mRNA_S-ischiensis_contig13.3137.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.3137.1
Unique NamemRNA_S-ischiensis_contig13.3137.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.3137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:2955971..2956371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size401
Cds size390
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.7741084-UTR-S-ischiensis_contig13:2955970..29559811622815679.7741084-UTR-S-ischiensis_contig13:2955970..2955981Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2955971..2955981 +
1695739846.0043416-UTR-S-ischiensis_contig13:2955970..29559811695739846.0043416-UTR-S-ischiensis_contig13:2955970..2955981Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2955971..2955981 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.7856512-CDS-S-ischiensis_contig13:2955981..29563711622815679.7856512-CDS-S-ischiensis_contig13:2955981..2956371Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2955982..2956371 +
1695739846.0167136-CDS-S-ischiensis_contig13:2955981..29563711695739846.0167136-CDS-S-ischiensis_contig13:2955981..2956371Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2955982..2956371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.3137.1prot_S-ischiensis_contig13.3137.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 2955982..2956371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.3137.1

>prot_S-ischiensis_contig13.3137.1 ID=prot_S-ischiensis_contig13.3137.1|Name=mRNA_S-ischiensis_contig13.3137.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=130bp
MACAWAPPRLLCWTGSGRALPVSLPAHASYVCAGRGATWALQVEAEHGGQ
GGDTNRGGRQGPGRVVRGGGHGQDRSPRHLAGRSRRVDSPRVARSKVLNR
RLGELGRQRKWQEVLRALSEAKSAGVQMNT
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mRNA from alignment at S-ischiensis_contig13:2955971..2956371+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.3137.1 ID=mRNA_S-ischiensis_contig13.3137.1|Name=mRNA_S-ischiensis_contig13.3137.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=401bp|location=Sequence derived from alignment at S-ischiensis_contig13:2955971..2956371+ (Schizocladia ischiensis KU_0333)
GTGGGCCAAAGATGGCCTGTGCATGGGCGCCGCCACGTTTGCTCTGCTGG
ACGGGGTCCGGGCGCGCATTGCCCGTCAGCCTTCCCGCACATGCATCCTA
TGTGTGTGCAGGGCGGGGGGCAACATGGGCCCTGCAAGTTGAGGCAGAAC
ACGGAGGACAGGGAGGGGACACGAACAGAGGGGGGCGCCAGGGACCGGGC
CGAGTCGTGCGCGGTGGGGGTCATGGTCAAGACCGGTCACCAAGACATCT
TGCAGGCCGTTCTCGGCGAGTAGACTCGCCTCGGGTCGCAAGGTCAAAGG
TCCTCAATCGAAGATTGGGTGAGTTGGGCCGACAGCGCAAGTGGCAAGAG
GTCCTGCGGGCCTTGAGCGAGGCCAAGTCCGCTGGGGTTCAGATGAACAC
G
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Coding sequence (CDS) from alignment at S-ischiensis_contig13:2955971..2956371+

>mRNA_S-ischiensis_contig13.3137.1 ID=mRNA_S-ischiensis_contig13.3137.1|Name=mRNA_S-ischiensis_contig13.3137.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=780bp|location=Sequence derived from alignment at S-ischiensis_contig13:2955971..2956371+ (Schizocladia ischiensis KU_0333)
ATGGCCTGTGCATGGGCGCCGCCACGTTTGCTCTGCTGGACGGGGTCCGG
GCGCGCATTGCCCGTCAGCCTTCCCGCACATGCATCCTATGTGTGTGCAG
GGCGGGGGGCAACATGGGCCCTGCAAGTTGAGGCAGAACACGGAGGACAG
GGAGGGGACACGAACAGAGGGGGGCGCCAGGGACCGGGCCGAGTCGTGCG
CGGTGGGGGTCATGGTCAAGACCGGTCACCAAGACATCTTGCAGGCCGTT
CTCGGCGAGTAGACTCGCCTCGGGTCGCAAGGTCAAAGGTCCTCAATCGA
AGATTGGGTGAGTTGGGCCGACAGCGCAAGTGGCAAGAGGTCCTGCGGGC
CTTGAGCGAGGCCAAGTCCGCTGGGGTTCAGATGAACACGATGGCCTGTG
CATGGGCGCCGCCACGTTTGCTCTGCTGGACGGGGTCCGGGCGCGCATTG
CCCGTCAGCCTTCCCGCACATGCATCCTATGTGTGTGCAGGGCGGGGGGC
AACATGGGCCCTGCAAGTTGAGGCAGAACACGGAGGACAGGGAGGGGACA
CGAACAGAGGGGGGCGCCAGGGACCGGGCCGAGTCGTGCGCGGTGGGGGT
CATGGTCAAGACCGGTCACCAAGACATCTTGCAGGCCGTTCTCGGCGAGT
AGACTCGCCTCGGGTCGCAAGGTCAAAGGTCCTCAATCGAAGATTGGGTG
AGTTGGGCCGACAGCGCAAGTGGCAAGAGGTCCTGCGGGCCTTGAGCGAG
GCCAAGTCCGCTGGGGTTCAGATGAACACG
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