mRNA_S-ischiensis_contig14.3230.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig14.3230.1
Unique NamemRNA_S-ischiensis_contig14.3230.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig14.3230.1 vs. uniprot
Match: D7G0H3_ECTSI (Carbon catabolite repressor protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H3_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 1.870e-26
Identity = 60/115 (52.17%), Postives = 79/115 (68.70%), Query Frame = 3 
Query:  159 RRLAGSSSSLEGPGVG----LRITTYNVLAPIFKRVVPLGDDTLRESHNRDAYIGRHNGIIEHLQGLGSHLICLQEMWVEEAELMELYQKGLAKYSMHTLARTERRGDGVACFVR 491
            RR  GS       G G    L ITT+NVLAPIFKRV   G+   RES  R+ Y+ RH  I++H++G+GS ++CLQE+WV E E++++Y++GL  Y M TL RTE RGDGVACFV+
Sbjct:   54 RRDKGSDDKRVDCGDGGDETLSITTFNVLAPIFKRV---GNG--RESEFRETYLERHKAILKHIKGVGSDVVCLQELWVAEQEMVDMYRRGLRGYRMFTLPRTESRGDGVACFVK 163
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BLAST of mRNA_S-ischiensis_contig14.3230.1 vs. uniprot
Match: A0A6H5L7F0_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F0_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 7.880e-26
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 3 
Query:  189 EGPGVGLRITTYNVLAPIFKRVVPLGDDTLRESHNRDAYIGRHNGIIEHLQGLGSHLICLQEMWVEEAELMELYQKGLAKYSMHTLARTERRGDGVACFVR 491
            +G    L ITT+NVLAPIFKRV   G+   RES  R+ Y+ RH  I++H++G+GS ++CLQE+WV E E++++Y++GL  Y M TL RTE RGDG+ACFV+
Sbjct:  110 DGGDETLSITTFNVLAPIFKRV---GNG--RESEFRETYLERHKAILKHIKGVGSDVVCLQELWVAEQEMVDMYRRGLRGYRMFTLPRTESRGDGLACFVK 205
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BLAST of mRNA_S-ischiensis_contig14.3230.1 vs. uniprot
Match: A0A388LNF1_CHABU (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LNF1_CHABU)

HSP 1 Score: 85.5 bits (210), Expect = 2.020e-16
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = 3 
Query:  174 SSSSLEGPGVGLRITTYNVLAPIFKRVVPLGDDTLRESHNRDAYIGRHNGIIEHLQGLGSHLICLQEMWVEEAELMELY--QKGLAKYSMHTLARTERRGDGVACFVR 491
            S+SS E   V L  TT+NVLAPI+KR+   G   +RES +R++++ R+  II+ L    S +ICLQE W+   EL++LY  Q G A Y +H L RT  RGDG+   +R
Sbjct:  175 STSSAED--VYLSCTTFNVLAPIYKRINAEG---MRESQDRESWLARNQKIIDMLLKKNSSIICLQEFWLSNEELVQLYESQLGAAGYELHKLERTNNRGDGLLTAIR 277
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BLAST of mRNA_S-ischiensis_contig14.3230.1 vs. uniprot
Match: UPI00053AE7FF (uncharacterized calcium-binding protein At1g02270-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053AE7FF)

HSP 1 Score: 79.0 bits (193), Expect = 9.790e-16
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 3 
Query:  216 TTYNVLAPIFKRVVPLGDDTLRESHNRDAYIGRHNGIIEHLQGLGSHLICLQEMWVEEAELMELYQKGL--AKYSMHTLARTERRGD 470
            TT+N+LAPI+KR+ P  D +LRES NR  ++GR++ II+ L    S +ICLQE WV   EL+ +Y+K L  A Y  + L RT  RGD
Sbjct:   12 TTFNILAPIYKRLSPK-DQSLRESDNRTYWLGRNHRIIDWLLYERSSIICLQEFWVGNEELVNMYEKRLGDAGYLSYKLGRTNNRGD 97
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BLAST of mRNA_S-ischiensis_contig14.3230.1 vs. uniprot
Match: W1PK89_AMBTC (EF-hand domain-containing protein n=4 Tax=Amborella trichopoda TaxID=13333 RepID=W1PK89_AMBTC)

