mRNA_S-ischiensis_contig14.3360.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig14.3360.1
Unique NamemRNA_S-ischiensis_contig14.3360.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig14contigS-ischiensis_contig14:2201278..2201860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size583
Cds size552
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815707.2236435-UTR-S-ischiensis_contig14:2201277..22013081622815707.2236435-UTR-S-ischiensis_contig14:2201277..2201308Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 2201278..2201308 +
1695739864.6208808-UTR-S-ischiensis_contig14:2201277..22013081695739864.6208808-UTR-S-ischiensis_contig14:2201277..2201308Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 2201278..2201308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815707.24039-CDS-S-ischiensis_contig14:2201308..22018601622815707.24039-CDS-S-ischiensis_contig14:2201308..2201860Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2201309..2201860 +
1695739864.6304631-CDS-S-ischiensis_contig14:2201308..22018601695739864.6304631-CDS-S-ischiensis_contig14:2201308..2201860Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2201309..2201860 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig14.3360.1prot_S-ischiensis_contig14.3360.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig14 2201309..2201860 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig14.3360.1

>prot_S-ischiensis_contig14.3360.1 ID=prot_S-ischiensis_contig14.3360.1|Name=mRNA_S-ischiensis_contig14.3360.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=184bp
MPAPSCMLSPSPTPSWSDSGARGAGFPGGSTFPSAFGWAPPPPRLPPPPR
PLGKPTGLRRWSGLLSAGDDRPSFPEACALPSGVRSSKPSSVRRSAPLAP
PPGYSPDDDGYCVLWLALISVLSYWFCEPAALVKPPPLVYAPSARESSSV
RGGSAGLSPWASPAPLLSPTTALSGALSASGGTP
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mRNA from alignment at S-ischiensis_contig14:2201278..2201860+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig14.3360.1 ID=mRNA_S-ischiensis_contig14.3360.1|Name=mRNA_S-ischiensis_contig14.3360.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=583bp|location=Sequence derived from alignment at S-ischiensis_contig14:2201278..2201860+ (Schizocladia ischiensis KU_0333)
GCCGTCGTAGTCAGTCCCGCCCCCACCGCCAATGCCCGCACCGTCGTGCA
TGCTGTCGCCCAGTCCCACGCCGTCGTGGTCCGATTCTGGCGCCCGCGGG
GCAGGGTTTCCCGGTGGCTCCACGTTCCCTTCGGCGTTTGGGTGGGCACC
CCCGCCCCCCCGCCTGCCGCCGCCGCCGCGTCCGTTGGGCAAGCCCACGG
GGCTTCGCCGCTGGTCCGGGCTATTGTCCGCGGGTGACGACCGTCCGTCG
TTCCCAGAGGCGTGCGCGCTGCCGTCGGGCGTGCGCTCCTCAAAGCCCTC
CTCGGTCCGGAGATCCGCCCCCCTCGCGCCGCCGCCAGGGTACTCACCAG
ACGATGATGGGTACTGCGTGTTGTGGCTGGCGCTCATCAGTGTGCTGTCG
TACTGGTTTTGCGAACCCGCGGCACTCGTGAAGCCACCGCCGCTCGTGTA
CGCGCCTTCCGCGAGGGAGTCGTCGTCTGTGCGTGGTGGGTCCGCCGGGC
TGTCCCCCTGGGCGTCCCCAGCGCCGCTGTTGTCACCGACCACGGCACTG
AGTGGTGCATTATCTGCGTCGGGCGGCACCCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig14:2201278..2201860+

>mRNA_S-ischiensis_contig14.3360.1 ID=mRNA_S-ischiensis_contig14.3360.1|Name=mRNA_S-ischiensis_contig14.3360.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1104bp|location=Sequence derived from alignment at S-ischiensis_contig14:2201278..2201860+ (Schizocladia ischiensis KU_0333)
ATGCCCGCACCGTCGTGCATGCTGTCGCCCAGTCCCACGCCGTCGTGGTC
CGATTCTGGCGCCCGCGGGGCAGGGTTTCCCGGTGGCTCCACGTTCCCTT
CGGCGTTTGGGTGGGCACCCCCGCCCCCCCGCCTGCCGCCGCCGCCGCGT
CCGTTGGGCAAGCCCACGGGGCTTCGCCGCTGGTCCGGGCTATTGTCCGC
GGGTGACGACCGTCCGTCGTTCCCAGAGGCGTGCGCGCTGCCGTCGGGCG
TGCGCTCCTCAAAGCCCTCCTCGGTCCGGAGATCCGCCCCCCTCGCGCCG
CCGCCAGGGTACTCACCAGACGATGATGGGTACTGCGTGTTGTGGCTGGC
GCTCATCAGTGTGCTGTCGTACTGGTTTTGCGAACCCGCGGCACTCGTGA
AGCCACCGCCGCTCGTGTACGCGCCTTCCGCGAGGGAGTCGTCGTCTGTG
CGTGGTGGGTCCGCCGGGCTGTCCCCCTGGGCGTCCCCAGCGCCGCTGTT
GTCACCGACCACGGCACTGAGTGGTGCATTATCTGCGTCGGGCGGCACCC
CCATGCCCGCACCGTCGTGCATGCTGTCGCCCAGTCCCACGCCGTCGTGG
TCCGATTCTGGCGCCCGCGGGGCAGGGTTTCCCGGTGGCTCCACGTTCCC
TTCGGCGTTTGGGTGGGCACCCCCGCCCCCCCGCCTGCCGCCGCCGCCGC
GTCCGTTGGGCAAGCCCACGGGGCTTCGCCGCTGGTCCGGGCTATTGTCC
GCGGGTGACGACCGTCCGTCGTTCCCAGAGGCGTGCGCGCTGCCGTCGGG
CGTGCGCTCCTCAAAGCCCTCCTCGGTCCGGAGATCCGCCCCCCTCGCGC
CGCCGCCAGGGTACTCACCAGACGATGATGGGTACTGCGTGTTGTGGCTG
GCGCTCATCAGTGTGCTGTCGTACTGGTTTTGCGAACCCGCGGCACTCGT
GAAGCCACCGCCGCTCGTGTACGCGCCTTCCGCGAGGGAGTCGTCGTCTG
TGCGTGGTGGGTCCGCCGGGCTGTCCCCCTGGGCGTCCCCAGCGCCGCTG
TTGTCACCGACCACGGCACTGAGTGGTGCATTATCTGCGTCGGGCGGCAC
CCCC
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