mRNA_S-ischiensis_contig13.3139.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.3139.1
Unique NamemRNA_S-ischiensis_contig13.3139.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig13.3139.1 vs. uniprot
Match: D8LUC9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC9_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 8.960e-13
Identity = 52/170 (30.59%), Postives = 82/170 (48.24%), Query Frame = 3
Query:  150 IYEKGFVRKDWVFTRKFLYKRDADKNGVGKVPLENTRAVTFP-SGEMGSWKI-------------KLDEKGVKPAKLVIEVGNMYEGKGKDRRELLVTYEIEISEGKFHPAAIRFLGEGQIFVEDMQTKELAEVTAKFSEKKDQIQRKRKKIGTFRPALEGQKPLLDRTY 617
            + +  F + DW  TR F +KRD  KNG   +     +   F  SGE+G WK+              L  +G+    LV+++          RR L+V+YEI IS G++HP++I F  +G I+V + + + +    A            RKKIG+F   L   +P++DRT+
Sbjct:   17 VQDGSFAKADWRITRDFFFKRDQAKNGADFLTARENKLARFNNSGEVGYWKLVRRPIPGAPKRQSPLGNEGIDY--LVLDIPEQG-----PRRNLIVSYEIPISNGRYHPSSIMFAQKGTIYVANAKEQLVGPAAAA-----------RKKIGSFSVDLPTLEPMVDRTF 168          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.3139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC9_ECTSI8.960e-1330.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:2974889..2984084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_004500.1
Exons4
Model size1080
Cds size567
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.3139.1prot_S-ischiensis_contig13.3139.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 2974945..2983627 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815697.5272775-UTR-S-ischiensis_contig13:2974888..29749441622815697.5272775-UTR-S-ischiensis_contig13:2974888..2974944Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2974889..2974944 +
1695739859.0825884-UTR-S-ischiensis_contig13:2974888..29749441695739859.0825884-UTR-S-ischiensis_contig13:2974888..2974944Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2974889..2974944 +
1622815697.5839682-UTR-S-ischiensis_contig13:2983627..29840841622815697.5839682-UTR-S-ischiensis_contig13:2983627..2984084Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2983628..2984084 +
