mRNA_S-ischiensis_contig130.3159.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig130.3159.1
Unique NamemRNA_S-ischiensis_contig130.3159.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig130.3159.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 198 bits (503), Expect = 3.950e-58
Identity = 116/302 (38.41%), Postives = 173/302 (57.28%), Query Frame = 1
Query:    4 LPRGTNVLGSRWVFTNKEGPDGEILRRKARFVARFVAQGFTQVPGQDFLATFAPVARLETIRATLALVAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPRNWYGEFQTFILEELGFTASDADPCLF*-CKADGMLTLIVVYVDDCVVAGSGSATVEEVIMQLKECFDIKDLGLATYLLGMHIDQDPVSRTLTVSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKGGTGKAAGATGAGKEALPPEGEE-QHEYREPVGSLLFLAQCTRPN 903
            LP+G   + S WV T+K   +G I+RRKARF+A+    G++Q  G D+L T+APVA + TIR  LA+      ++   DV TA+L + ++E  +IYV+QPPG+E+CGP GE LV RL +SLYGLKQS RNW+ +   +     GF +S ADPCL+    + G + +IV+YVDD ++AG+    V++    + +   +KDL    ++LGM I ++   R + +SQ  Y   +LA+F M    P LT    +  + +  G                  EG++   EY + VGSLL+ A  TRP+
Sbjct:   11 LPKGERCISSGWVETDKRDQNGIIVRRKARFIAK----GYSQEYGYDYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEE--KIYVKQPPGYEQCGPNGEELVCRLRKSLYGLKQSGRNWHKKIDGWF-RGYGFHSSSADPCLYVKFGSSGEMLVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNREKRFMEISQTAYIDMMLAKFKMADCKPVLT--PMEGILTKMNG------------------EGDKPDREYMKLVGSLLYAALVTRPD 285          
BLAST of mRNA_S-ischiensis_contig130.3159.1 vs. uniprot
Match: UPI001C91A683 (hypothetical protein n=1 Tax=Modestobacter lapidis TaxID=1608613 RepID=UPI001C91A683)

HSP 1 Score: 193 bits (491), Expect = 8.200e-56
Identity = 110/300 (36.67%), Postives = 170/300 (56.67%), Query Frame = 1
Query:   22 VLGSRWVFTNKEGPDGEILRRKARFVARFVAQGFTQVPGQDFLATFAPVARLETIRATLALVAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPRNWYGEFQTFILEELGFTASDADPCLF*CKADGMLTLIVVYVDDCVVAGSGSATVEEVIMQLKECFDIKDLGLATYLLGMHIDQDPVSRTLTVSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKGGTGKAAGATGAGKEALPPEGEEQHE------YREPVGSLLFLAQCTRPN 903
             +G +WVF  K+  +G+I + KAR VA+    G+ Q+ G D+   F+PVA+L +IR  L+  A +  ++ Q DV TAFLH  ++E  +IY++QP GF   G   E LV +L +SLYGLKQSPR WY +F ++  +++GFT S AD C++  +   M  ++ +YVDD ++ G+ +  +  V   L + F++KDLG A ++LGMHI +D   R L + Q +Y   IL +F M    P                GT  + G   + +++  P+ EE+ E      Y   VGSL++   CTRP+
Sbjct:    4 AIGCKWVFKKKQDAEGKIGKYKARLVAK----GYAQIEGVDYAEIFSPVAKLTSIRTVLSAAAAYDLEIEQMDVKTAFLHGDLEE--EIYMKQPEGFVARGK--ENLVCKLEKSLYGLKQSPRMWYQKFDSYA-QQIGFTRSHADHCVYVKREGEMFVILTLYVDDMLLIGNSTKMIRTVKDLLAKQFEMKDLGAANFILGMHIRRDRARRRLWLGQERYIEGILKKFNMTDCKPV---------------GTPMSVGVKLSAEQS--PQNEEEKEQMASIPYASAVGSLMYAMVCTRPD 277          
