mRNA_S-ischiensis_contig14.3162.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig14.3162.1
Unique NamemRNA_S-ischiensis_contig14.3162.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig14.3162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig14contigS-ischiensis_contig14:18278..18889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size612
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig14.3162.1prot_S-ischiensis_contig14.3162.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig14 18305..18724 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.550818-UTR-S-ischiensis_contig14:18277..183041622815705.550818-UTR-S-ischiensis_contig14:18277..18304Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 18278..18304 +
1695739863.9640768-UTR-S-ischiensis_contig14:18277..183041695739863.9640768-UTR-S-ischiensis_contig14:18277..18304Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 18278..18304 +
1622815705.5807676-UTR-S-ischiensis_contig14:18724..188891622815705.5807676-UTR-S-ischiensis_contig14:18724..18889Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 18725..18889 +
1695739863.9801154-UTR-S-ischiensis_contig14:18724..188891695739863.9801154-UTR-S-ischiensis_contig14:18724..18889Schizocladia ischiensis KU_0333UTRS-ischiensis_contig14 18725..18889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.5668895-CDS-S-ischiensis_contig14:18304..187241622815705.5668895-CDS-S-ischiensis_contig14:18304..18724Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 18305..18724 +
1695739863.9721246-CDS-S-ischiensis_contig14:18304..187241695739863.9721246-CDS-S-ischiensis_contig14:18304..18724Schizocladia ischiensis KU_0333CDSS-ischiensis_contig14 18305..18724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig14.3162.1

>prot_S-ischiensis_contig14.3162.1 ID=prot_S-ischiensis_contig14.3162.1|Name=mRNA_S-ischiensis_contig14.3162.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=140bp
MTVIVRRCCHPHHRHHRRRRRRRRDRRRCRRHHARDQSRGSKGRCHRHYR
GRTLVPGWAPATAHPWGCRSPPSCPRSCWRCSTVTQMCPPCPRPGPPPRA
PRAAPGEPHSVPATRGPYYYYSHSHCLLGQRSRQQNYQR*
back to top

mRNA from alignment at S-ischiensis_contig14:18278..18889+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig14.3162.1 ID=mRNA_S-ischiensis_contig14.3162.1|Name=mRNA_S-ischiensis_contig14.3162.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=612bp|location=Sequence derived from alignment at S-ischiensis_contig14:18278..18889+ (Schizocladia ischiensis KU_0333)
GCAGATATACATACCTACCTATATGCTATGACCGTAATTGTTCGCCGCTG
CTGCCATCCTCACCATCGCCACCACCGCCGCCGCCGCCGCCGCCGCCGTG
ACCGCCGCCGCTGCCGCCGCCACCACGCACGCGACCAGTCCCGAGGCAGC
AAGGGCAGATGTCACCGTCACTACCGTGGACGAACCCTTGTCCCCGGATG
GGCTCCAGCAACAGCTCACCCCTGGGGCTGTCGCTCCCCTCCGAGTTGTC
CTCGGAGTTGTTGGCGCTGTAGTACGGTGACCCAAATGTGTCCTCCGTGC
CCCCGGCCGGGCCCACCCCCCCGGGCCCCCCGGGCGGCCCCAGGCGAGCC
CCATTCTGTGCCTGCCACGCGTGGACCCTACTACTACTACTCGCATAGTC
ACTGCCTTCTTGGCCAGCGGTCACGCCAGCAGAACTACCAGCGGTAGTGC
CGGGTGGGCCACCGTGTCCGCGCCTGCCCGGCCCGCCTGAGCCTGCCCCA
CCCGACCTGCCAGCAGCTCGGGTAGCCCGAGAAGCAGCCGCAGGAGCAGC
AGCCCACGGGGAACCCTGGCTCGGCACCCCGGCCCGGGCTTCTGCCCCTG
CTTCAGCCCCCG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig14:18278..18889+

>mRNA_S-ischiensis_contig14.3162.1 ID=mRNA_S-ischiensis_contig14.3162.1|Name=mRNA_S-ischiensis_contig14.3162.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=840bp|location=Sequence derived from alignment at S-ischiensis_contig14:18278..18889+ (Schizocladia ischiensis KU_0333)
ATGACCGTAATTGTTCGCCGCTGCTGCCATCCTCACCATCGCCACCACCG
CCGCCGCCGCCGCCGCCGCCGTGACCGCCGCCGCTGCCGCCGCCACCACG
CACGCGACCAGTCCCGAGGCAGCAAGGGCAGATGTCACCGTCACTACCGT
GGACGAACCCTTGTCCCCGGATGGGCTCCAGCAACAGCTCACCCCTGGGG
CTGTCGCTCCCCTCCGAGTTGTCCTCGGAGTTGTTGGCGCTGTAGTACGG
TGACCCAAATGTGTCCTCCGTGCCCCCGGCCGGGCCCACCCCCCCGGGCC
CCCCGGGCGGCCCCAGGCGAGCCCCATTCTGTGCCTGCCACGCGTGGACC
CTACTACTACTACTCGCATAGTCACTGCCTTCTTGGCCAGCGGTCACGCC
AGCAGAACTACCAGCGGTAGATGACCGTAATTGTTCGCCGCTGCTGCCAT
CCTCACCATCGCCACCACCGCCGCCGCCGCCGCCGCCGCCGTGACCGCCG
CCGCTGCCGCCGCCACCACGCACGCGACCAGTCCCGAGGCAGCAAGGGCA
GATGTCACCGTCACTACCGTGGACGAACCCTTGTCCCCGGATGGGCTCCA
GCAACAGCTCACCCCTGGGGCTGTCGCTCCCCTCCGAGTTGTCCTCGGAG
TTGTTGGCGCTGTAGTACGGTGACCCAAATGTGTCCTCCGTGCCCCCGGC
CGGGCCCACCCCCCCGGGCCCCCCGGGCGGCCCCAGGCGAGCCCCATTCT
GTGCCTGCCACGCGTGGACCCTACTACTACTACTCGCATAGTCACTGCCT
TCTTGGCCAGCGGTCACGCCAGCAGAACTACCAGCGGTAG
back to top