mRNA_S-ischiensis_contig13.3127.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.3127.1
Unique NamemRNA_S-ischiensis_contig13.3127.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.3127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:2862784..2866609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2451
Cds size1560
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.3127.1prot_S-ischiensis_contig13.3127.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 2862784..2865718 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.8244903-CDS-S-ischiensis_contig13:2862783..28642161622815676.8244903-CDS-S-ischiensis_contig13:2862783..2864216Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2862784..2864216 -
1695739844.8046155-CDS-S-ischiensis_contig13:2862783..28642161695739844.8046155-CDS-S-ischiensis_contig13:2862783..2864216Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2862784..2864216 -
1622815676.837125-CDS-S-ischiensis_contig13:2865591..28657181622815676.837125-CDS-S-ischiensis_contig13:2865591..2865718Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2865592..2865718 -
1695739844.8140242-CDS-S-ischiensis_contig13:2865591..28657181695739844.8140242-CDS-S-ischiensis_contig13:2865591..2865718Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2865592..2865718 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.849746-UTR-S-ischiensis_contig13:2865718..28666091622815676.849746-UTR-S-ischiensis_contig13:2865718..2866609Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2865719..2866609 -
1695739844.8242342-UTR-S-ischiensis_contig13:2865718..28666091695739844.8242342-UTR-S-ischiensis_contig13:2865718..2866609Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2865719..2866609 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.3127.1

>prot_S-ischiensis_contig13.3127.1 ID=prot_S-ischiensis_contig13.3127.1|Name=mRNA_S-ischiensis_contig13.3127.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=520bp
MGGAGEAPLELKHLLAGGLAGAATAVLANPLEVVHASRHVEHCKDGPGHR
PGGGTLSAWTSTSTRLKTLLLRGVAACAAFRFTKAGVACAVVAALRPVWE