BLAST of mRNA_S-ischiensis_contig130.3159.1 vs. uniprot
Match: A0A7D9M8W6_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M8W6_PARCT)

HSP 1 Score: 197 bits (501), Expect = 2.270e-55
Identity = 112/301 (37.21%), Postives = 178/301 (59.14%), Query Frame = 1
Query:    1 KLPRGTNVLGSRWVFTNKEGPDGEILRRKARFVARFVAQGFTQVPGQDFLATFAPVARLETIRATLALVAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPRNWYGEFQTFILEELGFTASDADPCLF*CKADGMLTLIVVYVDDCVVAGSGSATVEEVIMQLKECFDIKDLGLATYLLGMHIDQDPVSRTLTVSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKGGTGKAAGATGAGKEALPPEGEEQHEYREPVGSLLFLAQCTRPN 903
            KLP G +++G+RWV+T KEG +GE       + AR+VA+G++QVP  D+  TF+P A++ +IR  + L      +V Q DV TA+L+APVD   ++Y+ QP GF +    GE LV +L++SLYGLKQS RNW     TF+  + GFT   +DPC++  K +G  T+++++VDD ++A + + ++++V   L   F +KDLG+ ++ LG++        T+T+ Q +Y   IL RF M+   P +T  +          G  KA+    AG    P + +    Y+E VGSL+++   TRP+
Sbjct:   83 KLPEGKSIVGARWVYTVKEGKNGE-----KSYKARYVAKGYSQVPEVDYFETFSPTAKITSIRMLMQLALDLDMEVHQMDVKTAYLNAPVD--CELYIEQPEGFVKHSESGEMLVCKLNKSLYGLKQSGRNWNHMLHTFLTSK-GFTQLVSDPCVYIKKQNGKTTILLIWVDDIIIASNSTPSLKQVKDDLSCKFKMKDLGILSWFLGINFTF--TGNTITMDQIRYIERILIRFKMEGCKPRVTPSEL---------GVNKAS----AGNSDEPADLKL---YQEIVGSLIYVMTSTRPD 357          
BLAST of mRNA_S-ischiensis_contig130.3159.1 vs. uniprot
Match: H3GAU1_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GAU1_PHYRM)

HSP 1 Score: 191 bits (484), Expect = 1.110e-54
Identity = 108/301 (35.88%), Postives = 170/301 (56.48%), Query Frame = 1
Query:    1 KLPRGTNVLGSRWVFTNKEGPDGEILRRKARFVARFVAQGFTQVPGQDFLATFAPVARLETIRATLALVAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPRNWYGEFQTFILEELGFTASDADPCLF*CKADGMLTLIVVYVDDCVVAGSGSATVEEVIMQLKECFDIKDLGLATYLLGMHIDQDPVSRTLTVSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKGGTGKAAGATGAGKEALPPEGEEQHEYREPVGSLLFLAQCTRPN 903
            K+PR    +G +WVF  K  P+G +++    F AR VA+G+TQ PG DF  TFAPVAR E+I A+LA  A    +    DV TAFL+  V+E  ++Y+ QP GFE+      + +  L ++LYG KQ+ R W  +   + LE+ GF  SDADPC++  ++    +++V+YVD  ++       +E + + LK+ F IK+LG   Y LG+ ID++   +T+ ++QR Y   +  +FG+D+     T  D  + +V+               +EA   +    + YRE VG+L++LA CTRP+
Sbjct:   30 KMPRDKKAIGCKWVFRIKRDPNGNVVK----FKARLVAKGYTQRPGIDFTDTFAPVARKESINASLATAAEEDMEAENVDVDTAFLYGDVEE--ELYMDQPDGFEDQSNPAMKCL--LKQALYGTKQAARQWNNKLNKY-LEDQGFRRSDADPCVYVRRSTDEYSIVVIYVDALMLFSKTKEHIESIKVTLKKKFSIKELGELKYCLGIEIDRNREDKTILMNQRAYIKRLAEKFGVDKCKAVHTPADCNSKLVKM------------TEEEAFVAK----YPYRELVGALMYLATCTRPD 305          
