mRNA_S-ischiensis_contig14.3237.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig14.3237.1
Unique NamemRNA_S-ischiensis_contig14.3237.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig14contigS-ischiensis_contig14:922519..922927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size402
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.1917737-UTR-S-ischiensis_contig14:922518..9225251622815706.1917737-UTR-S-ischiensis_contig14:922518..922525Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 922519..922525 +
1695739864.2095017-UTR-S-ischiensis_contig14:922518..9225251695739864.2095017-UTR-S-ischiensis_contig14:922518..922525Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 922519..922525 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.2106361-CDS-S-ischiensis_contig14:922525..9229271622815706.2106361-CDS-S-ischiensis_contig14:922525..922927Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 922526..922927 +
1695739864.2184582-CDS-S-ischiensis_contig14:922525..9229271695739864.2184582-CDS-S-ischiensis_contig14:922525..922927Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 922526..922927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig14.3237.1prot_S-ischiensis_contig14.3237.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig14 922526..922927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig14.3237.1

>prot_S-ischiensis_contig14.3237.1 ID=prot_S-ischiensis_contig14.3237.1|Name=mRNA_S-ischiensis_contig14.3237.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=134bp
MQHQPFARVGGCTEAQQVPLPPPLQMQHQPFARSGGYTEVQQVPPPPPLQ
MQHQPFARFRGYMEAQQVLPPPPLQIQRQPFVAHAGGCTEAQQVVGGGLP
ALAGAPNLPVLAVPVAPAVPPTWLDSHNVYHIAH
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mRNA from alignment at S-ischiensis_contig14:922519..922927+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig14.3237.1 ID=mRNA_S-ischiensis_contig14.3237.1|Name=mRNA_S-ischiensis_contig14.3237.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=409bp|location=Sequence derived from alignment at S-ischiensis_contig14:922519..922927+ (Schizocladia ischiensis KU_0333)
GCTGCAGATGCAACACCAGCCGTTTGCCCGCGTCGGGGGCTGTACAGAGG
CGCAGCAGGTGCCACTGCCACCCCCGCTGCAGATGCAACACCAGCCGTTT
GCCCGCTCCGGGGGCTATACAGAGGTGCAGCAGGTGCCACCGCCACCCCC
GCTGCAGATGCAACACCAGCCATTTGCCCGCTTCAGGGGCTATATGGAGG
CGCAGCAGGTGCTACCGCCACCCCCGCTGCAGATTCAACGCCAGCCATTT
GTTGCCCACGCCGGGGGCTGTACAGAGGCGCAGCAGGTAGTGGGGGGGGG
TCTCCCGGCCCTGGCAGGCGCCCCCAACCTGCCCGTGCTTGCAGTGCCTG
TGGCGCCTGCAGTGCCGCCCACATGGCTTGACAGTCACAACGTCTACCAC
ATCGCCCAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig14:922519..922927+

>mRNA_S-ischiensis_contig14.3237.1 ID=mRNA_S-ischiensis_contig14.3237.1|Name=mRNA_S-ischiensis_contig14.3237.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=804bp|location=Sequence derived from alignment at S-ischiensis_contig14:922519..922927+ (Schizocladia ischiensis KU_0333)
ATGCAACACCAGCCGTTTGCCCGCGTCGGGGGCTGTACAGAGGCGCAGCA
GGTGCCACTGCCACCCCCGCTGCAGATGCAACACCAGCCGTTTGCCCGCT
CCGGGGGCTATACAGAGGTGCAGCAGGTGCCACCGCCACCCCCGCTGCAG
ATGCAACACCAGCCATTTGCCCGCTTCAGGGGCTATATGGAGGCGCAGCA
GGTGCTACCGCCACCCCCGCTGCAGATTCAACGCCAGCCATTTGTTGCCC
ACGCCGGGGGCTGTACAGAGGCGCAGCAGGTAGTGGGGGGGGGTCTCCCG
GCCCTGGCAGGCGCCCCCAACCTGCCCGTGCTTGCAGTGCCTGTGGCGCC
TGCAGTGCCGCCCACATGGCTTGACAGTCACAACGTCTACCACATCGCCC
ACATGCAACACCAGCCGTTTGCCCGCGTCGGGGGCTGTACAGAGGCGCAG
CAGGTGCCACTGCCACCCCCGCTGCAGATGCAACACCAGCCGTTTGCCCG
CTCCGGGGGCTATACAGAGGTGCAGCAGGTGCCACCGCCACCCCCGCTGC
AGATGCAACACCAGCCATTTGCCCGCTTCAGGGGCTATATGGAGGCGCAG
CAGGTGCTACCGCCACCCCCGCTGCAGATTCAACGCCAGCCATTTGTTGC
CCACGCCGGGGGCTGTACAGAGGCGCAGCAGGTAGTGGGGGGGGGTCTCC
CGGCCCTGGCAGGCGCCCCCAACCTGCCCGTGCTTGCAGTGCCTGTGGCG
CCTGCAGTGCCGCCCACATGGCTTGACAGTCACAACGTCTACCACATCGC
CCAC
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