mRNA_S-ischiensis_contig14.3322.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig14.3322.1
Unique NamemRNA_S-ischiensis_contig14.3322.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig14.3322.1 vs. uniprot
Match: A0A8J4GT81_9CHLO (L-ascorbate peroxidase n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4GT81_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 8.660e-14
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 GGPKIDMIYGRLTVTSHKSCPHDGNLPESRGPFRDGSTNPAQHVRKVFRRMGFNNQ 168
            GGPKI M YGR   TS + C  DG LP +  PF DGS NPA+H+R+VF RMG N++
Sbjct:  133 GGPKIPMRYGRKDATSSEQCVPDGRLPGAAHPFADGSANPAEHLRRVFGRMGLNDK 188
[Close]
BLAST of mRNA_S-ischiensis_contig14.3322.1 vs. uniprot
Match: A0A7S0WGX8_9CHLO (L-ascorbate peroxidase n=2 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WGX8_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 1.160e-13
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 GGPKIDMIYGRLTVTSHKSCPHDGNLPESRGPFRDGSTNPAQHVRKVFRRMGFNNQ 168
            GGPKI M YGR  V +   C  +GNLP +  PF DGS +PA+H+RKVF RMG N+Q
Sbjct:  147 GGPKIPMRYGRRDVETSDQCAKEGNLPAAAHPFPDGSVSPAEHLRKVFYRMGLNDQ 202
[Close]
BLAST of mRNA_S-ischiensis_contig14.3322.1 vs. uniprot
Match: A0A836CHX4_9STRA (Heme peroxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHX4_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.210e-13
Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 GGPKIDMIYGRLTVTSHKSCPHDGNLPESRGPFRDGSTNPAQHVRKVFRRMGFNNQ 168
            GGP+I M YGR+       CP +GNLP +  PF DGS +  +H+RKVF RMGFNNQ
Sbjct:  140 GGPRIAMRYGRVDAAGPDDCPVEGNLPGAGAPFGDGSKDAGEHLRKVFHRMGFNNQ 195
[Close]
BLAST of mRNA_S-ischiensis_contig14.3322.1 vs. uniprot
Match: D8U4R0_VOLCA (L-ascorbate peroxidase n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U4R0_VOLCA)

HSP 1 Score: 71.6 bits (174), Expect = 2.290e-13
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 GGPKIDMIYGRLTVTSHKSCPHDGNLPESRGPFRDGSTNPAQHVRKVFRRMGFNNQ 168
            GGPKI M YGR   TS + C  DG LP +  PF DGST+PA+H+R+VF RMG  +Q
Sbjct:  133 GGPKIPMRYGRKDATSPEQCVPDGRLPGAAHPFADGSTSPAEHLRRVFGRMGLTDQ 188
[Close]
BLAST of mRNA_S-ischiensis_contig14.3322.1 vs. uniprot
Match: A0A7S2V2W5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2W5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.400e-13
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 GGPKIDMIYGRLTVTSHKSCPHDGNLPESRGPFRDGSTNPAQHVRKVFRRMGFNNQ 168
            GGPKI M YGR+ V     C  +GNLP +  PF DG   P +H+RKVF RMGFN+Q
Sbjct:  148 GGPKIPMKYGRVDVEDSSGCSPEGNLPGAAAPFDDGCNTPQEHLRKVFYRMGFNDQ 203
[Close]
BLAST of mRNA_S-ischiensis_contig14.3322.1 vs. uniprot
Match: A0A150GCN7_GONPE (L-ascorbate peroxidase n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GCN7_GONPE)

HSP 1 Score: 70.9 bits (172), Expect = 4.350e-13
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 GGPKIDMIYGRLTVTSHKSCPHDGNLPESRGPFRDGSTNPAQHVRKVFRRMGFNNQ 168
            GGPKI M YGR   TS   C  DGNLP +  PF DGS + A+H+R+VF RMG N+Q
Sbjct:  132 GGPKIPMRYGRKDATSPDQCSPDGNLPGAAHPFADGSADAAEHLRRVFYRMGLNDQ 187
[Close]
BLAST of mRNA_S-ischiensis_contig14.3322.1 vs. uniprot
Match: A0A6S9IPW2_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9IPW2_HETAK)

HSP 1 Score: 70.5 bits (171), Expect = 5.920e-13
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 GGPKIDMIYGRLTVTSHKSCPHDGNLPESRGPFRDGSTNPAQHVRKVFRRMGFNNQ 168
            GGP++ M+YGR  V S + C  +GNLP ++ PF DG+ +   H+R+VF RMGFN+Q
Sbjct:  140 GGPRVPMVYGRRDVASPEQCAQEGNLPGAKAPFGDGAKDAPTHLRRVFYRMGFNDQ 195
[Close]
BLAST of mRNA_S-ischiensis_contig14.3322.1 vs. uniprot
Match: A0A6S9GC78_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GC78_HETAK)