1695739859.1384406-UTR-S-ischiensis_contig13:2983627..29840841695739859.1384406-UTR-S-ischiensis_contig13:2983627..2984084Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2983628..2984084 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815697.5374527-CDS-S-ischiensis_contig13:2974944..29751061622815697.5374527-CDS-S-ischiensis_contig13:2974944..2975106Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2974945..2975106 +
1695739859.096843-CDS-S-ischiensis_contig13:2974944..29751061695739859.096843-CDS-S-ischiensis_contig13:2974944..2975106Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2974945..2975106 +
1622815697.5498757-CDS-S-ischiensis_contig13:2978247..29784361622815697.5498757-CDS-S-ischiensis_contig13:2978247..2978436Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2978248..2978436 +
1695739859.1078782-CDS-S-ischiensis_contig13:2978247..29784361695739859.1078782-CDS-S-ischiensis_contig13:2978247..2978436Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2978248..2978436 +
1622815697.562246-CDS-S-ischiensis_contig13:2982141..29823081622815697.562246-CDS-S-ischiensis_contig13:2982141..2982308Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2982142..2982308 +
1695739859.1172268-CDS-S-ischiensis_contig13:2982141..29823081695739859.1172268-CDS-S-ischiensis_contig13:2982141..2982308Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2982142..2982308 +
1622815697.572489-CDS-S-ischiensis_contig13:2983578..29836271622815697.572489-CDS-S-ischiensis_contig13:2983578..2983627Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2983579..2983627 +
1695739859.129748-CDS-S-ischiensis_contig13:2983578..29836271695739859.129748-CDS-S-ischiensis_contig13:2983578..2983627Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2983579..2983627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.3139.1

>prot_S-ischiensis_contig13.3139.1 ID=prot_S-ischiensis_contig13.3139.1|Name=mRNA_S-ischiensis_contig13.3139.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=189bp
MARRWLCLIAAAVALLVPPAVDGKVVPLGANIYEKGFVRKDWVFTRKFLY
KRDADKNGVGKVPLENTRAVTFPSGEMGSWKIKLDEKGVKPAKLVIEVGN
MYEGKGKDRRELLVTYEIEISEGKFHPAAIRFLGEGQIFVEDMQTKELAE
VTAKFSEKKDQIQRKRKKIGTFRPALEGQKPLLDRTYR*
back to top

