHGTYREIVRSLLCLCRLTRPDISCAVMQLSRVVSKP-----DALLRLERGAGSILKGTLSMGIKYVGKDVSSSGPVLEGYCDADYRGDLATRRSTTGYVYVYVLAQGPIVWDSKLQ-TIAQSSTESEYIGLASAGNEAVYLRELL 732
S+ + VL +Y +DL+ITG + +E + +++ +F +D+G + LG+E+ + + +LH Q+KY ++L RFGM C TP D A GKEL D YR+IV SL+ L LTR DI+ V LSR V P DA+ R+ R +K TL GIK+ G+ L GYCDADY GDL TRRSTT YV+ L +G I W SK Q TI+ S+TE+EY A E V+L+ LL
Sbjct: 5 SKLVVVL-VYEDDLIITGDDKKGIEQLKRNVCVRFHMKDIGRLSHFLGLEIKYEERALILH--QQKYCIDLLTRFGMLDCKPINTPMDVTAKLCADKGKELE---DPTMYRKIVGSLIYL-TLTRQDIAFEVGVLSRYVQNPRKPHLDAVRRVMR----YVKMTLGFGIKFDGEVKLD----LVGYCDADYAGDLDTRRSTTRYVFK--LGRGVITWCSKRQPTISLSTTEAEYRAATMAAQEIVWLQLLL 238
BLAST of mRNA_S-ischiensis_contig14.3369.1 vs. uniprot
Match: A0A150FV84_GONPE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FV84_GONPE) HSP 1 Score: 143 bits (360), Expect = 1.580e-35 Identity = 94/239 (39.33%), Postives = 140/239 (58.58%), Query Frame = 1
Query: 28 IYVNDLLITGSNPDAVEDMLKSMKAKFDTQDLGNATSVLGMEMHHNRDSKVLHLSQRKYADNILRRFGMEMCNSAPTPGDFDAFHPVGKELLSSIDHGT-YREIVRSLLCLCRLTRPDISCAVMQLSRVVSKPD-ALLRLERGAGSILKGTLSMGIKYVGKDVSSSGPVLEGYCDADYRGDLATRRSTTGYVYVYVLAQGPIVWDSKLQ-TIAQSSTESEYIGLASAGNEAVYLRELLA 735
++V+D LI G N DA +L S+K KF+ ++L AT LG+E+ ++R L +SQRKYA +L RF M CN P A E D + +RE++ +L+ L TRPDI+ V +L+R ++KP A +G L+GT +G+ + G PV+ + D+D+ GDL TRRSTTG+V+V+ A + W S+LQ T+A SS E+EY+ +SA EA++L +LLA
Sbjct: 323 VHVDDFLIAGEN-DAEVRILASLKGKFEMRELDGATYFLGIEIAYDRGKGELRMSQRKYAMEVLERFEMADCNPRVVPMAPSAVLRRAGEKEEPFDEASRFRELIGALMYLAVYTRPDIAQGVYRLARYMAKPTKAHWEHAKGILRYLRGTCDLGLVFGG----DGKPVVTAFSDSDWAGDLDTRRSTTGFVFVFNGAA--VSWRSRLQPTVAASSVEAEYMAASSATREALWLEQLLA 554
BLAST of mRNA_S-ischiensis_contig14.3369.1 vs. uniprot
Match: Q94EV3_MAIZE (Fourf gag/pol protein n=2 Tax=Zea mays TaxID=4577 RepID=Q94EV3_MAIZE) HSP 1 Score: 144 bits (362), Expect = 1.900e-35 Identity = 97/241 (40.25%), Postives = 137/241 (56.85%), Query Frame = 1
Query: 19 VLDIYVNDLLITGSNPDAVEDMLKSMKAKFDTQDLGNATSVLGMEMHHNRDSKVLHLSQRKYADNILRRFGMEMCNSAPTPGDFDAFHPVGKELLSSIDHGTYREIVRSLLCLCRLTRPDISCAVMQLSRVVSKP--DALLRLERGAGSILKGTLSMGIKYVGKDVSSSGPVLEGYCDADYRGDLATRRSTTGYVYVYVLAQGPIVWDSKLQTIAQSST-ESEYIGLASAGNEAVYLRELL 732
