mRNA_S-ischiensis_contig13.3122.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.3122.1
Unique NamemRNA_S-ischiensis_contig13.3122.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.3122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:2794725..2795485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size762
Cds size756
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.5224638-UTR-S-ischiensis_contig13:2794724..27947291622815679.5224638-UTR-S-ischiensis_contig13:2794724..2794729Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2794725..2794729 +
1695739845.9205065-UTR-S-ischiensis_contig13:2794724..27947291695739845.9205065-UTR-S-ischiensis_contig13:2794724..2794729Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2794725..2794729 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.5382228-CDS-S-ischiensis_contig13:2794729..27954851622815679.5382228-CDS-S-ischiensis_contig13:2794729..2795485Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2794730..2795485 +
1695739845.9309478-CDS-S-ischiensis_contig13:2794729..27954851695739845.9309478-CDS-S-ischiensis_contig13:2794729..2795485Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2794730..2795485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.3122.1prot_S-ischiensis_contig13.3122.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 2794730..2795485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.3122.1

>prot_S-ischiensis_contig13.3122.1 ID=prot_S-ischiensis_contig13.3122.1|Name=mRNA_S-ischiensis_contig13.3122.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=252bp
MEEDETTAGGDGGPAGPSCSGAGAGPPPPPSCPSYYSSSASLPSSSTDPC
VSSTSNGGPRLPNPCPLPGSQASVGGGDGGGGRDGAVAAAAAQRRLAAHV
RADVAAEASLQFDAFLPGVVARVTAGSYAVTAPGGGTETAVAHAGGAAGT
ATDASAAAAAAASTSAAANAVDGPPSEEGGSGGGDGGGGGETAAGAGEDA
APSSSHGPLVLVPRPSRLFNPIWDRLPEVWTITPSWGGVSAETREDGAAG
TA
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mRNA from alignment at S-ischiensis_contig13:2794725..2795485+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.3122.1 ID=mRNA_S-ischiensis_contig13.3122.1|Name=mRNA_S-ischiensis_contig13.3122.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=761bp|location=Sequence derived from alignment at S-ischiensis_contig13:2794725..2795485+ (Schizocladia ischiensis KU_0333)
ATGCGATGGAGGAGGACGAGACCACGGCGGGGGGGGACGGGGGGCCTGCA
GGCCCCAGCTGTTCCGGGGCCGGTGCAGGTCCGCCGCCACCCCCCTCCTG
CCCCTCTTACTATTCTTCCTCGGCATCGCTGCCGTCGTCGTCGACGGACC
CTTGTGTTTCGTCGACTTCCAACGGGGGGCCACGCCTCCCTAATCCTTGC
CCGCTCCCTGGGTCCCAGGCGTCAGTCGGTGGCGGTGATGGTGGCGGTGG