BLAST of mRNA_S-ischiensis_contig130.3159.1 vs. uniprot
Match: A0A2Z7B647_9LAMI (Cysteine-rich RLK (Receptor-like protein kinase) 8 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7B647_9LAMI)

HSP 1 Score: 190 bits (483), Expect = 1.410e-54
Identity = 122/304 (40.13%), Postives = 177/304 (58.22%), Query Frame = 1
Query:    1 KLPRGTNVLGSRWVFTNKEGPDGEILRRKARFVARFVAQGFTQVPGQDFLATFAPVARLETIRATLALVAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPRNWYGEFQTFILEELGFTASDADPCLF*CKAD-GMLTLIVVYVDDCVVAGSGSATVEEVIMQLKECFDIKDLGLATYLLGMHIDQDPVSRTLTVSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKGGTGKAAGATGAGKEALPPEGE--EQHEYREPVGSLLFLAQCTRPN 903
            +LP+G +V+G RWVFT K   DG I R KAR VA+    GFTQ  G D+  TFAPVA+L TIR  L+L A+    + Q D+  AFLH  ++E   +Y+RQPPGFE       +LV +L++SLYGLKQSPR W+ +F   +++ LG+    AD  LF   ++ G +T+++VYVDD +V G  S  +  + + L + F++KDLG   Y LGM I ++   + ++VSQRKY  ++LA  GM    P+ T  +  N                   K+AL  EG+  +   Y+  VG L++L+  TRP+
Sbjct:   27 ELPKGQSVVGCRWVFTVKYKADGSIDRHKARLVAK----GFTQTYGIDYTETFAPVAKLNTIRILLSLAANLDWPLHQLDIKNAFLHGDLEE--VVYMRQPPGFES---PDTQLVCKLNKSLYGLKQSPRAWFDKFSK-VVKMLGYRQGQADHTLFVKHSNHGHITILIVYVDDIIVTGDDSHEMTNIKLMLAKEFEVKDLGPLRYFLGMEIARN--RKGISVSQRKYTLDLLAETGMLGCKPSRTPLELGN-------------------KQALL-EGKPVDVGSYQRLVGKLIYLSH-TRPD 297          
BLAST of mRNA_S-ischiensis_contig130.3159.1 vs. uniprot
Match: A0A5P1ER89_ASPOF (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1ER89_ASPOF)

HSP 1 Score: 188 bits (478), Expect = 1.550e-54
Identity = 117/305 (38.36%), Postives = 168/305 (55.08%), Query Frame = 1
Query:   13 GTNVLGSRWVFTNKEG-PDGEILRRKARFVARFVAQGFTQVPGQDFLATFAPVARLETIRATLALVAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPRNWYGEFQTFILEELGFTASDADPCLF*CKA-DGMLTLIVVYVDDCVVAGSGSATVEEVIMQLKECFDIKDLGLATYLLGMHIDQDPVSRTLTVSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKGGTGKAAGATGAGKEALPPEGEEQHEYRE------PVGSLLFLAQCTRPN 903
            G  ++G +WVF  KEG PD + +R KAR VA+     ++Q  G DF   F+PV +  +IR   A+VAHF  ++ Q DV TAFLH  +DE  QI++ QP GF   G   E  V RL +SLYGLKQSPR WY  F TF+ E  G++ +  D C++  K  DG    +++YVDD ++A    + + E+  QLK  F++K+LG    +LGM I ++    +L +SQ KY  ++L RFGM  A P  T     +F + +                 L P+ EE+ +Y         VGS+++   CTRPN
Sbjct:    2 GQKIVGCKWVFKKKEGAPDTDSVRYKARLVAK----DYSQTEGVDFNEVFSPVIKHTSIRVLFAMVAHFNLELEQLDVKTAFLHGELDE--QIFMHQPEGFIVEGK--EDHVCRLKKSLYGLKQSPRQWYLRFDTFMFEH-GYSRNKYDSCVYHKKLNDGFFVYLLLYVDDMLIAAKDMSEINELKSQLKHEFEMKNLGATKKILGMEIHRNRREGSLFLSQEKYIKKVLERFGMLDAKPVKTL-LAAHFRLSAD----------------LSPQTEEEEQYMSCVPYASVVGSIMYAMVCTRPN 280          