mRNA from alignment at S-ischiensis_contig13:2974889..2984084+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.3139.1 ID=mRNA_S-ischiensis_contig13.3139.1|Name=mRNA_S-ischiensis_contig13.3139.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=9196bp|location=Sequence derived from alignment at S-ischiensis_contig13:2974889..2984084+ (Schizocladia ischiensis KU_0333)
GACACGCGGACGCGCGCTGGCCGCTACAGGTGTGGTCCCTGGACAAGGCC GCCGGGATGGCTCGTCGCTGGTTGTGTCTGATCGCCGCGGCCGTGGCACT GCTGGTACCACCAGCAGTGGACGGCAAGGTGGTGCCATTGGGGGCCAACA TCTACGAAAAGGGCTTTGTGAGGAAGGACTGGGTGTTCACAAGGAAGTTC CTCTACAAGCGCGACGCGGTGAGTCTGAGGGTTCATCCGCGCAGGGTATT CGGCGCCATGCCTATGCTTCCCGGGGGGCTGCTACAGAGGGCCGTGGGCG CGTCTGTCCTGTCGGAGGTTGACGATCGCTCTCCAGTCATGCGCTCTGCC TGGGGACCTGGGGCCAATTATATCTCACAGGGGACCGGGCCCACGCATTT CGTTGGTTCGCAATTCCCGTTCCTCGACGTCCCACGCGCGCTTCATTGTA CTGTGCTGACTGGTTTGGTCTTCTTGCCAGCACATGTTGCAACGTACGCA GCGCCTGCACGGTTCTTCCACGGTTCGGTCTCCGGGCCCCTTGCCTCGGG AGAGCTTGAGTGACTCCTCCAGACGGTCGTATAAGCTGCAATAGTCCGCA ACTACTTCTTAGCCCTTTAACCCCTGGGGTCTGTATAATCATAGGGCTTT AGTGTGTACGTCCAGGGCAAACCCGAAGTTTCGACTTAGGGCTGTCGGCA TTGCACGCACGGTGATGTCGCAAGACAAACCAATGAGTTCATACGTCCAG TTTAGCAGGGGTAAAAGGGCTAAGGACAACCACCTGGACTTACAGTGTTC GTGGCCGCAATTGAGCCTCGGGCAGGCCCTGCTTAGCCTCGATGAGGCCT TGAGAAGTCGCCGTGGTTTCGTGAAGCCTTATGTGACAAAACTGGTACAG ACAAGTAGCAGTGCCGAGCGCTCGACCACAAAAAAACACCCCAAACGGTG TTTGAGTGCCCGCACGACAGATGACTTGAGTGCCAGGATAGTCGCGGGCA AGGGCCAGTGGGGGCGAAATGGGGCCGATCGGTGGAGACAGCCAACGATT GCAGAGGAAGCGCATTTCGAACATGTTTTCATTTTTTATTTCGAGGCATG TGAGTTCCGGGGCCCGTCGCAAACAGAGGACGTCATCGGAAGAGCTACCC CTTCTTCCATTCGGTAGTGCGATGTGATGTGATGTGATGTGATGTGTACT CTAATTTACTGTAGTGTGACATCACATCACATAGAAACCGGAGACCTCAC CAGAAGAGATAGCCCTTCTTTCACTCGCCGGGCATGGACACATATGCTAG CAAGGAAGCAACAGGCAGGGGCAATGCAGGCAACTACTGTACTCGAGTAC TGTGTTTTTTCTCTGAGACTGCGTGCAGTTGTACAGTAGTTCAGCGCCCC TTGGTACTCAACGGGTTGAGCCGCTGGACGTAGAGAGAGAGGGAGGGAGA GAGGGGGGGGAGGGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG GGAGAGAGAGAGAGAGAGAGCAGAGAGAGAGAGAGACAGACAGACAGAGA GACAGAGACAGAAGAGAGGGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAG AGAGAGAGAGAGAGCAGGAGAGGGCGAGAGAGGGAGAGGGAGAGAGAACG AGAAAGGGGGACAGAGATATATCTTGAAACCCAGTCCCCTAACTACTTGG GTTCTGGCAACTCAAGGTCTCCTTAGCTACTTCGAAGTACATACAAACAG TGTGTGTGTACATACTGGCTTCGCTGTCTTGCGACAGCCTTGCATGCTGT AGTTAGCCGACAGCCCACAGTCAAAACTTTGGGTTTGCCCTGCGACAGGA GTGGCTTTTCTTGCCACGGACTCTCGTATGCCGACTAGGCCGGGACGGAG TATATGCTGGGTTTGTTCCGCCTTGGCCAGGCCCGATAACAACATGATAC