HSP 1 Score: 68.6 bits (166), Expect = 3.120e-12
Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    1 GGPKIDMIYGRLTVTSHKSCPHDGNLPESRGPFRDGSTNPAQHVRKVFRRMGFNNQ 168
            GGP I M YGR+     + C  +GNLP +  PF DG   P +H+RKVF RMGFN+Q
Sbjct:  146 GGPTIPMKYGRVDAQGPEDCSPEGNLPGAAAPFDDGCATPQEHIRKVFGRMGFNDQ 201
[Close]
BLAST of mRNA_S-ischiensis_contig14.3322.1 vs. uniprot
Match: A0A836BVX8_9CHLO (L-ascorbate peroxidase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BVX8_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 4.430e-12
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 GGPKIDMIYGRLTVTSHKSCPHDGNLPESRGPFRDGSTNPAQHVRKVFRRMGFNNQ 168
            GGPKI M YGR  +   + C  DGNLP +  PF DGS +PA H+RKVF RMG +++
Sbjct:  140 GGPKIPMRYGRKDLEGPEQCAPDGNLPGAAHPFADGSASPADHLRKVFYRMGLDDK 195
[Close]
BLAST of mRNA_S-ischiensis_contig14.3322.1 vs. uniprot
Match: A0A2V0P1K7_9CHLO (L-ascorbate peroxidase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P1K7_9CHLO)

HSP 1 Score: 67.8 bits (164), Expect = 5.680e-12
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 GGPKIDMIYGRLTVTSHKSCPHDGNLPESRGPFRDGSTNPAQHVRKVFRRMGFNNQ 168
            GGP I + YGRL   S + C  DG LP +  PF DGS +PA H+RKVF RMG N++
Sbjct:  143 GGPHIPLRYGRLDAESPEDCTPDGRLPAAGHPFGDGSKSPADHLRKVFNRMGLNDK 198
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J4GT81_9CHLO8.660e-1457.14L-ascorbate peroxidase n=3 Tax=Volvox TaxID=3066 R... [more]
A0A7S0WGX8_9CHLO1.160e-1357.14L-ascorbate peroxidase n=2 Tax=Chlamydomonas leios... [more]
A0A836CHX4_9STRA1.210e-1355.36Heme peroxidase n=1 Tax=Tribonema minus TaxID=3033... [more]
D8U4R0_VOLCA2.290e-1357.14L-ascorbate peroxidase n=1 Tax=Volvox carteri f. n... [more]
A0A7S2V2W5_9STRA2.400e-1355.36Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A150GCN7_GONPE4.350e-1357.14L-ascorbate peroxidase n=1 Tax=Gonium pectorale Ta... [more]
A0A6S9IPW2_HETAK5.920e-1350.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6S9GC78_HETAK3.120e-1251.79Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A836BVX8_9CHLO4.430e-1253.57L-ascorbate peroxidase n=1 Tax=Edaphochlamys debar... [more]
A0A2V0P1K7_9CHLO5.680e-1253.57L-ascorbate peroxidase n=1 Tax=Raphidocelis subcap... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig14contigS-ischiensis_contig14:1834489..1835310 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.1
Seed ortholog evalue3.5e-07
Seed eggNOG ortholog3067.XP_002953608.1
Preferred nameAPX7
KEGG rclassRC00092
KEGG koko:K00434
KEGG ReactionR00644
KEGG Pathwayko00053,ko00480,map00053,map00480
GOsGO:0000302,GO:0003674,GO:0003824,GO:0004130,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009056,GO:0009266,GO:0009409,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009631,GO:0009636,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010019,GO:0010033,GO:0016020,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0023052,GO:0031976,GO:0031984,GO:0033554,GO:0034357,GO:0034599,GO:0042221,GO:0042651,GO:0042737,GO:0042743,GO:0042744,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0055035,GO:0055114,GO:0065007,GO:0070887,GO:0071588,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1990748
EggNOG free text desc.Belongs to the peroxidase family
EggNOG OGs2QS7Q@2759,34HJK@3041,37I6A@33090,COG0685@1
EC1.11.1.11
COG Functional cat.E
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size168
Cds size150
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig14.3322.1prot_S-ischiensis_contig14.3322.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig14 1834489..1835292 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.3127413-CDS-S-ischiensis_contig14:1834488..18345181622815721.3127413-CDS-S-ischiensis_contig14:1834488..1834518Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 1834489..1834518 -
1695739874.7189527-CDS-S-ischiensis_contig14:1834488..18345181695739874.7189527-CDS-S-ischiensis_contig14:1834488..1834518Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 1834489..1834518 -
1622815721.3237529-CDS-S-ischiensis_contig14:1835172..18352921622815721.3237529-CDS-S-ischiensis_contig14:1835172..1835292Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 1835173..1835292 -
1695739874.7353745-CDS-S-ischiensis_contig14:1835172..18352921695739874.7353745-CDS-S-ischiensis_contig14:1835172..1835292Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 1835173..1835292 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.335295-UTR-S-ischiensis_contig14:1835292..18353101622815721.335295-UTR-S-ischiensis_contig14:1835292..1835310Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 1835293..1835310 -
1695739874.7483172-UTR-S-ischiensis_contig14:1835292..18353101695739874.7483172-UTR-S-ischiensis_contig14:1835292..1835310Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 1835293..1835310 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig14.3322.1

