mRNA_S-ischiensis_contig14.3327.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig14.3327.1 vs. uniprot
Match: D8LFC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFC9_ECTSI) HSP 1 Score: 360 bits (925), Expect = 4.770e-112 Identity = 171/267 (64.04%), Postives = 213/267 (79.78%), Query Frame = 1
Query: 43 RKWTQDGTRYPALPGVAITYVNGIFHNRTDWEQLSSQLQQIFGHEVRAFYNPTSGWWIADASRAGYHLVRKPNDDSVAQALAEHLAAAVSDVGPKGRVLHLAHSGGALLTYLAAKYHLSPEQAAQIDVVTFGGARSLTRKYFSGRAVNYYARNDPLVHLDRRANSVMKSTRNTKYEQ-----------VVAKHNTTFVFLEGKARHAIRDHSLEGPTYMRALRSEAKAFRRRHFGPLSPMTWGYESSLLRVIRKKAAEATGVHDFFT 810
R + DG R+PA GV ITY+NGIFH+ +WE ++ QLQ +FGHEVR+FYNP+SGWWI DAS+AGYH++RKP + ++AQAL +HLA AV DVG +GRVLH+AHSGGAL+TYLAA++HL+ Q +IDVVTFGGARS+TRKYFSGR VNYYARNDPLV LDRRA +MK T NTK+++ + KHNTTFVFLEG+AR + DHSLEGPTY AL EAKAFRR HFGPLSP++W Y+ S+LR++RKK A+ +G+HDFF+
Sbjct: 33 RHSSTDGRRWPANDGVVITYINGIFHSVPEWESITQQLQALFGHEVRSFYNPSSGWWITDASKAGYHMLRKPANHTIAQALGDHLAQAVEDVG-RGRVLHIAHSGGALITYLAAQHHLTRRQRDKIDVVTFGGARSITRKYFSGRVVNYYARNDPLVKLDRRAAELMKLTNNTKFQEGARRTKNGIWKINEKHNTTFVFLEGRARQFVLDHSLEGPTYQHALMKEAKAFRRAHFGPLSPLSWDYDQSILRLVRKKVAQLSGLHDFFS 298
BLAST of mRNA_S-ischiensis_contig14.3327.1 vs. uniprot
Match: A0A6H5K5Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Y0_9PHAE) HSP 1 Score: 335 bits (860), Expect = 1.780e-102 Identity = 168/306 (54.90%), Postives = 211/306 (68.95%), Query Frame = 1
Query: 43 RKWTQDGTRYPALPGVAITYVNGIFHNRTDWEQLSSQLQQIFGHEVRAFYNPTSGWWIADASRAGYHLVRKPNDDSVAQALAEHLAAAVSDVGPKGRVLHLAHSGGALLTYLAAKYHLSPEQAAQIDVVTFGGARSLTRKYFSGRA------------------------------------VNYYARNDPLVHLDRRANSVMKSTRNTKYEQVVAKHNTTFVFLEGKARHAIRDHSLEGPTYMRALRSEAKAFRRR--------------HFGPLSPMTWGYESSLLRVIRKKAAEATGVHDFFT 810
R + DG R+PA GV ITY+NGIFH+ +WE ++ QLQ +FGHEVR+FYNP+SGWWI DAS+AGYH++RKP + ++AQAL +HLA AV DVG +GRVLH+AHSGGAL+TYLAA++HL+ Q +IDVVTFGGARS+TRKYFSGR VNYYARNDPLV LDRRA +MK T NTK++++ KHNTTFVFLEG+AR + DHSLEGPTY AL EAK +R HFGPLSP++W Y+ S+LR++RKK A+ +G+HDFF+
Sbjct: 28 RHSSTDGRRWPANDGVVITYINGIFHSVPEWESITQQLQALFGHEVRSFYNPSSGWWITDASKAGYHMLRKPANHTIAQALGDHLAQAVEDVG-RGRVLHIAHSGGALITYLAAQHHLTRRQRDKIDVVTFGGARSITRKYFSGRVGEAASLLFLTLILGCSLTPVLLFLLLTHRRLLVLFPVNYYARNDPLVKLDRRAAELMKLTNNTKFQEINEKHNTTFVFLEGRARQFVLDHSLEGPTYQHALMKEAKGKKREDLGVQRTVCWGEWAHFGPLSPLSWDYDQSILRLVRKKVAQLSGLHDFFS 332