ATGCACTCCAAGCTTCGACTTAGGGCTGTCGGCATTGCACGTACGATTAT GTCGCAAGACCAGCCAAGTACACGCTGTGCTTGCCGTAAGTCCTGAGAGA CTATTGAACACGCGCCATCAAGTGCTGCATACGTCCAAGTACAAATATAT TGCACGCGCCTTCCAAGTATATGTACTCACGTGATGCTTGCCGTAGTCCC GAGACCATTGACCCGAAGTAGATATGTACTGTATACTTCCGAAATGTATA TACTGTAGTATATGCTCCATCTCGCACGAGGCGCGGGGTCAATGGTCTCG GGACTACGGCAACCATCACGTGAGTACATATATATATTGCTTCGCCGCTG ACCACACGCCATTGGGCGGCAGGGTAACATATATATATACTACATAGTAC ACATACTTCGACGGCGCGTGCAATATATGGCGCGTGGTGAATGGTCTGGG GACTACGGCAAGCACTGTTGGGCGGAGTGCATATATATATATATTGTATA TATGTACTCACGTGGTGCTCACCGTAGTCCCGAGACCATTGACCACGCGC GTCGTTCGAGACGGAGCAGGACCCCTCCCTTCCCTGGCAGAGCCAGGATG GATACTTCGTATATATGCTTGGGAAGCGCATACACACTGTATGACTTGAC TAACACACACCGGGGGATCATAAGGCAGGATGAAAACGGCAAGTCGCGGT GCACGAGTACTTGGCAAGCACATAGTTGAAGTGCACGTGTCTACGGCCAA CTCTATTGTATGTGGGGGCATCGTAAGAAAGTAAAACGGGCAGGGCAACG TGCCCCTGGCGCTGAGCCGCATGGTGGTCCTCCCGGTGGTATGTACTTCT ACATATACATACCCACTGCTACTGGCCGAAGTACTTGGTACGAGTACATA GTTGAAGTACACGTGTCTATGGCTAACACACACCGGGGGGGGGGACCGCA AAGCAGGATAAAAACGGGGTAGGCAAGGTGCCCCTGGAGCTGAGCCGCGG GGTGGTCCTCGCGACGATATGTTGTATGTACTTGGCAAGCACTTACTGTA CACGCGTGATACGAAGTATATGACGAACACTACTATATATGGGGGAATCG TAAAAAGCAGAATAAAAACGGGGTAGGCAAGGCGCCCCTGGAGCTGAACC GCGGGGTGGTCTTTTTAACAGTGGCTAGCACTGCTAGGTGTGAGTGCATG TATGTACGAGTACTCGGGAAGCACATGCATTACACCTGTGTAACTCTAAC CCACACCGGGGGGGGAATCGTAAGAAAGGAGGATAAATATGGGCAGGGCA AGGTGTATGACTAACACGCGCAACAAACACAATCGTAAGAAAGGAGGATA AATATGGGCAGGGCAAGGTGTATGACTAACACGCGCAACAAACACAATCG TAAAAGCAGGATAAAAATGGGGTGGGCAAGGTGCCGCTGGAGAATACCCG TGCGGTGACCTTCCCGAGTGGCGAGATGGGCAGTTGGAAAATCAAGCTGG ACGAGAAGGGCGTCAAGCCGGCCAAGCTTGTCATAGAGGTTGGCAACATG TACGAGGGGAAGGGGAAGGACAGACGGGAGCTGCTCGTCACGTACGAGGT GAGAAGAGGGATTCGGTTAGAAGAGGGGTTTGGTTTTTGTTTTGGTTAGG GTTTCAGTCAGTCCACGTAGTCAAAAACACGTTTTTCCAGGTAACAGGGG CACCTTCGCCGTCCATGTTCGACGGTGTGGTGCTGAGGAGATGGGATTGT GTTGCCCGTGCCCCCGGCTCATTCTCGCCGATTTGCAGCGCGATCGGGGC AGCAGTTCAGCCGTTGTCGACATCTGAAAAGTATCCGAAAATCATTTTTT AACTAGTTCGCTTGACTGCAGGGTTAGGGTTAGGGTGTAGGGTCGCGGTT AGGGAAAGTTTGTCATAGAGGTGAACGACGTGTGGGAGGGGAAGGGGAAG GACAAACGGGAGCTGCTCGTCACCTACGAGGTGAGTGAGAGAGGGGTTTG GATAGGGATAGGGTTAGGGTTTAGGGTTTAGGGTTACGAGGAGGGCGTCA AGCCGGCCGAGTTTTGTCATACTTAGAGGTGGACGACGTTTGGGAGGGGA AGGGGCAGGACAAACGGCAGCTGCTCGTCACCTACGAGGTAAGTGAGGGG TCGAAGGGGGGGGCGGTGATTCATATATATTGCGGGTGAAAAGAAGCGCT