WDYSDHSDRHSASHHTDAAAAANSAAAAARGADSVSSPAWSSPGSSTTCG
ATGTPSFSEAKSAKSPLPLPPQRLLHSGPGSSGSDGRGTFRFSVAPPPLG
WGPPSYWHVVTTTTTSLSTPSRTPASAATASGARPNWATESGPEPLGAHV
LQQGPGPGEPESAAGPGPGGPPCMTHGGPEPQALAADSTAPAATAAATAS
PQVPVAAAAARGEPGLELHWHPGDLDHHGRALLCGVAATLVAVVAAHPWD
VARRRAAWRSPGSGSGSSLARRLGPGPGPGAGRSLAVSSSSSSPSSSSSS
SSSSGLQSKPLRISESGSRLEGVRPGRPEQPGPLGPVQGRGPARDWWLPE
SLARRLRGLAGGPGGFRVGSGFSGFGGQFAALGGAAAKSVVGLAVAYVCG
AGLVGGLVHARLAQAGAAQA
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mRNA from alignment at S-ischiensis_contig13:2862784..2866609-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.3127.1 ID=mRNA_S-ischiensis_contig13.3127.1|Name=mRNA_S-ischiensis_contig13.3127.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3826bp|location=Sequence derived from alignment at S-ischiensis_contig13:2862784..2866609- (Schizocladia ischiensis KU_0333)
CGTGCGTGATGAGGCCCCGAGATATGGGACGGGGCCCTCGCGAACCACAG
CAGCTTGCGTACTGGGTTTGCTCTGACCCTCTTTCCACGTAGATGCGCGA
TGTGCGAACATATGTACTGTAGTATGCGGTCTGTTGCGCCCGGATGTGCG
AGCGGCGAATTGCGAGCAATGTCATGCAATTGTGGCCTTTGTTGTGCCTG
CCTGCTGTACTGTAAATACGTGTGTTCTCTGTCGGAGGGACCACTGTTTG
AGATCTTTGGTGATGTGGGCTGCGCCCTGCCCTGTGTTTTCCTGTTGGCA
ATGTAGCCAGTAGAAGCGACACTCTGTAATTCGCGCACTCATTAACACTT
CTGCCCCAGGTGTTAACTACTACTGTAGTACATGGGACTATAGGGAATCA
GTACGCGTGTACACTGTCCCGGGGGTCAAAGGGTTAAGAGCCCTCACACC
CAACAGAGGCAAAGCAGTTTAACCCTTCTGCCCCAGGTGTGTGTGGGACT
ATAGGGAATTAGTATGAGCGTACACCCTCCCACGGGTCAAAGGGTTAAAG
CGCATAGCTTCGCTATTACCGCCTGTCTAAGCCAAGTGAGGCGTTTATCA
TTACACTCTCGTAGTCGACAACGCCGTGCCACGCTTTGACACGATGTGAA
CAAATACTCACAACGTTTTTTAAGCCTTGAGAAGACCTTTTTTCGTCTCT
TTTCTAGTCGTTTGCGTTTGTGCAGTTTACTTCGCCCTATCCCACAACCC
CACGTCCCGCTGCCCTCCGTCCTCCCTCAGGCGATCTTTTATTGCCGCCT
GCTCCAGCCGGACAACCCCCTGCAGGAGCTCCTTCGCTCGGGCTGGGCCG
GCAACGCCTCCATCAACCAAGGGGCGGGGACGGCAGAGACGATGGGGGGC
GCCGGAGAGGCCCCGCTGGAGCTGAAGCACCTCCTGGCCGGTGGGCTGGC
GGGGGCGGCCACGGCTGTTCTCGCCAACCCGCTGGAGGTTGTGCACGCCT
CTCGGCACGTCGAACACTGTGAGTACACATATACTATACTTCGTATATAT
ATATACGAGTACATATATATCAAGCCGCGCCAACACACGTACTTTGGAAG
TACGTACCCAAGTACATACAGTACTTCAAGTACGCCCAAGTAGTTAGGAG
AGTTTCTCACCAACCCGCTGGAGGTTAAGCACGCCTCTCGGCATGTCGAA
