mRNA_S-ischiensis_contig14.3179.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig14.3179.1 vs. uniprot
Match: D7G3H0_ECTSI (Globin, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H0_ECTSI) HSP 1 Score: 87.0 bits (214), Expect = 8.630e-16 Identity = 44/98 (44.90%), Postives = 65/98 (66.33%), Query Frame = 1
Query: 112 RVGRKQHVDQLLGHGANFQGKLEFQGVLRVDGRFEGELKPLGRATVIVSEGAAIIGDVEGMESVQIAGTVVGNIQTKLAVLRKGAVVRGDVDCARLSS 405
R+ R D ++G GA QG+L+F+G+LRV+GRFEG LK A ++V+ I GDVEG SV + GT++GN+ + VLR+ A V+G+V C L++
Sbjct: 28 RLVRSNKPDHVIGPGAMLQGRLQFKGLLRVEGRFEGVLKAAEGANMMVARSGVIAGDVEGCHSVIVEGTIIGNVSASVVVLRRYANVQGNVWCKDLAA 125
BLAST of mRNA_S-ischiensis_contig14.3179.1 vs. uniprot
Match: A0A3A8JFB4_9DELT (Polymer-forming cytoskeletal protein n=5 Tax=Corallococcus TaxID=83461 RepID=A0A3A8JFB4_9DELT) HSP 1 Score: 78.2 bits (191), Expect = 1.940e-14 Identity = 45/122 (36.89%), Postives = 75/122 (61.48%), Query Frame = 1
Query: 121 RKQHVDQLLGHGANFQGKLEFQGVLRVDGRFEGELKPLGRATVIVSEGAAIIGDVEGMESVQIAGTVVGNIQ-TKLAVLRKGAVVRGDVDCARLSSHPGADITGAIRIR-QGSFRNLPPPMG 480
R V LLG G+ F+GKL F+G +R+DG+F+G++ + + +++ +GA + GD++ +V I GTV GN++ T+L L+ +RGD++ L+ GA G ++R QG PPP+G
Sbjct: 27 RPGEVHTLLGKGSEFEGKLSFEGQVRIDGKFKGQI--ITKDVLVIGDGAQVNGDIQA-GTVIINGTVEGNVRATQLIELKATGQIRGDIESPALTMERGASFDGNSKMRSQGKGGGNPPPLG 145
BLAST of mRNA_S-ischiensis_contig14.3179.1 vs. uniprot
Match: A0A6H5KC50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC50_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 1.340e-13 Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 1
Query: 166 QGKLEFQGVLRVDGRFEGELKPLGRATVIVSEGAAIIGDVEGMESVQIAGTVVGNIQTKLAVLRKGAVVRG 378
+G+L+F+G+LRV+GRFEG LKP+ A ++V+ I GDVEG SV + GTV+GN+ + VLR+ A V+G
Sbjct: 10 KGRLQFKGLLRVEGRFEGVLKPVEGANMMVARSGVIAGDVEGCHSVIVEGTVIGNVSASVVVLRRYANVQG 80
BLAST of mRNA_S-ischiensis_contig14.3179.1 vs. uniprot
Match: A0A7C5IAW1_9DELT (Polymer-forming cytoskeletal family protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C5IAW1_9DELT) HSP 1 Score: 68.9 bits (167), Expect = 3.850e-11 Identity = 44/119 (36.97%), Postives = 71/119 (59.66%), Query Frame = 1
Query: 127 QHVDQLLGHGANFQGKLEFQGVLRVDGRFEGELKPLGRATVIVSEGAAIIGDVEGMESVQIAGTVVGNIQTKLAV-LRKGAVVRGDVDCARLSSHPGADITG--AIRIRQGSFRNLPPP 474
+ V+ LLG G+ F+GKL F+G +R+DG+F G+++ G T+I+ EGA + +V +++V I G +VGN++ K AV L +RG++ A L GA G + R+G+ P P
Sbjct: 10 REVNALLGRGSEFEGKLTFEGTVRIDGKFSGDVQSDG--TLIIGEGAKVKAEVV-VDTVIIQGDMVGNVRAKTAVELHAPGRLRGNIQTAALVVQRGAIFDGNCVMEGREGATERRPGP 125