HSP 1 Score: 83.2 bits (204), Expect = 1.260e-15
Identity = 50/112 (44.64%), Postives = 72/112 (64.29%), Query Frame = 3 
Query:  159 RRLAGSSSSLEGPGVGLRITTYNVLAPIFKRVVPLGDDTLRESHNRDAYIGRHNGIIEHLQGLGSHLICLQEMWVEEAELMELYQKGL--AKYSMHTLARTERRGDGVACFV 488
            RR++ +SS    P V    TT+N+LAPI+KR+ PL + + RES  R+ ++ R+  I++ L    S +ICLQE WV  AEL+E+Y+K L  A Y+ + LART  RGDG+   V
Sbjct:   24 RRVSSNSSD---PCVSC--TTFNILAPIYKRLDPL-NQSCRESEFREYWLSRNQSILDRLLVEKSSIICLQEFWVGNAELVEMYEKRLDEAGYANYKLARTNNRGDGLLTAV 129
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BLAST of mRNA_S-ischiensis_contig14.3230.1 vs. uniprot
Match: A0A446JRF5_TRITD (Uncharacterized protein n=3 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446JRF5_TRITD)

HSP 1 Score: 78.2 bits (191), Expect = 1.410e-15
Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = 3 
Query:  216 TTYNVLAPIFKRVVPLGDDTLRESHNRDAYIGRHNGIIEHLQGLGSHLICLQEMWVEEAELMELYQKGL--AKYSMHTLARTERRGDGV 476
            TT+N+LAPI+KR   +  +  RES NR  +  R+  II+ L G  S +ICLQE+W+   EL+ +Y+K L  A Y++  LART  RGDG+
Sbjct:   38 TTFNILAPIYKR---MDSENGRESQNRANWFSRNEKIIDRLLGDRSSIICLQEVWLGNDELVNMYEKRLGDANYTLFKLARTNNRGDGI 123
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BLAST of mRNA_S-ischiensis_contig14.3230.1 vs. uniprot
Match: UPI00053971F2 (uncharacterized calcium-binding protein At1g02270-like n=2 Tax=Camelina sativa TaxID=90675 RepID=UPI00053971F2)

HSP 1 Score: 79.0 bits (193), Expect = 2.250e-15
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 3 
Query:  216 TTYNVLAPIFKRVVPLGDDTLRESHNRDAYIGRHNGIIEHLQGLGSHLICLQEMWVEEAELMELYQKGL--AKYSMHTLARTERRGD 470
            TT+N+LAPI+KR+ P  D +LRES NR  ++GR++ II+ L    S +ICLQE WV   EL+ +Y+K L  A Y  + L RT  RGD
Sbjct:   12 TTFNILAPIYKRLSPK-DQSLRESDNRTYWLGRNHRIIDWLLYERSSIICLQEFWVGNEELVNMYEKRLGDAGYLSYKLGRTNNRGD 97
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BLAST of mRNA_S-ischiensis_contig14.3230.1 vs. uniprot
Match: Q9LVV8_ARATH (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9LVV8_ARATH)

HSP 1 Score: 79.0 bits (193), Expect = 3.150e-15
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 3 
Query:  216 TTYNVLAPIFKRVVPLGDDTLRESHNRDAYIGRHNGIIEHLQGLGSHLICLQEMWVEEAELMELYQKGL--AKYSMHTLARTERRGDGVACFV 488
            TT+N+LAPI+KR+    D +LRES NR  ++GR++ II+ L    S +ICLQE WV   EL+ LY+K L  A Y  + L RT  RGDG+   V
Sbjct:   29 TTFNILAPIYKRLSHK-DQSLRESDNRAYWLGRNHRIIDWLLYERSSIICLQEFWVGNEELVNLYEKRLGDAGYLSYKLGRTNNRGDGLLTAV 120
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BLAST of mRNA_S-ischiensis_contig14.3230.1 vs. uniprot
Match: A0A0D3EAW3_BRAOL (EF-hand domain-containing protein n=31 Tax=Brassicaceae TaxID=3700 RepID=A0A0D3EAW3_BRAOL)