AACCTCCGCGTGTCCTGGGGCTCTTGGACTTCAGGCTGGTTGCAAGTTTG
AGGTGCTGGGGCCCTATTAACCCTTTTACCCCTGGGGTCCGTGTGGCATA
CATACAATAGTATGGTTTTAGTGTGTAAGTCCAATTCAGCAGGGGTAGAA
GGGTTAAGGCCAGCTTGGGGGGTCGGGGGTCCAGTGCATTGCTTGTTGTG
ACTTTCGGTGGCGGTTCCCGCACGCCCTGGAAAATTGCTAGTGGTGACCC
TCTTTGTGGCTGAAGACACGTTTGCCTACCCGTTCTTTCTGTGTCGCCTT
GGGTTCTTTTTCCTCTCTCGCCCGGCGAGTGAAGGTGAGTGAAAGGAAGG
GCTTCTGGGCATGGATCCCTGCACTCGCGTATGTAGAGTAGGGACATGTA
TTCTTTCCCACTCGCTTGTTTGTCTTCTTGCAAAAAACTAGGTGATTGCC
GTCTGTAGGGGCACATATTCTTTCCCACTCGCTTGTTTGTCTTGTTGCAA
AAAACTAGAGCAGGCGATTGCCGCCATGTTCAAGCATCTCAGAGTCTGGG
AATTGCCGACAGACGGGCGCGCTCGGCAGTTGCACCTCGCCTGACTCGGA
CATCCGTGTATTTTAAACATTTATCCCTGCTAAATTGGACTTGCACTAGT
TAAAACCCTATGGTCATACAGACCCCCGGGGTAAGAGGGCTAGCGATGAC
GAAGTACAGTACTTCGCAATAATACGTCCTTTGTGCTCCGCACTTTGCAC
GCAAGGGCGGACATCGGGGTGGCAGTCTCTCACCTTGCCTAACTCGGACA
TCCACGGTAATTATGACGATCACAAAGTAAATTACTCCGGAACAATATGT
ACTCTACTTTGTGCGTGCCTTGCCTAACTCGGACATCCACGGTAATTATG
ATGATCACAAAGTAAATTACTCCGTAACAATATGTACTCTACTTTGTGAG
CCACACTTTGTAGGCAAGGACGGGCATCGGCCCGGGGGCGGCAGCCTCGC
ACCTTGCCTAACTCGGACATCCATGGTAATTTGACGATCACGACGTGCAA
ATGTGCGCCACACTTTGCAGGCCAAGGACGGACATGGGGGCCGGGCAGCC
TGAGCGCCCTCGGACATTCCTCCTCCATGGGAGTTGAACGATCCCGAAAT
ACTTCGTAATAACAAGTCCTCTGTGCACCGTGGCACTTTACAGGCAAGGA
CGGCCCGGGACATCGGCCCGGGGGGGGCACCCTGAGCGCCTGGACCAGTA
CCTCGACTCGGTTAAAAACCTTACTCCTCCGTGGAGTTGCCGCCTGCGCC
GCCTTCCGCTTCACAAAGGCCGGGGTTGCGTGTGCCGTGGTGGCGGCCCT
TCGCCCGGTATGGGAGTGGGACTACTCCGACCACTCCGACCGCCACAGTG
CCAGTCACCATACCGACGCCGCTGCGGCCGCGAACTCGGCGGCGGCGGCC
GCCCGCGGCGCGGACTCCGTCTCATCGCCGGCCTGGTCGAGCCCAGGATC
TTCTACAACTTGTGGAGCTACCGGTACCCCCTCCTTTTCGGAGGCCAAGT
CGGCGAAGTCGCCGCTTCCACTTCCGCCGCAGCGACTACTCCATTCCGGC
CCGGGCAGCTCAGGCTCTGACGGGCGGGGAACCTTCAGGTTCTCGGTGGC
TCCCCCACCCCTCGGGTGGGGGCCGCCGAGCTACTGGCACGTAGTCACGA
CTACTACTACTAGCCTGAGTACGCCTTCTCGAACGCCCGCCTCGGCCGCG
ACTGCCTCGGGGGCCCGGCCCAATTGGGCCACCGAGTCAGGGCCGGAACC
TCTAGGCGCTCATGTGCTCCAACAAGGGCCCGGGCCGGGAGAGCCTGAGA
GCGCGGCCGGCCCGGGGCCCGGCGGCCCCCCCTGCATGACCCACGGTGGC
CCTGAGCCTCAGGCCCTGGCGGCGGACAGCACTGCCCCCGCTGCCACCGC
CGCCGCCACCGCCTCCCCTCAAGTGCCCGTGGCGGCGGCAGCGGCCCGAG
GGGAGCCCGGGCTCGAGCTCCACTGGCATCCTGGCGACCTGGATCACCAT