BLAST of mRNA_S-ischiensis_contig130.3159.1 vs. uniprot
Match: A0A151RCT9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Phaseoleae TaxID=163735 RepID=A0A151RCT9_CAJCA)

HSP 1 Score: 199 bits (506), Expect = 6.820e-54
Identity = 120/309 (38.83%), Postives = 167/309 (54.05%), Query Frame = 1
Query:    1 KLPRGTNVLGSRWVFTNKEGPDGEILRRKARFVARFVAQGFTQVPGQDFLATFAPVARLETIRATLALVAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPRNWYGEFQTFILEELGFTASDADPCLF*CKADGMLTLIVVYVDDCVVAGSGSATVEEVIMQLKECFDIKDLGLATYLLGMHIDQDPVSRTLTVSQRKYAGEILARFGMDRANPALT--CGDFKNFVVRSKGGTGKAAGATGAGKEALPPEGEEQHE------YREPVGSLLFLAQCTRPN 903
            KLP G   L ++WV+  KE  DG       R+ AR V +GF Q  G D+   F+PV +L TIR  L++VA     + Q DV TAFLH  +DE  +IY+ QP GF E G   E +V RL +SLYGLKQ+PR WY +F++F+ +E GF   +AD C F  + +    ++++YVDD +VAGS    +  +  QL + FD+KDLG A  +LGM I +D    TL +SQ +Y   +L RF M  A P  T     F+    +S                   P+ EE+ E      Y   +GSL++   CTRP+
Sbjct:  791 KLPMGKKALHNKWVYRVKEEHDGS-----KRYKARLVVKGFQQKEGVDYTEIFSPVVKLNTIRTVLSIVASEELYLEQLDVKTAFLHGDLDE--EIYMHQPEGFSEKGK--ENMVCRLKKSLYGLKQAPRQWYRKFESFMHKE-GFKKCNADHCCFFKRYNSSYIILLLYVDDMLVAGSNMIEIRNLKKQLSKEFDMKDLGPAKKILGMQITRDKQKGTLQLSQAEYINRVLQRFNMSNAKPVSTPLASHFRLSTDQS-------------------PKTEEEKELMAKTPYASAIGSLMYAMVCTRPD 1070          
BLAST of mRNA_S-ischiensis_contig130.3159.1 vs. uniprot
Match: A0A2Z7AL20_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AL20_9LAMI)

HSP 1 Score: 190 bits (483), Expect = 7.200e-54
Identity = 119/306 (38.89%), Postives = 165/306 (53.92%), Query Frame = 1
Query:    4 LPRGTNVLGSRWVFTNKEGPDGEILRRKARFVARFVAQGFTQVPGQDFLATFAPVARLETIRATLALVAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPRNWYGEFQTFILEELGFTASDADPCLF*CKADGM-LTLIVVYVDDCVVAGSGSATVEEVIMQLKECFDIKDLGLATYLLGMHIDQDPVSRTLTVSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKGGTGKAAGATGAGKEALPPEGEEQHE-----YREPVGSLLFLAQCTRPN 903
            LPRG   +G+RWV+  K   + ++ R +AR V +    G+ Q  G DF   F+ V RL T+R  LAL A F   + Q DV TAFLH  ++E  +IY+ QP GF E G   E LV RL +SLYGLKQ+PR WY  F ++I+  LG+    ADPC +  ++ G    ++++YVDD +VAG     V+E+  QL   FD+KDLG A  +LGM + +D  +R + +SQ  Y  + L RF M  + P  T     NF + S               +  P    E+ E     Y   VGSL+F   CTRP+
Sbjct:   19 LPRGRKAIGNRWVYKIKRDGNNQVERYRARLVVK----GYAQKEGIDFNEIFSLVVRLNTVRVVLALCAVFDLHLEQLDVKTAFLHGDLEE--EIYMLQPEGFAETGK--ENLVCRLKKSLYGLKQAPRCWYKRFDSYIMS-LGYNRLSADPCTYFKRSGGNDYIILLLYVDDMLVAGPNKDRVQELKAQLAREFDMKDLGPANKILGMQVHRDRSNRKIWLSQTNYLQKFLHRFNMQDSKPISTPLPV-NFKLSS---------------DMCPSNEAERMEMSRIPYASAVGSLMFAMICTRPD 299          
