mRNA_S-ischiensis_contig14.3342.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig14.3342.1
Unique NamemRNA_S-ischiensis_contig14.3342.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig14contigS-ischiensis_contig14:2043380..2044976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size457
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.8872335-CDS-S-ischiensis_contig14:2043379..20435681622815702.8872335-CDS-S-ischiensis_contig14:2043379..2043568Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2043380..2043568 +
1695739862.461921-CDS-S-ischiensis_contig14:2043379..20435681695739862.461921-CDS-S-ischiensis_contig14:2043379..2043568Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2043380..2043568 +
1622815702.8979344-CDS-S-ischiensis_contig14:2044710..20449741622815702.8979344-CDS-S-ischiensis_contig14:2044710..2044974Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2044711..2044974 +
1695739862.4705422-CDS-S-ischiensis_contig14:2044710..20449741695739862.4705422-CDS-S-ischiensis_contig14:2044710..2044974Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 2044711..2044974 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig14.3342.1prot_S-ischiensis_contig14.3342.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig14 2043380..2044974 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig14.3342.1

>prot_S-ischiensis_contig14.3342.1 ID=prot_S-ischiensis_contig14.3342.1|Name=mRNA_S-ischiensis_contig14.3342.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=151bp
LPHLCEEHDERTAEGRLTAAAAAAAAVAAPAVVARVRGLWARLREAEQGR
LEAEGRARAVQEELNSLKATTASLRHRILELEEAPATTAATSAHDTVSLP
PDAQTPSRIPRPRAGAGAAMAAAAAAVTVPDTSTMTETRGEREQRGWKQR
Q
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mRNA from alignment at S-ischiensis_contig14:2043380..2044976+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig14.3342.1 ID=mRNA_S-ischiensis_contig14.3342.1|Name=mRNA_S-ischiensis_contig14.3342.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1597bp|location=Sequence derived from alignment at S-ischiensis_contig14:2043380..2044976+ (Schizocladia ischiensis KU_0333)
CTCCCTCATCTCTGTGAAGAACATGACGAGCGAACGGCGGAGGGCCGCCT
GACGGCGGCGGCGGCGGCGGCAGCGGCGGTGGCAGCCCCGGCTGTTGTGG
CTCGTGTGCGGGGGCTTTGGGCGCGTTTGCGGGAGGCAGAACAAGGGAGA
CTGGAGGCGGAAGGCAGGGCCCGGGCAGTGCAGGAGGAGGTACGTGCATA
AGTACCAGTGATGGAATATCGATCAGTACGTAGTTATCGACCTCACTGAT
TTTGTGGGTGGCGCTACTAGCTACTTGGATTTGGTGTGAGTCAAATTATT
GAATATCGACTATCGATAGATATATGCTGAAGTAGATCAGTACCGGGGGG
GCAGAACGAGGGAGGCTGCAGGCAGAGGGCAGGGCCCGGGCACTGCAGGA