CCGGGACGGCGCGGTGGCCGCCGCCGCCGCGCAGCGGCGTCTGGCGGCGC
ACGTGCGCGCGGATGTGGCGGCCGAGGCCTCGCTGCAGTTCGACGCCTTC
CTGCCCGGGGTCGTGGCCCGTGTAACTGCCGGCAGCTACGCCGTAACCGC
CCCCGGTGGCGGAACCGAAACCGCTGTTGCTCACGCGGGAGGAGCCGCTG
GAACAGCGACCGACGCCTCTGCAGCCGCCGCCGCCGCCGCCTCCACGTCC
GCCGCCGCCAATGCCGTCGACGGCCCTCCTTCTGAGGAGGGCGGTAGTGG
CGGCGGCGACGGAGGCGGCGGGGGCGAAACTGCTGCCGGAGCAGGGGAGG
ATGCAGCCCCATCATCGTCGCACGGGCCGCTGGTGCTGGTGCCCCGGCCT
TCGCGCCTTTTCAACCCGATCTGGGACCGTCTCCCCGAGGTGTGGACGAT
CACGCCCTCCTGGGGGGGCGTTTCTGCGGAGACGCGGGAAGACGGTGCCG
CGGGGACGGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig13:2794725..2795485+

>mRNA_S-ischiensis_contig13.3122.1 ID=mRNA_S-ischiensis_contig13.3122.1|Name=mRNA_S-ischiensis_contig13.3122.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1512bp|location=Sequence derived from alignment at S-ischiensis_contig13:2794725..2795485+ (Schizocladia ischiensis KU_0333)
ATGGAGGAGGACGAGACCACGGCGGGGGGGGACGGGGGGCCTGCAGGCCC
CAGCTGTTCCGGGGCCGGTGCAGGTCCGCCGCCACCCCCCTCCTGCCCCT
CTTACTATTCTTCCTCGGCATCGCTGCCGTCGTCGTCGACGGACCCTTGT
GTTTCGTCGACTTCCAACGGGGGGCCACGCCTCCCTAATCCTTGCCCGCT
CCCTGGGTCCCAGGCGTCAGTCGGTGGCGGTGATGGTGGCGGTGGCCGGG
ACGGCGCGGTGGCCGCCGCCGCCGCGCAGCGGCGTCTGGCGGCGCACGTG
CGCGCGGATGTGGCGGCCGAGGCCTCGCTGCAGTTCGACGCCTTCCTGCC
CGGGGTCGTGGCCCGTGTAACTGCCGGCAGCTACGCCGTAACCGCCCCCG
GTGGCGGAACCGAAACCGCTGTTGCTCACGCGGGAGGAGCCGCTGGAACA
GCGACCGACGCCTCTGCAGCCGCCGCCGCCGCCGCCTCCACGTCCGCCGC
CGCCAATGCCGTCGACGGCCCTCCTTCTGAGGAGGGCGGTAGTGGCGGCG
GCGACGGAGGCGGCGGGGGCGAAACTGCTGCCGGAGCAGGGGAGGATGCA
GCCCCATCATCGTCGCACGGGCCGCTGGTGCTGGTGCCCCGGCCTTCGCG
CCTTTTCAACCCGATCTGGGACCGTCTCCCCGAGGTGTGGACGATCACGC
CCTCCTGGGGGGGCGTTTCTGCGGAGACGCGGGAAGACGGTGCCGCGGGG
ACGGCGATGGAGGAGGACGAGACCACGGCGGGGGGGGACGGGGGGCCTGC
AGGCCCCAGCTGTTCCGGGGCCGGTGCAGGTCCGCCGCCACCCCCCTCCT
GCCCCTCTTACTATTCTTCCTCGGCATCGCTGCCGTCGTCGTCGACGGAC
CCTTGTGTTTCGTCGACTTCCAACGGGGGGCCACGCCTCCCTAATCCTTG
CCCGCTCCCTGGGTCCCAGGCGTCAGTCGGTGGCGGTGATGGTGGCGGTG
GCCGGGACGGCGCGGTGGCCGCCGCCGCCGCGCAGCGGCGTCTGGCGGCG
CACGTGCGCGCGGATGTGGCGGCCGAGGCCTCGCTGCAGTTCGACGCCTT
CCTGCCCGGGGTCGTGGCCCGTGTAACTGCCGGCAGCTACGCCGTAACCG
CCCCCGGTGGCGGAACCGAAACCGCTGTTGCTCACGCGGGAGGAGCCGCT
GGAACAGCGACCGACGCCTCTGCAGCCGCCGCCGCCGCCGCCTCCACGTC
CGCCGCCGCCAATGCCGTCGACGGCCCTCCTTCTGAGGAGGGCGGTAGTG
GCGGCGGCGACGGAGGCGGCGGGGGCGAAACTGCTGCCGGAGCAGGGGAG
GATGCAGCCCCATCATCGTCGCACGGGCCGCTGGTGCTGGTGCCCCGGCC
TTCGCGCCTTTTCAACCCGATCTGGGACCGTCTCCCCGAGGTGTGGACGA
TCACGCCCTCCTGGGGGGGCGTTTCTGCGGAGACGCGGGAAGACGGTGCC
GCGGGGACGGCG
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