BLAST of mRNA_S-ischiensis_contig130.3159.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU)

HSP 1 Score: 198 bits (504), Expect = 1.310e-53
Identity = 117/299 (39.13%), Postives = 168/299 (56.19%), Query Frame = 1
Query:    7 PRGTNVLGSRWVFTNKEGPDGEILRRKARFVARFVAQGFTQVPGQDFLATFAPVARLETIRATLALVAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPRNWYGEFQTFILEELGFTASDADPCLF*CKADGMLTLIVVYVDDCVVAGSGSATVEEVIMQLKECFDIKDLGLATYLLGMHIDQDPVSRTLTVSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKGGTGKAAGATGAGKEALPPEGEEQHEYREPVGSLLFLAQCTRPN 903
            PRG  V+G +WVF  K GPDG I + KAR VA+    GFTQV G D+  TFAPV++  +IR  LAL A +   V Q DV +AFL+  +DE  +IY+  PPGF+         VWRL +SLYGLKQ+ R WY + ++   E+LGF  SDAD  +F    +G++ +I +YVDD ++AG+   T++     L E F++ DLG A ++LGM I++D    TL++SQ +Y  +IL R GM    P  T  +  N  +                 E L     +   Y+  +GSL++    +RP+
Sbjct: 1027 PRGRKVVGCKWVFKIKRGPDGSIEKYKARLVAK----GFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDE--EIYMTCPPGFDHDAGS----VWRLRKSLYGLKQASREWYKKIRSEF-EDLGFERSDADHSIFVKVENGVILIIALYVDDMLIAGNDRTTIDAFKSTLSERFEMTDLGSARWILGMEIERDRARHTLSISQAQYIEKILERHGMANCRPVSTPME-PNLKL-----------------EKLSEATIDPKPYQSALGSLMYAMLGSRPD 1296          
BLAST of mRNA_S-ischiensis_contig130.3159.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT)

HSP 1 Score: 191 bits (484), Expect = 1.500e-53
Identity = 111/301 (36.88%), Postives = 168/301 (55.81%), Query Frame = 1
Query:    4 LPRGTNVLGSRWVFTNKEGPDG-EILRRKARFVARFVAQGFTQVPGQDFLATFAPVARLETIRATLALVAHFGAKVRQFDVVTAFLHAPVDEGLQIYVRQPPGFEECGPKGERLVWRLHRSLYGLKQSPRNWYGEFQTFILEELGFTASDADPCLF*CKADGMLTLIVVYVDDCVVAGSGSATVEEVIMQLKECFDIKDLGLATYLLGMHIDQDPVSRTLTVSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKGGTGKAAGATGAGKEALPPEGEEQHEYREPVGSLLFLAQCTRPN 903
            LP G N++G RWV+T KE  +G E L+      AR+VA+G++QV G D+  TF+P A + +I   + L A +   V Q DV TAFLHAP+D   +I++ QP GFEE    G +LV+RL +SLYGLKQS RNW      +++ + GF  +  D C++  +    + ++V++VDD ++A S +  + +    +K  F +KDLG  +Y LG+   Q   +  + ++Q++Y  +IL RFGM    P  T  + + F   S               E + P       YRE VGSL++L  CTRP+
Sbjct:  182 LPEGKNLVGGRWVYTIKEDANGLETLK------ARYVAKGYSQVHGIDYEETFSPTANITSITILMQLAAQYDLTVHQMDVKTAFLHAPIDH--EIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISD-GFVRNPVDHCVYQKQTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDCKPRTTPCE-QRFEGMSD-------------SEQVDPR-----RYREIVGSLIYLMTCTRPD 452          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig130.3159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TII5_9STRA3.950e-5838.41Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