HSP 1 Score: 81.3 bits (199), Expect = 5.730e-15
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 3 
Query:  216 TTYNVLAPIFKRVVPLGDDTLRESHNRDAYIGRHNGIIEHLQGLGSHLICLQEMWVEEAELMELYQKGL--AKYSMHTLARTERRGDGVACFV 488
            TT+N+LAPI+KR+ P  D ++RES NR  ++GR++ II+ L    S +ICLQE WV   EL+ LY+K L  A Y  + L RT  RGDG+   V
Sbjct:   29 TTFNILAPIYKRLSPK-DQSIRESDNRAYWMGRNHRIIDWLLYERSSIICLQEFWVGNEELVSLYEKRLGDAGYLCYKLGRTNNRGDGLLTAV 120
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BLAST of mRNA_S-ischiensis_contig14.3230.1 vs. uniprot
Match: A0A804K5R6_MUSAM (EF-hand domain-containing protein n=3 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804K5R6_MUSAM)

HSP 1 Score: 80.9 bits (198), Expect = 8.270e-15
Identity = 47/112 (41.96%), Postives = 67/112 (59.82%), Query Frame = 3 
Query:  159 RRLAGSSSSLEGPGVGLRITTYNVLAPIFKRVVPLGDDTLRESHNRDAYIGRHNGIIEHLQGLGSHLICLQEMWVEEAELMELYQKGL--AKYSMHTLARTERRGDGVACFV 488
            +R+     S+ G    +  TT+N+LAPI+KRV   GD + RES  R  ++ R+  II+ L G  S +ICLQE+W+   EL+++Y+K L  A Y    LART  RGDG+   V
Sbjct:   24 KRMRMGCGSMVGSERCVSCTTFNILAPIYKRVSE-GDQSCRESQCRAYWLSRNERIIDRLLGDRSSIICLQEVWLGNDELVDMYEKRLGDAGYVSFKLARTNNRGDGLLTAV 134
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0H3_ECTSI1.870e-2652.17Carbon catabolite repressor protein, putative n=1 ... [more]
A0A6H5L7F0_9PHAE7.880e-2653.47Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A388LNF1_CHABU2.020e-1645.37Endo/exonuclease/phosphatase domain-containing pro... [more]
UPI00053AE7FF9.790e-1649.43uncharacterized calcium-binding protein At1g02270-... [more]
W1PK89_AMBTC1.260e-1544.64EF-hand domain-containing protein n=4 Tax=Amborell... [more]
A0A446JRF5_TRITD1.410e-1546.07Uncharacterized protein n=3 Tax=Triticum turgidum ... [more]
UPI00053971F22.250e-1549.43uncharacterized calcium-binding protein At1g02270-... [more]
Q9LVV8_ARATH3.150e-1548.39Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A0D3EAW3_BRAOL5.730e-1548.39EF-hand domain-containing protein n=31 Tax=Brassic... [more]
A0A804K5R6_MUSAM8.270e-1541.96EF-hand domain-containing protein n=3 Tax=Musa acu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig14contigS-ischiensis_contig14:853240..854888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue4.9e-23
Seed eggNOG ortholog2880.D7G0H3
KEGG koko:K19612,ko:K21777
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0050896
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGsCOG5239@1,KOG2338@2759
EC3.1.13.4
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019,ko03029,ko03032,ko03036
Hectar predicted targeting categorymitochondrion
Exons2
Model size491
Cds size471
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig14.3230.1prot_S-ischiensis_contig14.3230.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig14 853240..854868 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815713.233837-CDS-S-ischiensis_contig14:853239..8533891622815713.233837-CDS-S-ischiensis_contig14:853239..853389Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 853240..853389 -
1695739868.8548155-CDS-S-ischiensis_contig14:853239..8533891695739868.8548155-CDS-S-ischiensis_contig14:853239..853389Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 853240..853389 -
1622815713.2470608-CDS-S-ischiensis_contig14:854547..8548681622815713.2470608-CDS-S-ischiensis_contig14:854547..854868Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 854548..854868 -
1695739868.8682375-CDS-S-ischiensis_contig14:854547..8548681695739868.8682375-CDS-S-ischiensis_contig14:854547..854868Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 854548..854868 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815713.263254-UTR-S-ischiensis_contig14:854868..8548881622815713.263254-UTR-S-ischiensis_contig14:854868..854888Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 854869..854888 -
1695739868.8790731-UTR-S-ischiensis_contig14:854868..8548881695739868.8790731-UTR-S-ischiensis_contig14:854868..854888Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 854869..854888 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig14.3230.1

