mRNA_S-ischiensis_contig14.3233.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig14.3233.1
Unique NamemRNA_S-ischiensis_contig14.3233.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig14contigS-ischiensis_contig14:870023..870376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size354
Cds size324
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.1332967-UTR-S-ischiensis_contig14:870022..8700521622815706.1332967-UTR-S-ischiensis_contig14:870022..870052Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 870023..870052 +
1695739864.1871314-UTR-S-ischiensis_contig14:870022..8700521695739864.1871314-UTR-S-ischiensis_contig14:870022..870052Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 870023..870052 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815706.1439512-CDS-S-ischiensis_contig14:870052..8703761622815706.1439512-CDS-S-ischiensis_contig14:870052..870376Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 870053..870376 +
1695739864.1983342-CDS-S-ischiensis_contig14:870052..8703761695739864.1983342-CDS-S-ischiensis_contig14:870052..870376Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 870053..870376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig14.3233.1prot_S-ischiensis_contig14.3233.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig14 870053..870376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig14.3233.1

>prot_S-ischiensis_contig14.3233.1 ID=prot_S-ischiensis_contig14.3233.1|Name=mRNA_S-ischiensis_contig14.3233.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=108bp
MQWPLLLLLLRRPRRRRRRRLLLRRGRAGVVPGTMLLLQQLEGQGGGRRP
GHYCRAPAAGPAARAQHQGALRFRARRVGAGARCALEVGAIAHVSPPSSS
WSCWSSSS
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mRNA from alignment at S-ischiensis_contig14:870023..870376+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig14.3233.1 ID=mRNA_S-ischiensis_contig14.3233.1|Name=mRNA_S-ischiensis_contig14.3233.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=354bp|location=Sequence derived from alignment at S-ischiensis_contig14:870023..870376+ (Schizocladia ischiensis KU_0333)
GCCGTCTGTGGGGGCAGCGGCAGCTCCGGGATGCAGTGGCCCCTGCTGCT
GCTGCTGCTGCGGCGGCCGCGGCGGCGGCGGCGGCGGCGGCTGCTCCTGC
GCCGGGGCCGGGCCGGGGTGGTCCCGGGTACCATGTTGCTGCTGCAGCAG
CTGGAAGGGCAAGGGGGAGGAAGGAGACCCGGACATTATTGCCGGGCCCC
CGCCGCCGGGCCCGCCGCCCGGGCCCAGCACCAGGGAGCTCTGAGGTTCC
GAGCCAGGCGGGTGGGTGCCGGTGCCAGGTGTGCCCTGGAGGTCGGGGCG
ATCGCGCATGTCTCCCCCCCCTCTTCCTCCTGGTCCTGCTGGTCCTCCTC
CTCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig14:870023..870376+

>mRNA_S-ischiensis_contig14.3233.1 ID=mRNA_S-ischiensis_contig14.3233.1|Name=mRNA_S-ischiensis_contig14.3233.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=648bp|location=Sequence derived from alignment at S-ischiensis_contig14:870023..870376+ (Schizocladia ischiensis KU_0333)
ATGCAGTGGCCCCTGCTGCTGCTGCTGCTGCGGCGGCCGCGGCGGCGGCG
GCGGCGGCGGCTGCTCCTGCGCCGGGGCCGGGCCGGGGTGGTCCCGGGTA
CCATGTTGCTGCTGCAGCAGCTGGAAGGGCAAGGGGGAGGAAGGAGACCC
GGACATTATTGCCGGGCCCCCGCCGCCGGGCCCGCCGCCCGGGCCCAGCA
CCAGGGAGCTCTGAGGTTCCGAGCCAGGCGGGTGGGTGCCGGTGCCAGGT
GTGCCCTGGAGGTCGGGGCGATCGCGCATGTCTCCCCCCCCTCTTCCTCC
TGGTCCTGCTGGTCCTCCTCCTCCATGCAGTGGCCCCTGCTGCTGCTGCT
GCTGCGGCGGCCGCGGCGGCGGCGGCGGCGGCGGCTGCTCCTGCGCCGGG
GCCGGGCCGGGGTGGTCCCGGGTACCATGTTGCTGCTGCAGCAGCTGGAA
GGGCAAGGGGGAGGAAGGAGACCCGGACATTATTGCCGGGCCCCCGCCGC
CGGGCCCGCCGCCCGGGCCCAGCACCAGGGAGCTCTGAGGTTCCGAGCCA
GGCGGGTGGGTGCCGGTGCCAGGTGTGCCCTGGAGGTCGGGGCGATCGCG
CATGTCTCCCCCCCCTCTTCCTCCTGGTCCTGCTGGTCCTCCTCCTCC
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