+L +YV+D+LI GSN + +E++ + + F+ +DLG A +L +++ D V L Q Y + +L RFG C+ APTP +D + K + D TY +I+ SL+ L TRPDIS AV +LSR VSKP D LER LKGT++ GI Y G VLEGYCDA++ D +T+GYV+++ G + W S QTI ST E+E L +AG EA +LR+ L
Sbjct: 959 MLCLYVDDILIFGSNLNVIEEVKNLLSSNFEMKDLGEADVILNIKLVRKADGGVT-LLQSHYVEKVLSRFGFSDCDPAPTP--YDPSVLLRKNRRIARDQLTYSQIIGSLMYLASATRPDISYAVSKLSRFVSKPGDDHWCALERVL-RYLKGTMTYGIHYTGNP-----KVLEGYCDANWISDADELYATSGYVFLF--GGGAVSWKSCKQTILTKSTMEAELAALDTAGAEAEWLRDFL 1188
BLAST of mRNA_S-ischiensis_contig14.3369.1 vs. uniprot
Match: Q9LH44_ARATH (Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9LH44_ARATH) HSP 1 Score: 144 bits (362), Expect = 1.940e-35 Identity = 95/249 (38.15%), Postives = 146/249 (58.63%), Query Frame = 1
Query: 4 SRSIHVLDIYVNDLLITGSNPDAVEDMLKSMKAKFDTQDLGNATSVLGMEMHHNRDSKVLHLSQRKYADNILRRFGMEMCNSAPTPGDFDAFHPVGK--ELLSSI--DHGTYREIVRSLLCLCRLTRPDISCAVMQLSRVVSKP-DALLRLERGAGSILKGTLSMGIKYVGKDVSSSGPVLEGYCDADYRGDLATRRSTTGYVYVYVLAQGPIVWDS-KLQTIAQSSTESEYIGLASAGNEAVYLRELL 732
S+ I V+ +YV+D+++TGSN +E + MK +F+ DLG + LGME+ N+D + + LSQ YA +L++FGM+ C S TP P GK E+LS D YR ++ +L LC +RPDI A LSR + P L+ + +KGTL+ GI + K V P L G+ D+D+ G + ++ST+GYV+ + G W+S K +T+AQS+ E+EYI + SA N+A++L+ L+
Sbjct: 1025 SKEILVVSLYVDDIIVTGSNVKEIERFKEEMKNEFEMTDLGELSYFLGMEV--NQDDEGIFLSQENYAKKLLKKFGMQECKSVSTP-----LTPHGKIEEVLSEKLEDVTMYRSMIGGMLYLCA-SRPDIMYASSYLSRYMRSPLKQHLQEAKRVLRYVKGTLTYGIHF--KRVEK--PELVGFSDSDWAGSVEDKKSTSGYVFT--IGSGAFCWNSSKQKTVAQSTAEAEYIAVCSAANQAIWLQRLV 1259
BLAST of mRNA_S-ischiensis_contig14.3369.1 vs. uniprot
Match: A0A438CPW6_VITVI (Putative disease resistance RPP13-like protein 1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CPW6_VITVI) HSP 1 Score: 142 bits (359), Expect = 5.160e-35 Identity = 91/242 (37.60%), Postives = 142/242 (58.68%), Query Frame = 1
Query: 19 VLDIYVNDLLITGSNPDAVEDMLKSMKAKFDTQDLGNATSVLGMEMHHNRDSKVLHLSQRKYADNILRRFGMEMCNSAPTPGDFDAFHPVGKELLSSIDH-GTYREIVRSLLCLCRLTRPDISCAVMQLSRVVSKPDAL-LRLERGAGSILKGTLSMGIKYVGKDVSSSGPVLEGYCDADYRGDLATRRSTTGYVYVYVLAQGPIVWDSKLQ-TIAQSSTESEYIGLASAGNEAVYLRELLA 735
V+ +YV+D+L+TGSN + D M+ F+ DLG LGME++ + S + +SQRKYA +IL++F +E C TP + K ++ YR +V SLL L +TRPD+ LSR +S P + +R+ + +KGT ++GI Y+ + G L+GY D+D+ G + +ST+GY + + G I W+S+ Q +AQS+TE+EYI LA+A N+A++LR+LLA