>prot_S-ischiensis_contig14.3322.1 ID=prot_S-ischiensis_contig14.3322.1|Name=mRNA_S-ischiensis_contig14.3322.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=50bp
MIYGRLTVTSHKSCPHDGNLPESRGPFRDGSTNPAQHVRKVFRRMGFNNQ
back to top

mRNA from alignment at S-ischiensis_contig14:1834489..1835310-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig14.3322.1 ID=mRNA_S-ischiensis_contig14.3322.1|Name=mRNA_S-ischiensis_contig14.3322.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=822bp|location=Sequence derived from alignment at S-ischiensis_contig14:1834489..1835310- (Schizocladia ischiensis KU_0333)
GGAGGCCCCAAGATCGACATGATCTACGGGAGGCTGACGGTCACGTCCCA
CAAATCCTGCCCGCACGACGGGAACCTTCCGGAATCCAGGGGGCCGTTCC
GGGATGGGAGTACCAACCCCGCCCAGCACGTCCGCAAGGTGCCTGGTGTG
ACAATCAATAATATAATAGCGTTCTATTCTTAATTTGAGTGGTATATAGG
TGGCGAGTTCCGGGCCCCGTGCCAAAAGGCTCGTCCCAAAAACAGGACTC
AACGAAGCCCTTCTTCCCCTCGCAAGGCGAGAATTCTTAAATGAAACAAC
TACTAATACGAGAACAGTCAATCGCACACACGTGCGATAGTACCTCTGCG
ATAGTACCCCGTTACAATTTATATGAATCACCAGTGCCTGGTGCTTTTGC
TTGATTGACGCTCTGCTTTGCTTGACGCCTTCCGGAGGACGACGACGCTT
TTGTTTTGCTTGGCGCTTTTCGGAGGGCAACGGCGCACTCCTTACACTGC
TACTTTGAAGCAACGCCGTACAGGAGTACTTGCAGGCTTCTAGCGAGGCA
TGAGTGCACCGCCATCCTCCAAAAACTGAAGCCCTTTCTCTCTCCCCGCT
TGCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCTCTCTCTCTCCCTCTCT
CTCTCCCCCCCTCCCCCCCCCCCCCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCCTCTCTCCCTCCCTCCCCCCCTCTCCCTCTCTCTATCTCTCTCTC
TCTCTCCCTCCCCCCCCCCCCCTTCTCTCCCACTCTGCCCAGGTCTTCCG
CCGCATGGGCTTCAACAACCAG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig14:1834489..1835310-

>mRNA_S-ischiensis_contig14.3322.1 ID=mRNA_S-ischiensis_contig14.3322.1|Name=mRNA_S-ischiensis_contig14.3322.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=300bp|location=Sequence derived from alignment at S-ischiensis_contig14:1834489..1835310- (Schizocladia ischiensis KU_0333)
ATGATCTACGGGAGGCTGACGGTCACGTCCCACAAATCCTGCCCGCACGA
CGGGAACCTTCCGGAATCCAGGGGGCCGTTCCGGGATGGGAGTACCAACC
CCGCCCAGCACGTCCGCAAGATGATCTACGGGAGGCTGACGGTCACGTCC
CACAAATCCTGCCCGCACGACGGGAACCTTCCGGAATCCAGGGGGCCGTT
CCGGGATGGGAGTACCAACCCCGCCCAGCACGTCCGCAAGGTCTTCCGCC
GCATGGGCTTCAACAACCAGGTCTTCCGCCGCATGGGCTTCAACAACCAG
back to top