UPI001C91A6838.200e-5636.67hypothetical protein n=1 Tax=Modestobacter lapidis... [more]
A0A7D9M8W6_PARCT2.270e-5537.21Retrovirus-related Pol poly from transposon TNT 1-... [more]
H3GAU1_PHYRM1.110e-5435.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2Z7B647_9LAMI1.410e-5440.13Cysteine-rich RLK (Receptor-like protein kinase) 8... [more]
A0A5P1ER89_ASPOF1.550e-5438.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151RCT9_CAJCA6.820e-5438.83Retrovirus-related Pol polyprotein from transposon... [more]
A0A2Z7AL20_9LAMI7.200e-5438.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2VV58_TRAPU1.310e-5339.13Retrovirus-related Pol polyprotein from transposon... [more]
A0A7D9HG25_PARCT1.500e-5336.88Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig130contigS-ischiensis_contig130:11252..12172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue1.6e-12
Seed eggNOG ortholog67593.Physo109041
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QH7I@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size921
Cds size435
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.2241857-UTR-S-ischiensis_contig130:11251..117371622815700.2241857-UTR-S-ischiensis_contig130:11251..11737Schizocladia ischiensis KU_0333UTRS-ischiensis_contig130 11252..11737 +
1695739861.0446715-UTR-S-ischiensis_contig130:11251..117371695739861.0446715-UTR-S-ischiensis_contig130:11251..11737Schizocladia ischiensis KU_0333UTRS-ischiensis_contig130 11252..11737 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.2377608-CDS-S-ischiensis_contig130:11737..121721622815700.2377608-CDS-S-ischiensis_contig130:11737..12172Schizocladia ischiensis KU_0333CDSS-ischiensis_contig130 11738..12172 +
1695739861.0572577-CDS-S-ischiensis_contig130:11737..121721695739861.0572577-CDS-S-ischiensis_contig130:11737..12172Schizocladia ischiensis KU_0333CDSS-ischiensis_contig130 11738..12172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig130.3159.1prot_S-ischiensis_contig130.3159.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig130 11738..12172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig130.3159.1

>prot_S-ischiensis_contig130.3159.1 ID=prot_S-ischiensis_contig130.3159.1|Name=mRNA_S-ischiensis_contig130.3159.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=145bp
MLTLIVVYVDDCVVAGSGSATVEEVIMQLKECFDIKDLGLATYLLGMHID
QDPVSRTLTVSQRKYAGEILARFGMDRANPALTCGDFKNFVVRSKGGTGK
AAGATGAGKEALPPEGEEQHEYREPVGSLLFLAQCTRPNGELAH*