GGGGGTACGTGCCTGTATACCGGATGATATCATACTTCGCGCACAAATCA
CATCACACAACGTCACATCACCATCCGCCCAGTCTGTGAGGGGAAACGGC
ACTGCAGTGCAGCGCGTTGACCCCGTATGCCCACACCAAAATGCCCTACC
AGCACCCACATCCCCTAAACGGGACAACTGCTAATACGAGAGCAGTCAAT
CTCAGACGTGCGATTGTACCTCGTTGCAGCGTATACGAATCACACCCACA
TCCCCATCGCCCATTTTCTTGTACTGCGGTCCCGCCCAGGGGGGTAAGGT
CAGACTTGGCCCGCTCTCGCTGACGGAGGCGCGGAGTGTAACTATCCTAT
GACCTGGCGTACATACCACAGTTGAAGATGTTCCATCAGAGGCAACCGTT
TTGACCCGCAGCAAGGTGCACATGCACACATCCCCACCGTTCAGTGCACA
GCTTAGGCAAAAGGGTTAAACGCTGTGTGCCCACGCTTCCCATTCAGCGC
CTTTCGGCCCACCCACCCCTGCGCCCCCCCCCCTGGTGATGGAATATTCC
AAGCAAATCAACATATTTATCGACAGTGCTGATCTGTACATCTATCGATA
GTTGGTATTCGATAGTTTGACCCACACTAAATCCAAGTAGTTAGCAACGC
CACCCACAACATCAGTTGAGCCCGATAACTATGTACCGATCGATATTCTA
TAGTGATGGAATATGCAAGCAAATCAACATATATATCGACAGTGCTGATA
TGTACATCTATCGATAGTTGATATTCGATAGTTTGACCCACACTAAATCC
AAGTAGTTAGCAACGCCACCCACAACATCAGTCGAGCCCGATAACTATGT
ACCGATCGATAGAAACATCGCTGCCCCCCCTCGGCTTTGCCCACTTGCCC
CCCCACCCCACCCACCCACGCCTTCCACCAGCTGAACTCCCTCAAAGCCA
CCACAGCAAGCCTCCGCCACCGGATTCTGGAGCTAGAAGAGGCCCCGGCA
ACAACGGCAGCCACTTCTGCCCACGACACAGTGAGTCTCCCTCCAGACGC
CCAAACCCCTTCTCGCATCCCAAGACCGAGGGCGGGGGCAGGGGCAGCAA
TGGCGGCGGCGGCGGCGGCGGTGACAGTTCCAGACACCTCCACCATGACG
GAAACCCGAGGCGAGCGGGAGCAGCGGGGTTGGAAGCAGCGGCAGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig14:2043380..2044976+

>mRNA_S-ischiensis_contig14.3342.1 ID=mRNA_S-ischiensis_contig14.3342.1|Name=mRNA_S-ischiensis_contig14.3342.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=906bp|location=Sequence derived from alignment at S-ischiensis_contig14:2043380..2044976+ (Schizocladia ischiensis KU_0333)
CTCCCTCATCTCTGTGAAGAACATGACGAGCGAACGGCGGAGGGCCGCCT
GACGGCGGCGGCGGCGGCGGCAGCGGCGGTGGCAGCCCCGGCTGTTGTGG
CTCGTGTGCGGGGGCTTTGGGCGCGTTTGCGGGAGGCAGAACAAGGGAGA
CTGGAGGCGGAAGGCAGGGCCCGGGCAGTGCAGGAGGAGCTCCCTCATCT
CTGTGAAGAACATGACGAGCGAACGGCGGAGGGCCGCCTGACGGCGGCGG
CGGCGGCGGCAGCGGCGGTGGCAGCCCCGGCTGTTGTGGCTCGTGTGCGG
GGGCTTTGGGCGCGTTTGCGGGAGGCAGAACAAGGGAGACTGGAGGCGGA
AGGCAGGGCCCGGGCAGTGCAGGAGGAGCTGAACTCCCTCAAAGCCACCA
CAGCAAGCCTCCGCCACCGGATTCTGGAGCTAGAAGAGGCCCCGGCAACA
ACGGCAGCCACTTCTGCCCACGACACAGTGAGTCTCCCTCCAGACGCCCA
AACCCCTTCTCGCATCCCAAGACCGAGGGCGGGGGCAGGGGCAGCAATGG
CGGCGGCGGCGGCGGCGGTGACAGTTCCAGACACCTCCACCATGACGGAA
ACCCGAGGCGAGCGGGAGCAGCGGGGTTGGAAGCAGCGGCAGCTGAACTC
CCTCAAAGCCACCACAGCAAGCCTCCGCCACCGGATTCTGGAGCTAGAAG
AGGCCCCGGCAACAACGGCAGCCACTTCTGCCCACGACACAGTGAGTCTC
CCTCCAGACGCCCAAACCCCTTCTCGCATCCCAAGACCGAGGGCGGGGGC
AGGGGCAGCAATGGCGGCGGCGGCGGCGGCGGTGACAGTTCCAGACACCT
CCACCATGACGGAAACCCGAGGCGAGCGGGAGCAGCGGGGTTGGAAGCAG
CGGCAG
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