mRNA_S-ischiensis_contig13.3120.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.3120.1
Unique NamemRNA_S-ischiensis_contig13.3120.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig13.3120.1 vs. uniprot
Match: D7FH97_ECTSI (Similar to chromosome fragility associated gene 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH97_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.380e-22
Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = 3
Query:   45 EDDNRLPNLAMLCGPSGVGKTSLVYGCAEALGYSVIEVNPSQLRSGAAVRRMFGEAAQSH 224
            ++D RL N+AMLCGP GVGKTS VYGCA+ALGY VIEVNPSQLRSGAA+RR+FGEA QSH
Sbjct:  869 DEDARLCNMAMLCGPPGVGKTSAVYGCAKALGYEVIEVNPSQLRSGAAIRRLFGEATQSH 928          
BLAST of mRNA_S-ischiensis_contig13.3120.1 vs. uniprot
Match: UPI0014585F3B (ATPase family AAA domain-containing protein 5-like isoform X1 n=2 Tax=Pecten maximus TaxID=6579 RepID=UPI0014585F3B)

HSP 1 Score: 69.7 bits (169), Expect = 1.610e-11
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 3
Query:   48 DDNRLPNLAMLCGPSGVGKTSLVYGCAEALGYSVIEVNPSQLRSGAAVRRMFGEAAQSHCMACG 239
            +D+RL N AMLCGPSG+GKT+ VYG A+ LG+ V EVN S  R+G  +     EA QSH ++ G
Sbjct: 1073 EDDRLCNTAMLCGPSGIGKTATVYGLAQELGFKVFEVNASSTRNGKRILAQLQEATQSHQVSRG 1136          
BLAST of mRNA_S-ischiensis_contig13.3120.1 vs. uniprot
Match: A0A8J1UL85_OWEFU (Ofus.G161281 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UL85_OWEFU)

HSP 1 Score: 69.7 bits (169), Expect = 1.610e-11
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 3
Query:   18 WSDGAGGSGEDDNRLPNLAMLCGPSGVGKTSLVYGCAEALGYSVIEVNPSQLRSGAAVRRMFGEAAQSH 224
            +S+G+ G  E+D+ L N  ++CGP G+GKTS+VY  A+ LGY V EVN S  R+G  V     EA QSH
Sbjct: 1089 YSEGSDGEEEEDDGLCNTTVICGPHGIGKTSVVYALAQDLGYKVFEVNASSCRNGKRVMSQLQEATQSH 1157          
BLAST of mRNA_S-ischiensis_contig13.3120.1 vs. uniprot
Match: A0A6P4YIE8_BRABE (ATPase family AAA domain-containing protein 5-like isoform X1 n=2 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YIE8_BRABE)

HSP 1 Score: 69.3 bits (168), Expect = 2.210e-11
Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 3
Query:   48 DDNRLPNLAMLCGPSGVGKTSLVYGCAEALGYSVIEVNPSQLRSGAAVRRMFGEAAQSHCMACGAKGANASSTDENPADPADVQAGSLRGLLRGSWA 338
            +++ L N  +L GP+G+GKTS VY CA+ LGY V EVN + LRSG  V     EA QSH ++  A+   A+S  +    P  V+ G+ +  +  S+A
Sbjct: 1259 EEDGLCNTMLLLGPTGIGKTSAVYACAQELGYKVFEVNAASLRSGKQVLTQLREATQSHQVSKQAQTGGAASLFKTSLTPQKVKPGANKASMHSSFA 1355          
BLAST of mRNA_S-ischiensis_contig13.3120.1 vs. uniprot
Match: C3Y9A3_BRAFL (ATPase_AAA_core domain-containing protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Y9A3_BRAFL)

HSP 1 Score: 68.6 bits (166), Expect = 4.110e-11
Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = 3
Query:   45 EDDNRLPNLAMLCGPSGVGKTSLVYGCAEALGYSVIEVNPSQLRSGAAVRRMFGEAAQSHCMACGAKGANASSTDENPADPADVQAGSLRGLLRGSWA 338
            ++++ L N  ++ GP+G+GKTS VY CA+ LGY V EVN + LRSG  V     EA QSH ++  A+   A+S  +    P  V+ G  +G +  S+A
Sbjct: 1266 DEEDGLCNTMLVLGPTGIGKTSAVYACAQELGYKVFEVNAASLRSGKQVLTQLREATQSHQVSKQAQTGGAASLFKTSLTPQKVKPGVNKGPVPSSFA 1363          
BLAST of mRNA_S-ischiensis_contig13.3120.1 vs. uniprot
Match: UPI0016018679 (ATPase family AAA domain-containing protein 5-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016018679)