TCTGGTGAGGTCACCACCTTGCTATAGGTTGTTGGGACGGGGCCCGGAAC TCGCATGCCATCCAAATACTCCAAAAACTCGCAACAAGGTAAACCGGCAC GTGTGTTATTGAGTATTCTCGTATTACTGTAGTGGTTATCCCATTGAAGG AATGAGTGTTCGTATGTTAGTGGTTATCACCTCAAAGAATTACGAGTACG AATCGAAGGGGGGACATCGTGGCGTTCCCCGGGGGACTTGGCCCGTGCAC GGCCTGGCAAAAGAGGTGCGAACGCCGCGTGCTCCTCCATCACACCTTCT GTACAGTCAAGCGAATTAGTTGAAGCATGATTTTCGGATTTTCGGATATC GACAATGGCTGAACTGCTGCCCCGATCGCGCTGCAAATCGGCGTGGAATG AGCCGGGGGCACGAGCAAGACATCCCCATCTCCTCAGCACCATACTCTCC AAAACGGACGGCGAAGGTGCCCCTGTTATTGGGAAAAACGATTTTTTAAC TACGGCGACTGACTGTAGTCGGAGCGCGAGAGTCCATGGGGTTTGCTTGC CGCCAAACATAGGCAAGGAGAAGCGGACGCGGTGTTAGCCATCAGCCGTT CCTTAGTATATATATTTTTGATCTTTTCGCGGCGCTTGTAGTTATTGCTG ATCGCTTTTATTCAACCAGTACGAGTGCAAGCTACTGAACCCGTACGAGG CGAGGAGTGAGCGCTGCGTTGGCTATTGCTTCCAAGTATATCATGTACTT CGTACTTCAAAGCTTATGTAATCACACCCGACAGTGCTTGCCGTAGTCCC GAGGCGTTTACGCCTATAGCACCTCACACCTAACAGCGCTTGCCGTACTA GTAGTCCCGAGACCGTTGACCGCTATAGCGCCTCACACCTAACATTGCTT GCCGTAGTCCCGAGACCGTTTACCTCTGTAGCCCCTCACGCCTAACAGTG CTTGCCGTACTAGTAGTCCCGAGACCGTTGACCTCTATAGCGCCTCGGCC GAGATGGAGTGTGCTACATACCCGGCAGTTTCAACCATTACGAGTCCCTC GCCGCCTTTAGGAGGTGAGAGGTTCATGCGGCGCTTAAGTATCGGTAGTC GCCTACGAGGTACTGTATATACATGTACTCATCAGCTTGTCTCGCGACAT AACCACGTGTCTACAGGACTTGGGTATCCTCGAAGCACAGTCTCCCCAAC GGCTACAAAAAGCAGTATCCTGTACAGTATGTACTCTGTACTAACCGGCT TGTCTTGTGACATAGCTTTGCATGCTTTGCCGACAGCCCTAAGTCGAAAC TTCGGGTTTCCCTCCGACAGGCGTAGCTATTTAGCCATGGACTCTCGCAT CCCAAATACCGCCTACGAGGTGGGGCGTTTTCAGCCAGCACAGGTTCCTC TGCTGCGTCAGTTCCCTGCTCCGTCTCGATCGAGGCGCGTAGTCAATGGT CTCGGGACTACGGCAAGCACAGCATGAGTACATACTACGTACTGTAGTAT ATATATATGTATATATACAAGTCCCTCTGCCGGGCGAGGGAGGGTGCCCG CTCCCTCTCGATCGATTGGCGGGGACAATGGTCCATTGATCGCGCGCCGT CAAGGGCGGAGCCATGCTGTACTTCGATGTGATATACGAAGTATCTGCTC CGTCTCGACCGAGGCGCGTGGTCACTGGTCTCGGGACTACGGCAAGCACA ATGTGACTACATATATATATATATGCGCTCCAAACTGCGGTAGCTGACAT CCCACGGCATCTCAAATGATAGTCATTCGCAGCCGGAGATCCAAGTCACC GAGGGCAGATCAGGCCCCTCCGTGACAGCGAAAATGATACTTGGCGTGAC GTGATGTGATGCGATGCGTGGAAGTATACCCCTCTAGGACACCATCGTTG GACATGACATGCTGAAGTGTCATCGCATCACAAACAACGCCTACTACTGG CAAGGTCTACAGTAGGTGGTACTAGGTAGTTCCTTTGGCCTTGAGAGAAA CAATTGAGTACGAGTATGCTCTTTCCTAACGTTTTGTTCAACTCACCGAA TATGTATCACGTCCAAACCTTGTACCTCAGCCTTCAGAACAAATCTCAAG TTGAAGGTCAGCACGTTGAAGTTGAAGGTTTTTCGGAACTTTCTGGTGGC