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mRNA from alignment at S-ischiensis_contig130:11252..12172+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig130.3159.1 ID=mRNA_S-ischiensis_contig130.3159.1|Name=mRNA_S-ischiensis_contig130.3159.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=921bp|location=Sequence derived from alignment at S-ischiensis_contig130:11252..12172+ (Schizocladia ischiensis KU_0333)
AAGCTGCCACGAGGCACAAATGTCCTGGGCTCCCGCTGGGTCTTCACCAA CAAGGAGGGCCCGGATGGGGAGATCCTGCGGCGCAAGGCGCGATTCGTCG CGCGATTCGTCGCGCAGGGCTTCACGCAAGTGCCGGGGCAAGATTTCCTG GCAACGTTTGCCCCGGTGGCACGGCTGGAGACGATCCGCGCAACTCTCGC ACTGGTGGCCCACTTTGGGGCAAAGGTGCGGCAGTTTGACGTGGTCACGG CGTTTCTACACGCGCCGGTGGACGAGGGGCTACAGATCTACGTCCGGCAG CCTCCGGGGTTTGAGGAGTGCGGCCCCAAAGGCGAGCGCTTGGTGTGGCG CCTTCACCGGAGCCTGTACGGCCTCAAGCAGTCTCCGCGGAACTGGTATG GGGAGTTCCAGACCTTCATCTTGGAGGAGCTGGGCTTCACTGCGAGTGAC GCGGACCCGTGCCTCTTCTGATGCAAGGCAGACGGAATGCTCACCCTGAT CGTCGTGTACGTCGATGATTGTGTGGTGGCGGGGTCGGGCTCGGCGACGG TGGAGGAGGTCATCATGCAGCTGAAGGAATGCTTCGACATCAAGGACCTG GGGCTGGCGACGTACTTGCTCGGCATGCACATCGACCAAGACCCGGTGTC CCGCACACTGACGGTCTCGCAGCGGAAGTATGCGGGGGAGATCCTGGCAC GGTTTGGCATGGACCGTGCCAACCCTGCCCTGACATGTGGTGATTTCAAG AATTTCGTCGTGCGTTCCAAGGGTGGCACTGGGAAGGCGGCCGGGGCTAC GGGAGCAGGGAAGGAGGCGCTGCCGCCGGAGGGCGAGGAGCAGCACGAGT ACAGGGAGCCGGTTGGGAGCCTTCTCTTCCTAGCTCAGTGCACCCGGCCG AACGGCGAGCTCGCGCACTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig130:11252..12172+

>mRNA_S-ischiensis_contig130.3159.1 ID=mRNA_S-ischiensis_contig130.3159.1|Name=mRNA_S-ischiensis_contig130.3159.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=870bp|location=Sequence derived from alignment at S-ischiensis_contig130:11252..12172+ (Schizocladia ischiensis KU_0333)
ATGCTCACCCTGATCGTCGTGTACGTCGATGATTGTGTGGTGGCGGGGTC
GGGCTCGGCGACGGTGGAGGAGGTCATCATGCAGCTGAAGGAATGCTTCG
ACATCAAGGACCTGGGGCTGGCGACGTACTTGCTCGGCATGCACATCGAC
CAAGACCCGGTGTCCCGCACACTGACGGTCTCGCAGCGGAAGTATGCGGG
GGAGATCCTGGCACGGTTTGGCATGGACCGTGCCAACCCTGCCCTGACAT
GTGGTGATTTCAAGAATTTCGTCGTGCGTTCCAAGGGTGGCACTGGGAAG
GCGGCCGGGGCTACGGGAGCAGGGAAGGAGGCGCTGCCGCCGGAGGGCGA
GGAGCAGCACGAGTACAGGGAGCCGGTTGGGAGCCTTCTCTTCCTAGCTC
AGTGCACCCGGCCGAACGGCGAGCTCGCGCACTGAATGCTCACCCTGATC
GTCGTGTACGTCGATGATTGTGTGGTGGCGGGGTCGGGCTCGGCGACGGT
GGAGGAGGTCATCATGCAGCTGAAGGAATGCTTCGACATCAAGGACCTGG
GGCTGGCGACGTACTTGCTCGGCATGCACATCGACCAAGACCCGGTGTCC
CGCACACTGACGGTCTCGCAGCGGAAGTATGCGGGGGAGATCCTGGCACG
GTTTGGCATGGACCGTGCCAACCCTGCCCTGACATGTGGTGATTTCAAGA
ATTTCGTCGTGCGTTCCAAGGGTGGCACTGGGAAGGCGGCCGGGGCTACG
GGAGCAGGGAAGGAGGCGCTGCCGCCGGAGGGCGAGGAGCAGCACGAGTA
CAGGGAGCCGGTTGGGAGCCTTCTCTTCCTAGCTCAGTGCACCCGGCCGA
ACGGCGAGCTCGCGCACTGA
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