BLAST of mRNA_S-ischiensis_contig14.3327.1 vs. uniprot
Match: A0A836CL88_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL88_9STRA) HSP 1 Score: 299 bits (765), Expect = 7.370e-91 Identity = 161/292 (55.14%), Postives = 197/292 (67.47%), Query Frame = 1
Query: 4 GYGWCSLDWGWDGRKWTQDGTRYPA-----LPGVA-----------ITYVNGIFHNRTDWEQLSSQLQQIFGHEVRAFYNPTSGWWIADASRAGYHLVRKPNDDSVAQALAEHLAAAVSDVGPKGRVLHLAHSGGALLTYLAAKYHLSPEQAAQIDVVTFGGARSLTRKYFSGRAVNYYARNDPLVHLDRRANSVMKSTRNTKYEQVV-AKHNTTFVFLEGKARHAIRDHSLEGPTYMRALRSEAKAFRRRHFGPLSPMTW-GYESSLLRVIRKKAAEATGVHDFFTDWPGV 825
GYGW +L+W W T + A LPG IT+VNGIFH+ DW++++ QL IF EVRAFYNP++GWW+AD + AG+ LVR+ + SVA+ALA HL A+ GP+GRVLHLAHSGGAL+TYLAAKYHL + A+IDVVTFGGARS+TRKYFSGR VNYYARNDPLV LDRRA S+MK N Y++VV AKHNTTFVF+EG R DHSLEGPTY AL EA+ R SP+ Y +S +R RK+AA ATG+H F+ + G+
Sbjct: 23 GYGWSTLEWQWPTVNTTTIASYINANITTLLPGTTPVPPPVPSRQIITFVNGIFHSEEDWQRITEQLDDIFKQEVRAFYNPSTGWWVADLAGAGFDLVRRSDTHSVARALALHLREALELSGPRGRVLHLAHSGGALMTYLAAKYHLRAAERARIDVVTFGGARSITRKYFSGRTVNYYARNDPLVILDRRAASLMKGAANETYQEVVYAKHNTTFVFMEGMTRSPFMDHSLEGPTYKIALEIEARNLLDRARESPSPLPGQAYATSWVRAARKRAAAATGLHSFWDETLGL 314
BLAST of mRNA_S-ischiensis_contig14.3327.1 vs. uniprot
Match: A0A482SJI3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJI3_9ARCH) HSP 1 Score: 264 bits (675), Expect = 5.490e-82 Identity = 130/246 (52.85%), Postives = 175/246 (71.14%), Query Frame = 1
Query: 82 PGVAITYVNGIFHNRTDWEQLSSQLQQIFGHEVRAFYNPTSGWWIADASRAGYHLVRKPNDDSVAQALAEHLAAAVSDVGPKGRVLHLAHSGGALLTYLAAKYHLSPEQAAQIDVVTFGGARSLTRKYFSGRAVNYYARNDPLVHLDRRANSVMKSTRNTKYEQVVA-KHNTTFVFLEGKARHAIRDHSLEGPTYMRALRSEAKAFRRRHFGPLSPMTWGYESSLLRVIRKKAAEATGVHDFFTDW 816
P IT+VNGI+H+ DW +S+ + ++F EVR FYNP+SG W+ DA+RAG LV +P+D +A+ LA HL A++DV PKGRVLHLAHSGGA+LTYLAAK+HL+ ++ ++ID+VTFG +S+TRKYF GR NYYARNDPL +D+R N ++K RN Y ++ KHNTTFVFL +A H I DHS+ GPTY A+ EA+ F+ R + M E ++R++RK+AA ATG H F+ DW
Sbjct: 81 PATIITFVNGIYHSIDDWRNISADISELFNAEVRPFYNPSSGVWVKDATRAGIDLVMRPSDQDLAKGLANHLRLALNDVEPKGRVLHLAHSGGAILTYLAAKHHLTTQETSRIDIVTFGAGKSITRKYFKGRVYNYYARNDPLTIVDKRTNQLIKRVRNHTYHEIRDHKHNTTFVFLAPQANHPIVDHSMLGPTYRYAMALEAEQFKDRL--KMFLMLKAKEKDVIRLLRKQAANATGFHHFW-DW 323