CCCGACTGTAGGTGGCCGAGGGCAAGTTCCACCCCTCCACCGTGTACAGT ACGAGAACACAAGTATACCTGTGCTTGTGGCAAGTAGTGTACATGCTCCA AAGAACAGCTGCAGCAAGCCAATGGTCATTGTGGTTCTTAGTGATGTGAT GTGTACCGTTTGCAAAGTGTCGTTTGACGTCACATATCCTGTCATGACGC GTTGCATGCACTCCTCGCTCCTCAACACCTCGGCAGATTGAGATCAGCGA GGGCGAGTTCCACCGTTGCACACTGTCGTTTGACACCACATCGTACCACA CCTTGTATGCGCTCCTCAATCATGCGTTGTGTGCTCTCCTCGCTCATGGG CAGATTGAAATCAGCGAGGGCGAGTTGCACCCCCCGCCATCCGCTAACCC TAAGTGGCACACTGTCGTGTGACATCGAGGTGTTCAACGCGAGGGGGGGG GCAAATCACCCGGTTCCTTACATGCCACCGCTTGGCTTTCCTGCCCCAAC TCGAGAACAAATGCGAACTTGCGAGTGAAAATGTGTAAATCGTCTGGTCG TATCTTCGTGCACATGTTGGCAAAGTTTCGTGCTGCAGTTCAAAGTTTTT CCCGAGGACAGGGTGAGCAGCGGCCGCGGCTCATGTAAGGTTCCCACCCC CCGCCTCGCGTAGAACGCTTCATCACATCGCACCACCGTTTGTATGCACT CCTCACGCATATGCCGTTGCACACTGTCGTTTGCCACACTGTCGTTTGAC ATCACATGGCATCACACGTTGCGTGCACTCGCTCCTCACTCCTTGACAGA CTGAGATCAGCGAGGGCAAAGTCCACCCCGCCGCCAATGGTCGTTGTTGT TCTCAGTGATGTGATGCGTACTCGAGTACCGTTTGCAACACTGTCGCTTG ACATCACGTCGCGTCACACAAATTGTATGCACTCCGCACTCACTCCTTGA CAGATTGAGATTAGCGAGGGCAAGTTCCACCCCGCCGCCATCCGCTTCCT CGGGGAGGGGCAGATATTTGTGGAGGACATGCAAACCAAGGAGCTGGCCG AGGTTACCGCCAAATTTTCTGAAAAGAAGGACCAGATCCAGCGCAAGCGC AAAAAGATTGGGACCTTCAGGTAAAGGTTTTCAAGTACTGCGAAGTATAT TTGAATGAGGTACTGCAATCTCACTTCCCCCCTCCCCCTCTACCCCTACC CCTCTCCCTTTCTCCCTTCCCCTCCCCATGCCCCTCTCCCCCTCCCCCGC TCCCACCTCCTCCCCCTCCGCTCCCCATCATCCTCCTCCTGCTCCTCCTG CTCCTCCCCCCCCCCCGCCTCCCGCCTCTGCCCTTTCCCACACAATCCTT CCGTGCGAGCTATGGAAGGTTGTTGCCACTTTTGACGTCTGTAGTGATGT GGCCTGCACCTCGCCCTGTGTTGTTCCTGCTAATACTGCAGTGTCACCTG TGCCAGCGCGGAGTCGAGTGTGCTCGTCGGTTTTGAGCGGTCGTATTCCC GTTGGTATATTCCTGTTGATAGTGCCCATCTCACCTGTGCCAGCCCTGCC CTTCTTTATCAATTATTGGGATGGCATGGAGGCATTCTACGCGAGGCCTG GGGTGGGAACCCTACATGAGCGGCGGCCGCCACTCACCCTGTTCTCGGGA ACCACCTCGAACTGCAAGGACGACACTTTGCCAACGTGTGCACGACGATA CGACCAGACGACGTACAAATTTTCACATGCCAATTCGCATTTGTTCTCGA GTTGGAGCTGGAAAGCCGAAGCAGTGGCATGTAAGGAACCTGGTGATTTG CCCCCCCCCCTCGCGTAGAACACCTCATGCGAGTTCATAGTTAGGAGGTG GCCTCTACTTTTGCGAGTTCTGGGCCCCCGCACGGAAGCCCTTCCTTCAC CCGCTGCAGCTCGCAGGACAAATATTGCTGTGAAGAAGAAAACGAAGGAT TGATATGAACAGAGAGAAGGGGGCAGGGTCGCTTGTGCCATGCAGCGGGA CACGCGGGATCGGCGATGCAGAGCGAAGCCGCAGCGTAGCCGAGATCGTG CAGAAGGAAAAACATGCGTCCCTGCCCTCAAGCCCAGTGTTCGCCCCCGT CGTTTGAGACACCTCGAGCTGTCGATGCATTTGGAAGCTCCATGGGCAAA ACCGACCGACCTGCACGGCCTTGAACACCGAGCGGCGAAAATGATACGAA