GGTAGAGCCTTACTCTGCGGGGTGGCCGCGACCCTGGTGGCCGTGGTCGC
CGCGCACCCGTGGGACGTGGCCCGCCGCCGTGCGGCCTGGAGGTCCCCAG
GGTCTGGCTCGGGCTCGTCACTGGCCCGGCGGCTCGGCCCAGGGCCCGGG
CCTGGGGCGGGGCGGTCACTGGCGGTCTCCTCCTCCTCCTCCTCCCCCTC
GTCCTCCTCCTCCTCCTCCTCCAGCTCAGGCCTACAATCAAAGCCCCTCA
GGATCTCCGAGTCGGGCTCGAGGCTGGAAGGCGTGCGCCCGGGCCGGCCT
GAACAGCCCGGGCCGCTTGGCCCTGTGCAGGGCCGGGGCCCGGCCCGGGA
CTGGTGGCTGCCTGAGTCACTGGCGCGACGACTCAGAGGGCTAGCCGGCG
GTCCTGGAGGTTTCCGAGTCGGCTCAGGCTTCTCTGGCTTCGGCGGGCAA
TTTGCCGCGCTTGGGGGCGCGGCGGCCAAGTCGGTGGTGGGGCTGGCGGT
AGCGTACGTGTGCGGCGCCGGCCTGGTGGGGGGGCTCGTGCATGCACGCC
TTGCCCAGGCGGGGGCGGCGCAGGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig13:2862784..2866609-

>mRNA_S-ischiensis_contig13.3127.1 ID=mRNA_S-ischiensis_contig13.3127.1|Name=mRNA_S-ischiensis_contig13.3127.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=3120bp|location=Sequence derived from alignment at S-ischiensis_contig13:2862784..2866609- (Schizocladia ischiensis KU_0333)
ATGGGGGGCGCCGGAGAGGCCCCGCTGGAGCTGAAGCACCTCCTGGCCGG
TGGGCTGGCGGGGGCGGCCACGGCTGTTCTCGCCAACCCGCTGGAGGTTG
TGCACGCCTCTCGGCACGTCGAACACTATGGGGGGCGCCGGAGAGGCCCC
GCTGGAGCTGAAGCACCTCCTGGCCGGTGGGCTGGCGGGGGCGGCCACGG
CTGTTCTCGCCAACCCGCTGGAGGTTGTGCACGCCTCTCGGCACGTCGAA
CACTGCAAGGACGGCCCGGGACATCGGCCCGGGGGGGGCACCCTGAGCGC
CTGGACCAGTACCTCGACTCGGTTAAAAACCTTACTCCTCCGTGGAGTTG
CCGCCTGCGCCGCCTTCCGCTTCACAAAGGCCGGGGTTGCGTGTGCCGTG
GTGGCGGCCCTTCGCCCGGTATGGGAGTGGGACTACTCCGACCACTCCGA
CCGCCACAGTGCCAGTCACCATACCGACGCCGCTGCGGCCGCGAACTCGG
CGGCGGCGGCCGCCCGCGGCGCGGACTCCGTCTCATCGCCGGCCTGGTCG
AGCCCAGGATCTTCTACAACTTGTGGAGCTACCGGTACCCCCTCCTTTTC
GGAGGCCAAGTCGGCGAAGTCGCCGCTTCCACTTCCGCCGCAGCGACTAC
TCCATTCCGGCCCGGGCAGCTCAGGCTCTGACGGGCGGGGAACCTTCAGG
TTCTCGGTGGCTCCCCCACCCCTCGGGTGGGGGCCGCCGAGCTACTGGCA
CGTAGTCACGACTACTACTACTAGCCTGAGTACGCCTTCTCGAACGCCCG
CCTCGGCCGCGACTGCCTCGGGGGCCCGGCCCAATTGGGCCACCGAGTCA
GGGCCGGAACCTCTAGGCGCTCATGTGCTCCAACAAGGGCCCGGGCCGGG
AGAGCCTGAGAGCGCGGCCGGCCCGGGGCCCGGCGGCCCCCCCTGCATGA
CCCACGGTGGCCCTGAGCCTCAGGCCCTGGCGGCGGACAGCACTGCCCCC
GCTGCCACCGCCGCCGCCACCGCCTCCCCTCAAGTGCCCGTGGCGGCGGC
AGCGGCCCGAGGGGAGCCCGGGCTCGAGCTCCACTGGCATCCTGGCGACC
TGGATCACCATGGTAGAGCCTTACTCTGCGGGGTGGCCGCGACCCTGGTG