>prot_S-ischiensis_contig14.3230.1 ID=prot_S-ischiensis_contig14.3230.1|Name=mRNA_S-ischiensis_contig14.3230.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=157bp
MACKPRRGAGTYGRLRLWPLYLAAASAFVAPPWDPRTARLPPSTTTRRLA
GSSSSLEGPGVGLRITTYNVLAPIFKRVVPLGDDTLRESHNRDAYIGRHN
GIIEHLQGLGSHLICLQEMWVEEAELMELYQKGLAKYSMHTLARTERRGD
GVACFVR
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mRNA from alignment at S-ischiensis_contig14:853240..854888-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig14.3230.1 ID=mRNA_S-ischiensis_contig14.3230.1|Name=mRNA_S-ischiensis_contig14.3230.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1649bp|location=Sequence derived from alignment at S-ischiensis_contig14:853240..854888- (Schizocladia ischiensis KU_0333)
ACCATCTGCAGCTCCTCCGAATGGCCTGCAAGCCAAGACGAGGCGCAGGA
ACCTATGGAAGACTGCGCCTGTGGCCGTTGTACTTGGCCGCAGCCTCCGC
GTTCGTGGCACCGCCGTGGGATCCACGGACAGCGCGCCTTCCGCCGAGCA
CAACAACGCGGAGATTGGCCGGCTCGAGCTCGAGCCTCGAGGGCCCGGGC
GTAGGGCTCAGGATAACCACTTACAATGTCTTGGCCCCCATCTTCAAGCG
TGTGGTTCCCCTTGGGGATGACACGCTCCGGGAGAGCCACAACAGGGACG
CCTATATTGGCCGCCACAACGGCATCATCGAGCATTTGCAGGTAAGTAGG
TACTGCGCACAGACGGGTCCGCTCTTGGGGTCCCTATTTCATTGCAAGTT
TCGCGTCTGGACCCCCAGGAGCCTTGCAGCTCCTGTGTCGAAGCCCCTCG
CATTGAACGGGGTGCTACAGAGCTTCGGTTGCGGCTGCCGCGGCTAGCCG
CGGTGGTCGCCGGCAATGGCGCACGGGCAACGGCTCGTGGCAGCTCAGGC
TTTAACCCTTTTTCCCCTGCTAAATTGGACTTAGGCACTGAAACCCTATT
ATTATACGGACCTCAGGGGTAAAACGGTGAACAAATCGCTTGCTGCAGGG
CCGTGGTAGAGCTGGAGCAGTGATCCGAACGTGCGTGCTTTCATGGGACC
GTGGTGTGGACAGAAATGCTGTAGCTGGCCTGTCATCCCGAGTTTCGAGG
TACTCCCAATGTACTACTACTGTAGTAGTCGACCTCAGCTCGCCGCTTGC
GAGCCTTCAAACGTGCTTTCATAGTGCTGTGCAGTACTTCGGTGCATTGG
AAATACCTCTCCGCCGCCGTGCATTGGAGTATGTATACTAAGTATGTACT
TGGAAGTACTGCAGTATGCTTTGAAGTACGTATACTCCGAACTTTGGAGT
ATGTATGCTGAGTACGTCAAAGTATGTAGTACATGTATACTTCGAAGTAC
TGTACTCACATACTGTAGTACACTCTATGTGCTCCAAAAGTATTCGAGTC
TGAGAGTGTGTATTGACAGTCTCGGAAATTGACACAGTGGTTAATAGTCT
CGGGACTACGGCGAGCAACAAGCGTGTACGAGTACTTTGGAAGTGGAGGA
GGAGGGGGGACAAGGAGGAGGAAGAGAATCCTTGCAATATCAATGGCTAC
TGCAAGAGCGCTCGATTGCCACTCACGCAGGCTCTATCGATCGTATCATG
TATACCTCGTGTTCCGTCTCGATCGAGGCACGTGGTCAATGGTCTCGGGA
CTACGGCAAGCGCAACGTGAGTACATGTATACCACGTTGCGATTTATTCC
ACAACCGCCGCCACTCCTCCCCCTCCTCCTTTTCTCCCCTTCCCCACACA
AAAACTTTCCCTGGCGAGCTAATGTAGGGCCACTGTTGAGGTCTTTGCTG
ATGTGGCCTGCACCTCGCCCTGTGTTGTTCCTGTTAACACTGCCACCAGG
GCCTGGGGAGCCACCTGATCTGCCTGCAGGAGATGTGGGTAGAGGAGGCA
GAGCTCATGGAGCTGTACCAAAAAGGGCTGGCCAAGTACAGCATGCACAC
CCTGGCCCGCACCGAGAGGAGGGGGGATGGCGTGGCGTGCTTTGTGAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig14:853240..854888-

