mRNA_S-ischiensis_contig14.3368.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig14.3368.1 vs. uniprot
Match: D7G118_ECTSI (Rab1A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G118_ECTSI) HSP 1 Score: 349 bits (895), Expect = 2.600e-119 Identity = 181/202 (89.60%), Postives = 185/202 (91.58%), Query Frame = 2
Query: 197 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQDSFDHVNDWLSEVNRYASEGTSKLLIGNKSDRSDKQVSTEAAKAFAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAAQQVDSSTVQLGAGGGNVSPTSKCC 802
MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQ+SFDHVNDWLSEVNRYASEGTSKLLIGNKSDR DK V + AAK +AESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAA QVD+STV LG KCC
Sbjct: 1 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQESFDHVNDWLSEVNRYASEGTSKLLIGNKSDREDKVVDSAAAKEYAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAATQVDNSTVNLGGXXXXXXXXXKCC 202
BLAST of mRNA_S-ischiensis_contig14.3368.1 vs. uniprot
Match: A0A835Z965_9STRA (Rab1A, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z965_9STRA) HSP 1 Score: 343 bits (881), Expect = 4.040e-117 Identity = 180/206 (87.38%), Postives = 188/206 (91.26%), Query Frame = 2
Query: 197 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQDSFDHVNDWLSEVNRYASEGTSKLLIGNKSDRSDKQVSTEAAKAFAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAAQQVDSS----TVQLGAGGGNVSPTSKCC 802
MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT Q+SF HVNDWLSEVNRYASEGTSKLLIGNKSDR+DK V+TE AK+FA+SLGIPFLETSAK+ASNVEEAFLTMASELIRTREARAAQQ +SS TVQL G + KCC
Sbjct: 1 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVNDWLSEVNRYASEGTSKLLIGNKSDRADKAVTTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAESSGTAATVQLRPGASGGGSSGKCC 206
BLAST of mRNA_S-ischiensis_contig14.3368.1 vs. uniprot
Match: W7TI50_9STRA (Rab1 family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TI50_9STRA) HSP 1 Score: 311 bits (798), Expect = 2.010e-104 Identity = 162/200 (81.00%), Postives = 172/200 (86.00%), Query Frame = 2
Query: 197 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQDSFDHVNDWLSEVNRYASEGTSKLLIGNKSDRSDKQVSTEAAKAFAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAAQQVDSSTVQLGAGGGNVSPTSK 796
MSKRDYD LFKLVLIGD+GVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKT KLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT ++SF+H+ DWL+EVNRYASEGT KLL+GNKSDR DK VSTE AK FA+ LGIPFLETSAKNASNVEEAFLTMA ELIR REA+ A G G VS +SK
Sbjct: 1 MSKRDYDFLFKLVLIGDTGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTFKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNEESFEHIQDWLNEVNRYASEGTCKLLVGNKSDRPDKVVSTERAKKFADELGIPFLETSAKNASNVEEAFLTMAQELIRLREAKGAAAPGPGGAASGKSGDTVSLSSK 200
BLAST of mRNA_S-ischiensis_contig14.3368.1 vs. uniprot
Match: F0YFR6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFR6_AURAN) HSP 1 Score: 309 bits (792), Expect = 1.290e-103 Identity = 162/209 (77.51%), Postives = 176/209 (84.21%), Query Frame = 2
Query: 197 MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQDSFDHVNDWLSEVNRYASEGTSKLLIGNKSDRSDKQVSTEAAKAFAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAAQQVDSSTVQLGAGG-------GNVSPTSKCC 802
MSKRDYDHLFKLVLIGD+GVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVK+D KTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT +SFDHV+DWL+EVNRYA+EGT KLL+GNK D DK V+TEAAK +A+ LGIPFLETSAKNA+NVEEAFLTMA ELIR REA S + + GAGG G S T KCC