BLAST of mRNA_S-ischiensis_contig14.3179.1 vs. uniprot
Match: A0A7C2VRS5_9DELT (Polymer-forming cytoskeletal protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C2VRS5_9DELT) HSP 1 Score: 68.6 bits (166), Expect = 4.330e-11 Identity = 47/125 (37.60%), Postives = 69/125 (55.20%), Query Frame = 1
Query: 112 RVGRKQHVDQLLGHGANFQGKLEFQGVLRVDGRFEGELKPLGRATVIVSEGAAIIGDVE-GMESVQIAGTVVGNIQTKLAV-LRKGAVVRGDVDCARLSSHPGADITGAIRIRQGSFRNLPPPMG 480
+ G ++ V+ LG F+GKL+F+G +R+DGRF+GE++ +IV EGA + G+VE G VQ G V GN++ V LR A V GD+ L+ GA G R+R+ + P G
Sbjct: 3 KEGLREDVNAFLGRETAFEGKLDFKGAVRIDGRFKGEIRSAD--LLIVGEGARVEGEVEVGTAIVQ--GEVFGNVRASKKVDLRSSAKVIGDIVTPTLAVEEGALFHGHCRMREEELPSQEPAEG 123
BLAST of mRNA_S-ischiensis_contig14.3179.1 vs. uniprot
Match: A0A7Y5LQQ2_9DELT (Polymer-forming cytoskeletal protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y5LQQ2_9DELT) HSP 1 Score: 68.2 bits (165), Expect = 9.980e-11 Identity = 41/115 (35.65%), Postives = 69/115 (60.00%), Query Frame = 1
Query: 133 VDQLLGHGANFQGKLEFQGVLRVDGRFEGELKPLGRATVIVSEGAAIIGDVEGMESVQIAGTVVGNIQTKLAV-LRKGAVVRGDVDCARLSSHPGADITGAIRIRQGSFRNLPPP 474
V+ LLG G+ F+GKL F+G +R+DGRF+GE+ T+IV E A + ++ +++V I G V+GNI ++ V L A +RG++ L + G G +++++ + PPP
Sbjct: 7 VNALLGKGSEFEGKLTFEGTVRIDGRFKGEI--FSEDTLIVGESAQVTAEIR-VDTVIIYGDVIGNIYSRSCVELHAPARLRGNIVTPNLQADKGVIFDGNVKMQE----DTPPP 114
BLAST of mRNA_S-ischiensis_contig14.3179.1 vs. uniprot
Match: UPI001A1A5ABB (Bactofilin BacM n=2 Tax=Myxococcaceae TaxID=31 RepID=UPI001A1A5ABB) HSP 1 Score: 68.2 bits (165), Expect = 1.070e-10 Identity = 39/121 (32.23%), Postives = 76/121 (62.81%), Query Frame = 1
Query: 121 RKQHVDQLLGHGANFQGKLEFQGVLRVDGRFEGELKPLGRATVIVSEGAAIIGDVEGMESVQIAGTVVGNIQ-TKLAVLRKGAVVRGDVDCARLSSHPGADITGAIRIRQGSFRNLPPPMG 480
R V LLG G+ F+GKL F+G +R+DG+F+G++ + + +++ +GA + +++ +V I GTV GN++ T L L++ ++G+++ LS G G++++ S +++PPP+G
Sbjct: 27 RPGEVHTLLGKGSEFEGKLTFEGQVRIDGKFQGQI--VTKDVLVIGDGARVNAEIQA-GTVIINGTVEGNVKATTLIELKQPGRIKGNLETPALSMDRGVIFEGSLKMENIS-KSVPPPVG 143
BLAST of mRNA_S-ischiensis_contig14.3179.1 vs. uniprot
Match: A0A7V9L2Q9_9DELT (Polymer-forming cytoskeletal protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V9L2Q9_9DELT) HSP 1 Score: 67.8 bits (164), Expect = 1.160e-10 Identity = 47/134 (35.07%), Postives = 72/134 (53.73%), Query Frame = 1
Query: 103 ARMRVGRKQHVDQLLGHGANFQGKLEFQGVLRVDGRFEGELKPLGRATVIVSEGAAIIGDVEGMESVQIAGTVVGNIQTKLAV-LRKGAVVRGDVDCARLSSHPGADITGAIRIRQGSFRNL----PPPMGAVP 489
AR +G + LLG GA F+GKL F+G +R+DGRF+GE+ T+++ EGA + +++ + V I GTVVGNI+ K ++ + V+GD+ L G G + S + + PPP VP