>mRNA_S-ischiensis_contig14.3230.1 ID=mRNA_S-ischiensis_contig14.3230.1|Name=mRNA_S-ischiensis_contig14.3230.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=942bp|location=Sequence derived from alignment at S-ischiensis_contig14:853240..854888- (Schizocladia ischiensis KU_0333)
ATGGCCTGCAAGCCAAGACGAGGCGCAGGAACCTATGGAAGACTGCGCCT
GTGGCCGTTGTACTTGGCCGCAGCCTCCGCGTTCGTGGCACCGCCGTGGG
ATCCACGGACAGCGCGCCTTCCGCCGAGCACAACAACGCGGAGATTGGCC
GGCTCGAGCTCGAGCCTCGAGGGCCCGGGCGTAGGGCTCAGGATAACCAC
TTACAATGTCTTGGCCCCCATCTTCAAGCGTGTGGTTCCCCTTGGGGATG
ACACGCTCCGGGAGAGCCACAACAGGGACGCCTATATTGGCCGCCACAAC
GGCATCATCGAGCATTTGCAGATGGCCTGCAAGCCAAGACGAGGCGCAGG
AACCTATGGAAGACTGCGCCTGTGGCCGTTGTACTTGGCCGCAGCCTCCG
CGTTCGTGGCACCGCCGTGGGATCCACGGACAGCGCGCCTTCCGCCGAGC
ACAACAACGCGGAGATTGGCCGGCTCGAGCTCGAGCCTCGAGGGCCCGGG
CGTAGGGCTCAGGATAACCACTTACAATGTCTTGGCCCCCATCTTCAAGC
GTGTGGTTCCCCTTGGGGATGACACGCTCCGGGAGAGCCACAACAGGGAC
GCCTATATTGGCCGCCACAACGGCATCATCGAGCATTTGCAGGGCCTGGG
GAGCCACCTGATCTGCCTGCAGGAGATGTGGGTAGAGGAGGCAGAGCTCA
TGGAGCTGTACCAAAAAGGGCTGGCCAAGTACAGCATGCACACCCTGGCC
CGCACCGAGAGGAGGGGGGATGGCGTGGCGTGCTTTGTGAGGGGCCTGGG
GAGCCACCTGATCTGCCTGCAGGAGATGTGGGTAGAGGAGGCAGAGCTCA
TGGAGCTGTACCAAAAAGGGCTGGCCAAGTACAGCATGCACACCCTGGCC
CGCACCGAGAGGAGGGGGGATGGCGTGGCGTGCTTTGTGAGG
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