Sbjct: 1 MSKRDYDHLFKLVLIGDTGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKVDGKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSSESFDHVSDWLTEVNRYANEGTCKLLVGNKCDMEDKVVTTEAAKEYADGLGIPFLETSAKNATNVEEAFLTMAGELIRLREA-------SQSAKPGAGGASGLKLSGGSSRTKKCC 202
BLAST of mRNA_S-ischiensis_contig14.3368.1 vs. uniprot
Match: A0A7S3VAP6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VAP6_9STRA) HSP 1 Score: 309 bits (792), Expect = 1.590e-103 Identity = 163/203 (80.30%), Postives = 174/203 (85.71%), Query Frame = 2
Query: 203 KRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQDSFDHVNDWLSEVNRYASEGTSKLLIGNKSDRS-DKQVSTEAAKAFAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARA--AQQVDSSTVQLGAGGGNVSPTSKCC 802
K DYD+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT QDSFDHVNDWL EVNRYASEGT KLL+GNKSDR+ DK V+ E AK FA+ +GIPFLETSAK+A+NVEEAFLTMASELI+ R AR A+ D VQLG G S CC
Sbjct: 8 KSDYDYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQDSFDHVNDWLKEVNRYASEGTCKLLVGNKSDRTTDKVVTAEQAKEFADDIGIPFLETSAKSAANVEEAFLTMASELIKQRIARGGTAEDADGDNVQLGGGKRAKEMMSNCC 210
BLAST of mRNA_S-ischiensis_contig14.3368.1 vs. uniprot
Match: A0A7S2N4U8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N4U8_9STRA) HSP 1 Score: 301 bits (771), Expect = 2.470e-100 Identity = 162/208 (77.88%), Postives = 172/208 (82.69%), Query Frame = 2
Query: 185 SQGTMSK-RDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQDSFDHVNDWLSEVNRYASEGTSKLLIGNKSDRS-DKQVSTEAAKAFAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAAQQVDSSTVQLGAGGGNVSPTSKCC 802
S G+ SK RDYDHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT +DSFDHVNDW+ EVNRYASEGT KLL+GNKSDR+ DK V E AK FA+ LGI FLETSAK+A NVEEAFLTMA ELI+ R R + D V L G G S CC
Sbjct: 4 SNGSSSKSRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSKDSFDHVNDWMKEVNRYASEGTCKLLVGNKSDRTADKIVKEEEAKEFADELGIAFLETSAKSAKNVEEAFLTMAGELIKQRAERGSNGDDKQKVSLN-GEGRSQVMSNCC 210
BLAST of mRNA_S-ischiensis_contig14.3368.1 vs. uniprot
Match: A0A7S2C3M2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C3M2_9STRA) HSP 1 Score: 300 bits (768), Expect = 6.360e-100 Identity = 153/202 (75.74%), Postives = 172/202 (85.15%), Query Frame = 2
Query: 200 SKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQDSFDHVNDWLSEVNRYASEGTSKLLIGNKSDRSDKQVSTEAAKAFAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAAQQVDSSTVQLGAGGGNVSPTSKCCN 805
+KRDYDHLFKLVLIGDSGVGKSCLLLRFAD+AFT+SYISTIGVDFRFRT+K++K TVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT Q+SF+HV+DWL+EVNRYASEGT KLL+GNKSDR+D VS+E AK +AE LGIPFLETSAKNA NVE AFLTMASELI+ R+AR + + +L G CCN
Sbjct: 8 TKRDYDHLFKLVLIGDSGVGKSCLLLRFADNAFTESYISTIGVDFRFRTIKVEKNTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFNHVSDWLTEVNRYASEGTCKLLVGNKSDRADWAVSSEEAKVYAEKLGIPFLETSAKNAENVETAFLTMASELIKIRQARGPKTTATGATKLERG--KKIRNKACCN 207
BLAST of mRNA_S-ischiensis_contig14.3368.1 vs. uniprot
Match: A0A6V1NVS4_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NVS4_HETAK) HSP 1 Score: 299 bits (766), Expect = 2.920e-99 Identity = 156/208 (75.00%), Postives = 177/208 (85.10%), Query Frame = 2