Sbjct: 2223 VVSLYVDDMLVTGSNVKLLADFKMEMQDVFEMSDLGIMNYFLGMEIY--QCSWGIFISQRKYAMDILKKFKLESCKEVATP--LAQNEKISKNDGEKLEEPSAYRSLVGSLLYL-TVTRPDLMFPASLLSRFMSSPSNVHMRVAKRVLKYVKGTTNLGIWYL----KTGGVKLDGYADSDWAGSVDDMKSTSGYAFT--IGSGVICWNSRKQEVVAQSTTEAEYISLAAAANQAIWLRKLLA 2453
BLAST of mRNA_S-ischiensis_contig14.3369.1 vs. uniprot
Match: A0A1J3DEI6_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DEI6_NOCCA) HSP 1 Score: 140 bits (353), Expect = 5.390e-35 Identity = 94/249 (37.75%), Postives = 141/249 (56.63%), Query Frame = 1
Query: 19 VLDIYVNDLLITGSNPDAVEDMLKSMKAKFDTQDLGNATSVLGMEMHHNRDSKVLHLSQRKYADNILRRFGMEMCNSAPTP--GDFD---AFHPVGKELLSSIDHGTYREIVRSLLCLCRLTRPDISCAVMQLSRVVSKP-----DALLRLERGAGSILKGTLSMGIKYVGKDVSSSGPVLEGYCDADYRGDLATRRSTTGYVYVYVLAQGPIVWDSKLQTI-AQSSTESEYIGLASAGNEAVYLRELL 732
+L +YV+D+LI GSN D + ++ + + +F+ +DLG A +LGME+ R SK L LSQ+ Y +L RF M TP F+ A P E + ++ Y V L+ TRPD++ AV Q+S+ +SKP +A+ + R LKGT G+ + G++ S + G+ D+DY GDL RRSTTG+V+ LA G I W S LQTI A S+TE+EY+ + A EA++++ L+
Sbjct: 197 ILLLYVDDMLIAGSNMDDIVELKRLLGREFEMKDLGAAKKILGMEIRRERSSKRLWLSQKAYIQKVLERFDMSGAKPVSTPLANHFNLETAQSPKTGEEIKDMEQVPYASAVGCLMYAMVCTRPDLAQAVSQVSKYMSKPGREHWNAVKWVLR----YLKGTAEDGLMFGGQECGS----VVGFVDSDYAGDLDNRRSTTGFVFT--LAGGAICWRSVLQTIVAMSTTEAEYMAMGEAAKEALWVQGLV 435 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig14.3369.1 >prot_S-ischiensis_contig14.3369.1 ID=prot_S-ischiensis_contig14.3369.1|Name=mRNA_S-ischiensis_contig14.3369.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=250bp ESRSIHVLDIYVNDLLITGSNPDAVEDMLKSMKAKFDTQDLGNATSVLGMback to top mRNA from alignment at S-ischiensis_contig14:2240084..2240911- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig14.3369.1 ID=mRNA_S-ischiensis_contig14.3369.1|Name=mRNA_S-ischiensis_contig14.3369.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=828bp|location=Sequence derived from alignment at S-ischiensis_contig14:2240084..2240911- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig14:2240084..2240911- >mRNA_S-ischiensis_contig14.3369.1 ID=mRNA_S-ischiensis_contig14.3369.1|Name=mRNA_S-ischiensis_contig14.3369.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1500bp|location=Sequence derived from alignment at S-ischiensis_contig14:2240084..2240911- (Schizocladia ischiensis KU_0333)back to top |