BLAST of mRNA_S-ischiensis_contig14.3327.1 vs. uniprot
Match: K8YTC9_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YTC9_NANGC) HSP 1 Score: 246 bits (628), Expect = 3.910e-75 Identity = 128/277 (46.21%), Postives = 179/277 (64.62%), Query Frame = 1
Query: 43 RKWTQDGTRY--PAL-PGVAITYVNGIFHNRTDWEQLSSQLQQIFGHEVRAFYNPTSGWWIADASRAGYHLVRKPNDDSVAQALAEHLAAAVSDVGPKGRVLHLAHSGGALLTYLAAKYHLSPEQAAQIDVVTFGGARSLTRKYFSGRAVNYYARNDPLVHLDRRANSVMKSTRNTKY--EQVVAKHNTTFVFLEGKARHAIRDHSLEGPTYMRALRSEAKAFRRRHFGPL--------SPMTWGYESSLLRVIRKKAAEATGVHDFFTDWPGVRRF 834
++W +D R+ P+L P +A+T+VNGI + + E+ + L +FG VR +YNP+ GWW+ D +R Y +R P +D V LA HL+ + +VGPKGRV+HLAHSGGALLTYL AKYHL +IDV+ FGGARS+T+KYF G+A NYYARNDP++ ++RRA ++M+ N E + KHNT+FVFL+G+A A+ DHS GPTY+ AL EA FRR ++ P P G+ R +RK+ A ATG H++F++ VR +
Sbjct: 51 KEWVRDTWRWGEPSLNPSIALTWVNGINYTNEEMEEQARFLSSLFGCRVRPYYNPSLGWWLRDLTRVSYMYIRSPTEDPVVTGLARHLSRVLLEVGPKGRVIHLAHSGGALLTYLVAKYHLKETDRRRIDVLNFGGARSITQKYF-GKATNYYARNDPILLVNRRAMNLMQQLLNESADGEVIYLKHNTSFVFLQGRAGDALTDHSFIGPTYLMALNKEAAVFRRSYYRPYWLDGLIIAKPPDMGWA----RFVRKRVAAATGFHNYFSNSTLVRLY 322
BLAST of mRNA_S-ischiensis_contig14.3327.1 vs. uniprot
Match: W7U1H3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1H3_9STRA) HSP 1 Score: 246 bits (628), Expect = 3.880e-70 Identity = 128/277 (46.21%), Postives = 179/277 (64.62%), Query Frame = 1
Query: 43 RKWTQDGTRY--PAL-PGVAITYVNGIFHNRTDWEQLSSQLQQIFGHEVRAFYNPTSGWWIADASRAGYHLVRKPNDDSVAQALAEHLAAAVSDVGPKGRVLHLAHSGGALLTYLAAKYHLSPEQAAQIDVVTFGGARSLTRKYFSGRAVNYYARNDPLVHLDRRANSVMKSTRNTKY--EQVVAKHNTTFVFLEGKARHAIRDHSLEGPTYMRALRSEAKAFRRRHFGPL--------SPMTWGYESSLLRVIRKKAAEATGVHDFFTDWPGVRRF 834
++W +D R+ P+L P +A+T+VNGI + + E+ + L +FG VR +YNP+ GWW+ D +R Y +R P +D V LA HL+ + +VGPKGRV+HLAHSGGALLTYL AKYHL +IDV+ FGGARS+T+KYF G+A NYYARNDP++ ++RRA ++M+ N E + KHNT+FVFL+G+A A+ DHS GPTY+ AL EA FRR ++ P P G+ R +RK+ A ATG H++F++ VR +
Sbjct: 51 KEWVRDTWRWGEPSLNPSIALTWVNGINYTNEEMEEQARFLSSLFGCRVRPYYNPSLGWWLRDLTRVSYMYIRSPTEDPVVTGLARHLSRVLLEVGPKGRVIHLAHSGGALLTYLVAKYHLKETDRRRIDVLNFGGARSITQKYF-GKATNYYARNDPILLVNRRAMNLMQQLLNESADGEVIYLKHNTSFVFLQGRAGDALTDHSFIGPTYLMALNKEAAVFRRSYYRPYWLDGLIIAKPPDMGWA----RFVRKRVAAATGFHNYFSNSTLVRLY 322
BLAST of mRNA_S-ischiensis_contig14.3327.1 vs. uniprot