Query: 194 TMSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQDSFDHVNDWLSEVNRYASEGTSKLLIGNKSDRSD-----KQVSTEAAKAFAESLGIPFLETSAKNASNVEEAFLTMASELIRTREARAAQQVDSSTVQLGAGGGNVSPTSKCC 802
TM+KRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRF+TVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDV ++SF+HV+ WLSEVNRYA+EGT KLL+GNKSDR++ +QV+ E AK +A+ LGIPF+ETSAK+ASNVEEAFLTMAS+LI+ REAR + V LG+ S KCC
Sbjct: 25 TMAKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFKTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVMNKESFEHVSAWLSEVNRYANEGTCKLLVGNKSDRAEEAPDARQVAAEEAKKYADDLGIPFIETSAKSASNVEEAFLTMASQLIQLREARGEDESMKPAVTLGSR--QSSAKDKCC 230
BLAST of mRNA_S-ischiensis_contig14.3368.1 vs. uniprot
Match: A0A1V9ZQI8_9STRA (Rab1 family GTPase n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZQI8_9STRA) HSP 1 Score: 297 bits (761), Expect = 6.410e-99 Identity = 154/172 (89.53%), Postives = 160/172 (93.02%), Query Frame = 2
Query: 206 RDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQDSFDHVNDWLSEVNRYASEGTSKLLIGNKSD-RSDKQVSTEAAKAFAESLGIPFLETSAKNASNVEEAFLTMASELIRTRE 718
RDYDHLFKLVLIGDSGVGKSCLLLRFADDAFT+SYI+TIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVT Q+SFDHVNDWL+EVNRYASEGT KLL+GNKSD S K VS E AKAFA+SL IPFLETSAKNA NVEEAFLTMASELI RE
Sbjct: 3 RDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTESYITTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVNDWLNEVNRYASEGTCKLLVGNKSDITSRKVVSYETAKAFADSLAIPFLETSAKNAQNVEEAFLTMASELITIRE 174
BLAST of mRNA_S-ischiensis_contig14.3368.1 vs. uniprot
Match: A0A7S4JIY9_9STRA (Hypothetical protein n=2 Tax=Eupodiscales TaxID=33838 RepID=A0A7S4JIY9_9STRA) HSP 1 Score: 298 bits (763), Expect = 1.440e-98 Identity = 155/181 (85.64%), Postives = 163/181 (90.06%), Query Frame = 2
Query: 185 SQGTMSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTGQDSFDHVNDWLSEVNRYASEGTSKLLIGNKSDR-SDKQVSTEAAKAFAESLGIPFLETSAKNASNVEEAFLTMASELIRTREAR 724
S +KRDYD+LFKLVLIGDSGVGKSCLLLRFADDAFT+SYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGII+VYDVT DSFDHVNDWL EVNRYASEGT KLLIGNKSDR SDK V+ E AK FA+ LGI FLETSAK+A NVEEAFLTMA ELI+ REAR
Sbjct: 40 SASAANKRDYDYLFKLVLIGDSGVGKSCLLLRFADDAFTESYISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIILVYDVTSADSFDHVNDWLKEVNRYASEGTCKLLIGNKSDRTSDKVVAAEKAKEFADELGIAFLETSAKSAKNVEEAFLTMAGELIKQREAR 220 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig14.3368.1 >prot_S-ischiensis_contig14.3368.1 ID=prot_S-ischiensis_contig14.3368.1|Name=mRNA_S-ischiensis_contig14.3368.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=204bp MSKRDYDHLFKLVLIGDSGVGKSCLLLRFADDAFTDSYISTIGVDFRFRTback to top mRNA from alignment at S-ischiensis_contig14:2239311..2248054- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig14.3368.1 ID=mRNA_S-ischiensis_contig14.3368.1|Name=mRNA_S-ischiensis_contig14.3368.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=8744bp|location=Sequence derived from alignment at S-ischiensis_contig14:2239311..2248054- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig14:2239311..2248054- >mRNA_S-ischiensis_contig14.3368.1 ID=mRNA_S-ischiensis_contig14.3368.1|Name=mRNA_S-ischiensis_contig14.3368.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1224bp|location=Sequence derived from alignment at S-ischiensis_contig14:2239311..2248054- (Schizocladia ischiensis KU_0333)back to top |