AATGACGGAGCGGCGAAAGCTACGGTGTTTTAGACCGACCGCAGTCGATG GAAAAAAAACATGGTACTTGGAGAAGTATTTTAGTACAGGGGCCCCCGAG GGAACCACCAACCACACACCATATATCAAGCTCGGCCGGTAGCTTGACTC GAATCGCGCCCCGCGATTTGTGCGCTGTCCCTGCCCTCAGGCCCGCCTTG GAAGGGCAGAAGCCTCTCCTTGACCGCACCTACCGCTGACTCGGAAGGAA GCGTCTCCCACACCATAGCCCGAGGGGGGAGGGAGGCTCTGCCCCTGGAC AAACTCGGAGGAGCCCGCCGCGTGCACACCCTCTCAATCTCTGGGAGAGG CGTGCACTGTTATTGCCAGTAGCGACGCATGTGTTGTAATGTCCGCGGTG TGTAAGATTTGGTGCACCTGAGCAGAGTATGTGCAAGCAGGGGTGGTACT GCCTGTATGCATTGCTCTACTACCGTACGTACGGCCTACTGTACAGTACT GCAGTAGCTGTACCGGCTGTGGGTGTCAAGCGTTGCTCCTGGACTGCGTG GGGTGAATGTTCAACCCACCAGTCCCGGGGCATTCTTCCAACAATTCAAT AAATGAACGTCAGACATGAGGATGCAAGTTGCCAGCAAGACAGCCATCCC CGCTCACCAATTTTGAACCGTTTCCAATGGATCAACACACCACGCA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig13:2974889..2984084+

>mRNA_S-ischiensis_contig13.3139.1 ID=mRNA_S-ischiensis_contig13.3139.1|Name=mRNA_S-ischiensis_contig13.3139.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1134bp|location=Sequence derived from alignment at S-ischiensis_contig13:2974889..2984084+ (Schizocladia ischiensis KU_0333)
ATGGCTCGTCGCTGGTTGTGTCTGATCGCCGCGGCCGTGGCACTGCTGGT
ACCACCAGCAGTGGACGGCAAGGTGGTGCCATTGGGGGCCAACATCTACG
AAAAGGGCTTTGTGAGGAAGGACTGGGTGTTCACAAGGAAGTTCCTCTAC
AAGCGCGACGCGATGGCTCGTCGCTGGTTGTGTCTGATCGCCGCGGCCGT
GGCACTGCTGGTACCACCAGCAGTGGACGGCAAGGTGGTGCCATTGGGGG
CCAACATCTACGAAAAGGGCTTTGTGAGGAAGGACTGGGTGTTCACAAGG
AAGTTCCTCTACAAGCGCGACGCGGATAAAAATGGGGTGGGCAAGGTGCC
GCTGGAGAATACCCGTGCGGTGACCTTCCCGAGTGGCGAGATGGGCAGTT
GGAAAATCAAGCTGGACGAGAAGGGCGTCAAGCCGGCCAAGCTTGTCATA
GAGGTTGGCAACATGTACGAGGGGAAGGGGAAGGACAGACGGGAGCTGCT
CGTCACGTACGAGGATAAAAATGGGGTGGGCAAGGTGCCGCTGGAGAATA
CCCGTGCGGTGACCTTCCCGAGTGGCGAGATGGGCAGTTGGAAAATCAAG
CTGGACGAGAAGGGCGTCAAGCCGGCCAAGCTTGTCATAGAGGTTGGCAA
CATGTACGAGGGGAAGGGGAAGGACAGACGGGAGCTGCTCGTCACGTACG
AGATTGAGATTAGCGAGGGCAAGTTCCACCCCGCCGCCATCCGCTTCCTC
GGGGAGGGGCAGATATTTGTGGAGGACATGCAAACCAAGGAGCTGGCCGA
GGTTACCGCCAAATTTTCTGAAAAGAAGGACCAGATCCAGCGCAAGCGCA
AAAAGATTGGGACCTTCAGATTGAGATTAGCGAGGGCAAGTTCCACCCCG
CCGCCATCCGCTTCCTCGGGGAGGGGCAGATATTTGTGGAGGACATGCAA
ACCAAGGAGCTGGCCGAGGTTACCGCCAAATTTTCTGAAAAGAAGGACCA
GATCCAGCGCAAGCGCAAAAAGATTGGGACCTTCAGGCCCGCCTTGGAAG
GGCAGAAGCCTCTCCTTGACCGCACCTACCGCTGAGCCCGCCTTGGAAGG
GCAGAAGCCTCTCCTTGACCGCACCTACCGCTGA
back to top