HSP 1 Score: 67.8 bits (164), Expect = 7.550e-11
Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 3
Query:   48 DDNRLPNLAMLCGPSGVGKTSLVYGCAEALGYSVIEVNPSQLRSGAAVRRMFGEAAQSHCMACGAKGANASSTDENPADPADVQAGSLRGLLRGSWA 338
            +++ L N  ++ GP+G+GKTS VY CA+ LGY V EVN + LRSG  V     EA QSH ++  A+   A+S  +    P  V+ G  +G +  S+A
Sbjct:  614 EEDGLCNTMLVLGPTGIGKTSAVYACAQELGYKVFEVNAASLRSGKQVLTQLREATQSHQVSKQAQTGGAASLFKTSLTPQKVKPGVNKGPVPSSFA 710          
BLAST of mRNA_S-ischiensis_contig13.3120.1 vs. uniprot
Match: A0A8K0AI49_BRALA (ATAD5 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0AI49_BRALA)

HSP 1 Score: 67.8 bits (164), Expect = 7.660e-11
Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 3
Query:   48 DDNRLPNLAMLCGPSGVGKTSLVYGCAEALGYSVIEVNPSQLRSGAAVRRMFGEAAQSHCMACGAKGANASSTDENPADPADVQAGSLRGLLRGSWA 338
            +++ L N  ++ GP+G+GKTS VY CA+ LGY V EVN + LRSG  V     EA QSH ++  A+   A+S  +    P  V+ G+ +  L  S+A
Sbjct: 1280 EEDGLCNTMLVLGPTGIGKTSAVYACAQELGYKVFEVNAASLRSGKQVLTQLREATQSHQVSKQAQTGGAASLFKTSLTPQKVKPGANKAPLPSSFA 1376          
BLAST of mRNA_S-ischiensis_contig13.3120.1 vs. uniprot
Match: A0A210QA61_MIZYE (ATPase family AAA domain-containing protein 5 n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210QA61_MIZYE)

HSP 1 Score: 67.0 bits (162), Expect = 1.420e-10
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 3
Query:   48 DDNRLPNLAMLCGPSGVGKTSLVYGCAEALGYSVIEVNPSQLRSGAAVRRMFGEAAQSHCMACG 239
            +++RL N AMLCGPSG+GKT+ VYG A  LG+ V EVN S  R+G  +     EA QSH ++ G
Sbjct: 1071 EEDRLCNTAMLCGPSGIGKTASVYGLAHELGFKVFEVNASSTRNGKRILAQLQEATQSHQVSRG 1134          
BLAST of mRNA_S-ischiensis_contig13.3120.1 vs. uniprot
Match: UPI001BB29E64 (ATPase family AAA domain-containing protein 5-like isoform X1 n=3 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB29E64)

HSP 1 Score: 67.0 bits (162), Expect = 1.420e-10
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 3
Query:   18 WSDGAGGSGEDDNRLPNLAMLCGPSGVGKTSLVYGCAEALGYSVIEVNPSQLRSGAAVRRMFGEAAQSHCMA 233
            WS+G     E+++ L N  +L GP GVGKTSLVY CA+ LG+ V EVN S  R+G  +    GE  QSH +A
Sbjct: 1111 WSEGE--DSEEEDGLCNTILLSGPHGVGKTSLVYACAQELGFEVFEVNASSRRNGRQILAELGEGTQSHQVA 1180          
BLAST of mRNA_S-ischiensis_contig13.3120.1 vs. uniprot
Match: A0A7S4UII5_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UII5_GUITH)

HSP 1 Score: 63.2 bits (152), Expect = 5.390e-10
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 3
Query:   48 DDNRLPNLAMLCGPSGVGKTSLVYGCAEALGYSVIEVNPSQLRSGAAVRRMFGEAAQSHCMACGAKGANASSTDEN 275
            D N   N  +L GPSG GKT+ +Y C E L   VIE+NPS  R+G  + +M GEA +S+ +  GA   +A S+ E+
Sbjct:   67 DSNAFSNALVLVGPSGSGKTASLYACCEELRLRVIEINPSDQRTGKNILQMVGEATRSYLVRRGASAIDAKSSQES 142          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.3120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH97_ECTSI1.380e-2280.00Similar to chromosome fragility associated gene 1 ... [more]
UPI0014585F3B1.610e-1153.13ATPase family AAA domain-containing protein 5-like... [more]
A0A8J1UL85_OWEFU1.610e-1149.28Ofus.G161281 protein n=1 Tax=Owenia fusiformis Tax... [more]
A0A6P4YIE8_BRABE2.210e-1140.21ATPase family AAA domain-containing protein 5-like... [more]
C3Y9A3_BRAFL4.110e-1139.80ATPase_AAA_core domain-containing protein n=1 Tax=... [more]
UPI00160186797.550e-1140.21ATPase family AAA domain-containing protein 5-like... [more]
A0A8K0AI49_BRALA7.660e-1140.21ATAD5 protein n=1 Tax=Branchiostoma lanceolatum Ta... [more]
A0A210QA61_MIZYE1.420e-1051.56ATPase family AAA domain-containing protein 5 n=2 ... [more]
UPI001BB29E641.420e-1048.61ATPase family AAA domain-containing protein 5-like... [more]
A0A7S4UII5_GUITH5.390e-1043.42Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:2793356..2794002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size346
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.3120.1prot_S-ischiensis_contig13.3120.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 2793363..2794002 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.7637758-UTR-S-ischiensis_contig13:2793355..27933621622815676.7637758-UTR-S-ischiensis_contig13:2793355..2793362Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2793356..2793362 +
1695739844.7750585-UTR-S-ischiensis_contig13:2793355..27933621695739844.7750585-UTR-S-ischiensis_contig13:2793355..2793362Schizocladia ischiensis KU_0333UTRS-ischiensis_contig13 2793356..2793362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.7743278-CDS-S-ischiensis_contig13:2793362..27934761622815676.7743278-CDS-S-ischiensis_contig13:2793362..2793476Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2793363..2793476 +
1695739844.7842398-CDS-S-ischiensis_contig13:2793362..27934761695739844.7842398-CDS-S-ischiensis_contig13:2793362..2793476Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2793363..2793476 +
1622815676.784116-CDS-S-ischiensis_contig13:2793777..27940021622815676.784116-CDS-S-ischiensis_contig13:2793777..2794002Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2793778..2794002 +
1695739844.795166-CDS-S-ischiensis_contig13:2793777..27940021695739844.795166-CDS-S-ischiensis_contig13:2793777..2794002Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2793778..2794002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.3120.1