Match: A0A7S4PRT6_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PRT6_GUITH) HSP 1 Score: 128 bits (321), Expect = 1.640e-29 Identity = 94/272 (34.56%), Postives = 136/272 (50.00%), Query Frame = 1
Query: 88 VAITYVNGIFHNRTDWEQLSSQLQQIFGHEVRAFYNPTSGWWIADASRAGYHLVRKPNDDSVAQALAEHLAAAVSDVGPKGRVLHLAHSGGALLTYLAAKYHLSPEQAAQIDVVTFGGARSLTRKYFSGRAVNYYARNDPLVHLDRRANSVMKST---------------RNTKYEQ------------------VVAKHNTTFVFLEGKA--RHAIRDHSLEGPTYMRALRSEAKAFRRRHFGPLSPMTWGYESSLLRVIRKKAAEATGVH 798
V +TY+NGI ++ D +S + +FG + F+N T+G +AD S+A + V LAEHL + +VG G V+H+AHS GAL+T+L K+ LS Q A+I V+ FGGA SLT + G VNYY+ N+P++++D RA+ +K RN ++ V + T+F+FL A R + DHS G TYM+ALR EA+ FR +HF S + E+S R A G H
Sbjct: 2 VRLTYINGIRTDKRDCLTAASVISGLFGCDCYPFWNKTAGA-LADLSQAARQKIFNVETSEVKD-LAEHLKLHLREVGKDGIVVHIAHSQGALITFLCKKF-LSVAQRARILVIVFGGASSLTNDDY-GDTVNYYSTNEPMLYIDARASKALKKLEAEGVASAQHGILLRRNASDDEGRKWFSFIGKSPAFPPGVQVEQDGTSFIFLHPVAGGRFGLVDHSFLGATYMKALRFEAEKFRTQHFSWWSRLVRSIETSEFMRSRSSQMSAPGDH 269
BLAST of mRNA_S-ischiensis_contig14.3327.1 vs. uniprot
Match: A0A7S3GYT0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GYT0_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.110e-25 Identity = 53/100 (53.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query: 88 VAITYVNGIFHNRTDWEQLSSQLQQIFGHEVRAFYNPTSGWWIADASRAGYHLVRKPNDDSVAQALAEHLAAAVSDVGPK-GRVLHLAHSGGALLTYLAA 384
+ +T+VNGI+H+ + +L+ L+ +F +VR FYNP+SG W+ DA +AG+ LV +PND +A+ LAEHL +A+ +V PK GRVLH+AHSGGA++TYLAA
Sbjct: 92 MVLTFVNGIYHSEKEVRELAIYLRCMFRSDVRTFYNPSSGSWVKDAYKAGFELVLRPNDLILAKQLAEHLRSALREVHPKKGRVLHIAHSGGAIITYLAA 191
BLAST of mRNA_S-ischiensis_contig14.3327.1 vs. uniprot
Match: A0A7S2XT02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XT02_9STRA) HSP 1 Score: 108 bits (269), Expect = 5.630e-23 Identity = 75/224 (33.48%), Postives = 120/224 (53.57%), Query Frame = 1
Query: 79 LPGVAITYVNGIFHNRTDWEQLSSQLQQIFG-HEVRAFYNPTSGW-------WIADASRAGYHLVRKPNDDSVAQALAEHLAAAVSDVGPKGRVLHLAHSGGALLTYLAAKYHLSPEQAAQIDVVTFGGARSLTRKYFSG--RAVNYYARNDPLVHLDRRANSVMKSTRNTKYEQVVAKHNTTFVFLEGKARHAIRDHSLEGPTYMRALRSEAKAFRRRHFGPL 720
+P +T+VNGI HN + + +FG +V +NPT+ +I D ++AG H + + AL HL A+ VG +GRV+H+AHS GAL+T LA + S + ++++V+ FGG + + F R VNYY+ NDPL++++ RA + S +++ FVFL + I +HSL GPTYM+AL E + F+++ P+