Sbjct: 6 ARQAMGE---ITTLLGRGATFEGKLTFEGTVRIDGRFKGEV--FSDDTLVIGEGAIVEAEID-IGEVIIQGTVVGNIKAKRSIEIHAPGRVKGDLHTPTLQVDKGVIFEGRSFMEGASKQPVGGGNPPPKANVP 133
BLAST of mRNA_S-ischiensis_contig14.3179.1 vs. uniprot
Match: A0A3A6NPB9_9FIRM (Polymer-forming cytoskeletal protein n=1 Tax=Dethiobacter sp. TaxID=2093370 RepID=A0A3A6NPB9_9FIRM) HSP 1 Score: 66.6 bits (161), Expect = 1.940e-10 Identity = 39/113 (34.51%), Postives = 67/113 (59.29%), Query Frame = 1
Query: 106 RMRVGRKQHVDQLLGHGANFQGKLEFQGVLRVDGRFEGELKPLGRATVIVSEGAAIIGDVEGMESVQIAGTVVGNIQTKLAV-LRKGAVVRGDVDCARLSSHPGADITGAIRI 441
+ + + VD L+G + GKLE +G+LR+DGR+EG++ + +I+ E A I DV+G+ ++ +AG V GNI+ + + +R G + GDV A LS G+ G+ ++
Sbjct: 3 KKKTPEAKKVDTLIGKETSITGKLEARGILRIDGRYEGDI--YAESDIIIGETALIKADVKGI-NITLAGRVEGNIKAENKLEIRSGGALIGDVTAAVLSIEEGSLFAGSCKM 112
BLAST of mRNA_S-ischiensis_contig14.3179.1 vs. uniprot
Match: A0A7W0VB45_9DELT (Polymer-forming cytoskeletal protein n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W0VB45_9DELT) HSP 1 Score: 66.2 bits (160), Expect = 4.020e-10 Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = 1
Query: 133 VDQLLGHGANFQGKLEFQGVLRVDGRFEGELKPLGRATVIVSEGAAIIGDVEGMESVQIAGTVVGNIQTK-LAVLRKGAVVRGDVDCARLSSHPGADITGAIRIRQGSFRNLPPPMGAVPSSGAPA 507
+ LLG GA F+GKL F G +R+DGRF+GE+ T+++ EGA + +++ E + I GTVVGNI+ K L + V+GD+ L G G + + PPP P APA
Sbjct: 13 ITTLLGRGAAFEGKLTFDGTVRIDGRFKGEV--FSDDTLVIGEGAVVEAEIDVGEII-IQGTVVGNIKAKRLIEIHAPGRVKGDLHTPTLQIDKGVIFEGRSFMEAANGGLKPPP----PKPPAPA 131 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig14.3179.1 >prot_S-ischiensis_contig14.3179.1 ID=prot_S-ischiensis_contig14.3179.1|Name=mRNA_S-ischiensis_contig14.3179.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=253bp PGSRAFFAPTRSTPLVVRLEEEGIDSPTAQHLLGARMRVGRKQHVDQLLGback to top mRNA from alignment at S-ischiensis_contig14:259505..261147- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig14.3179.1 ID=mRNA_S-ischiensis_contig14.3179.1|Name=mRNA_S-ischiensis_contig14.3179.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1643bp|location=Sequence derived from alignment at S-ischiensis_contig14:259505..261147- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig14:259505..261147- >mRNA_S-ischiensis_contig14.3179.1 ID=mRNA_S-ischiensis_contig14.3179.1|Name=mRNA_S-ischiensis_contig14.3179.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1518bp|location=Sequence derived from alignment at S-ischiensis_contig14:259505..261147- (Schizocladia ischiensis KU_0333)back to top |