GCCGTGGTCGCCGCGCACCCGTGGGACGTGGCCCGCCGCCGTGCGGCCTG
GAGGTCCCCAGGGTCTGGCTCGGGCTCGTCACTGGCCCGGCGGCTCGGCC
CAGGGCCCGGGCCTGGGGCGGGGCGGTCACTGGCGGTCTCCTCCTCCTCC
TCCTCCCCCTCGTCCTCCTCCTCCTCCTCCTCCAGCTCAGGCCTACAATC
AAAGCCCCTCAGGATCTCCGAGTCGGGCTCGAGGCTGGAAGGCGTGCGCC
CGGGCCGGCCTGAACAGCCCGGGCCGCTTGGCCCTGTGCAGGGCCGGGGC
CCGGCCCGGGACTGGTGGCTGCCTGAGTCACTGGCGCGACGACTCAGAGG
GCTAGCCGGCGGTCCTGGAGGTTTCCGAGTCGGCTCAGGCTTCTCTGGCT
TCGGCGGGCAATTTGCCGCGCTTGGGGGCGCGGCGGCCAAGTCGGTGGTG
GGGCTGGCGGTAGCGTACGTGTGCGGCGCCGGCCTGGTGGGGGGGCTCGT
GCATGCACGCCTTGCCCAGGCGGGGGCGGCGCAGGCCGCAAGGACGGCCC
GGGACATCGGCCCGGGGGGGGCACCCTGAGCGCCTGGACCAGTACCTCGA
CTCGGTTAAAAACCTTACTCCTCCGTGGAGTTGCCGCCTGCGCCGCCTTC
CGCTTCACAAAGGCCGGGGTTGCGTGTGCCGTGGTGGCGGCCCTTCGCCC
GGTATGGGAGTGGGACTACTCCGACCACTCCGACCGCCACAGTGCCAGTC
ACCATACCGACGCCGCTGCGGCCGCGAACTCGGCGGCGGCGGCCGCCCGC
GGCGCGGACTCCGTCTCATCGCCGGCCTGGTCGAGCCCAGGATCTTCTAC
AACTTGTGGAGCTACCGGTACCCCCTCCTTTTCGGAGGCCAAGTCGGCGA
AGTCGCCGCTTCCACTTCCGCCGCAGCGACTACTCCATTCCGGCCCGGGC
AGCTCAGGCTCTGACGGGCGGGGAACCTTCAGGTTCTCGGTGGCTCCCCC
ACCCCTCGGGTGGGGGCCGCCGAGCTACTGGCACGTAGTCACGACTACTA
CTACTAGCCTGAGTACGCCTTCTCGAACGCCCGCCTCGGCCGCGACTGCC
TCGGGGGCCCGGCCCAATTGGGCCACCGAGTCAGGGCCGGAACCTCTAGG
CGCTCATGTGCTCCAACAAGGGCCCGGGCCGGGAGAGCCTGAGAGCGCGG
CCGGCCCGGGGCCCGGCGGCCCCCCCTGCATGACCCACGGTGGCCCTGAG
CCTCAGGCCCTGGCGGCGGACAGCACTGCCCCCGCTGCCACCGCCGCCGC
CACCGCCTCCCCTCAAGTGCCCGTGGCGGCGGCAGCGGCCCGAGGGGAGC
CCGGGCTCGAGCTCCACTGGCATCCTGGCGACCTGGATCACCATGGTAGA
GCCTTACTCTGCGGGGTGGCCGCGACCCTGGTGGCCGTGGTCGCCGCGCA
CCCGTGGGACGTGGCCCGCCGCCGTGCGGCCTGGAGGTCCCCAGGGTCTG
GCTCGGGCTCGTCACTGGCCCGGCGGCTCGGCCCAGGGCCCGGGCCTGGG
GCGGGGCGGTCACTGGCGGTCTCCTCCTCCTCCTCCTCCCCCTCGTCCTC
CTCCTCCTCCTCCTCCAGCTCAGGCCTACAATCAAAGCCCCTCAGGATCT
CCGAGTCGGGCTCGAGGCTGGAAGGCGTGCGCCCGGGCCGGCCTGAACAG
CCCGGGCCGCTTGGCCCTGTGCAGGGCCGGGGCCCGGCCCGGGACTGGTG
GCTGCCTGAGTCACTGGCGCGACGACTCAGAGGGCTAGCCGGCGGTCCTG
GAGGTTTCCGAGTCGGCTCAGGCTTCTCTGGCTTCGGCGGGCAATTTGCC
GCGCTTGGGGGCGCGGCGGCCAAGTCGGTGGTGGGGCTGGCGGTAGCGTA
CGTGTGCGGCGCCGGCCTGGTGGGGGGGCTCGTGCATGCACGCCTTGCCC
AGGCGGGGGCGGCGCAGGCC
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