Sbjct: 48 VPRSRLTWVNGIGHNLQHMGEGVVDISSLFGGKKVEFCHNPTAMTSDDDYVGYIGDLTQAGIHKWGRITGE--VDALVIHLKQALKAVGSRGRVVHIAHSQGALITNLALR-RFSESELSRMEVLCFGGGAVIGKADFPALRRVVNYYSVNDPLLNINPRAVQALNSG-------FTFQNDPEFVFLTPRVSDPIIEHSLTGPTYMQALAWEGQRFQQQFQSPV 261
BLAST of mRNA_S-ischiensis_contig14.3327.1 vs. uniprot
Match: A0A7S2KM92_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KM92_9STRA) HSP 1 Score: 102 bits (253), Expect = 7.050e-21 Identity = 77/242 (31.82%), Postives = 122/242 (50.41%), Query Frame = 1
Query: 49 WTQDGTRYPALPG-VAITYVNGIFHNRTDWEQLSSQLQQIFGH-EVRAFYNPTSGW-------WIADASRAGYHLVRK---PNDDSVAQALAEHLAAAVSDVGPKGRVLHLAHSGGALLTYLAAKYHLSPEQAAQIDVVTFGGARSL-TRKYFSGRAVNYYARNDPLVHLDRRANSVMKS--TRNTKYEQVVAKHNTTFVFLEGKARHAIRDHSLEGPTYMRALRSEAKAFRRRHFGPLSPM 729
WT LP +T+VNGI H + + IFG +V +NP+S ++ D +A H++ P DS L EHL A+ VG GRV+H+AHS G+++T+LAAK L PE+ +I++++FGGA ++ T ++ R +NYY+ NDP++++ A +KS + +Q + +FL + DH L PTY+ AL E + ++ PL M
Sbjct: 19 WTAHSCYGKLLPRRTKLTWVNGIAHMPEHMSDPTFVISTIFGGVKVDYCHNPSSMTSESDYLGFVKDGIQASTHVMMSRFTPEVDS----LVEHLRDALKQVGRNGRVIHIAHSQGSVITWLAAK-RLKPEECKRIEIISFGGAATICTSEFPFARCINYYSVNDPILNVVPSAVKALKSGFSFGDGMQQEI-------IFLASRTGDPATDHGLLNPTYLEALVWEGQRYQSLFVSPLGQM 248 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig14.3327.1 >prot_S-ischiensis_contig14.3327.1 ID=prot_S-ischiensis_contig14.3327.1|Name=mRNA_S-ischiensis_contig14.3327.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=382bp SGYGWCSLDWGWDGRKWTQDGTRYPALPGVAITYVNGIFHNRTDWEQLSSback to top mRNA from alignment at S-ischiensis_contig14:1866835..1878007+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig14.3327.1 ID=mRNA_S-ischiensis_contig14.3327.1|Name=mRNA_S-ischiensis_contig14.3327.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=11173bp|location=Sequence derived from alignment at S-ischiensis_contig14:1866835..1878007+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig14:1866835..1878007+ >mRNA_S-ischiensis_contig14.3327.1 ID=mRNA_S-ischiensis_contig14.3327.1|Name=mRNA_S-ischiensis_contig14.3327.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2292bp|location=Sequence derived from alignment at S-ischiensis_contig14:1866835..1878007+ (Schizocladia ischiensis KU_0333)back to top |