>prot_S-ischiensis_contig13.3120.1 ID=prot_S-ischiensis_contig13.3120.1|Name=mRNA_S-ischiensis_contig13.3120.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=113bp
MGPVVRRRGRERRGRQSAAQPGHALRAVRRGQDQPGVRLRRSPRLLRNRG
EPVAAPLRGRREAHVRRGRPVPLHGLRRQGRQRLLHRREPCRPRRRAGWE
PPRPPAGQLGPR*
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mRNA from alignment at S-ischiensis_contig13:2793356..2794002+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.3120.1 ID=mRNA_S-ischiensis_contig13.3120.1|Name=mRNA_S-ischiensis_contig13.3120.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=647bp|location=Sequence derived from alignment at S-ischiensis_contig13:2793356..2794002+ (Schizocladia ischiensis KU_0333)
AGTGGGAATGGGACCTGTGGTCAGACGGCGCGGGCGGGAGCGGAGAGGAC GACAATCGGCTGCCCAACCTGGCCATGCTCTGCGGGCCGTCCGGCGTGGG CAAGACCAGCCTGGTGTACGGGTGCGTGTGTGCGCGTCTGTCTGCGTGCG CGAATAGGTATTCGTGCGGGTGTGTAGACCGCTCGACTTTTGCGTCATCA GACATGCCTGCGCGCGTGCATGCCTGCAGACGTGCATATGTGTCTGCCTG TGCGCGTGCATGCATGCGCGCCGCACTGGTCGCATTGGTGTGTGCGTATT TTATGATGTATTTGTGCGTGCGTGCATGCATGCGGTGGCAGCACGTGAGC GAGCCGCTCAAGGCTGAACCCCTCCCCCCCCCCCGCCCCCTCCCCCCCAA CCCTCCACCCGCCTGCCCACAGCTGCGCCGAAGCCCTAGGCTACTCCGTA ATCGAGGTGAACCCGTCGCAGCTCCGCTCCGGGGCCGCCGTGAGGCGCAT GTTCGGCGAGGCCGCCCAGTCCCACTGCATGGCCTGCGGCGCCAAGGGCG CCAACGCCTCCTCCACCGACGAGAACCCTGCCGACCCCGCAGACGTGCAG GCTGGGAGCCTCCGCGGCCTCCTGCGGGGCAGCTGGGCCCACGGTAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig13:2793356..2794002+

>mRNA_S-ischiensis_contig13.3120.1 ID=mRNA_S-ischiensis_contig13.3120.1|Name=mRNA_S-ischiensis_contig13.3120.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=678bp|location=Sequence derived from alignment at S-ischiensis_contig13:2793356..2794002+ (Schizocladia ischiensis KU_0333)
ATGGGACCTGTGGTCAGACGGCGCGGGCGGGAGCGGAGAGGACGACAATC
GGCTGCCCAACCTGGCCATGCTCTGCGGGCCGTCCGGCGTGGGCAAGACC
AGCCTGGTGTACGGATGGGACCTGTGGTCAGACGGCGCGGGCGGGAGCGG
AGAGGACGACAATCGGCTGCCCAACCTGGCCATGCTCTGCGGGCCGTCCG
GCGTGGGCAAGACCAGCCTGGTGTACGGCTGCGCCGAAGCCCTAGGCTAC
TCCGTAATCGAGGTGAACCCGTCGCAGCTCCGCTCCGGGGCCGCCGTGAG
GCGCATGTTCGGCGAGGCCGCCCAGTCCCACTGCATGGCCTGCGGCGCCA
AGGGCGCCAACGCCTCCTCCACCGACGAGAACCCTGCCGACCCCGCAGAC
GTGCAGGCTGGGAGCCTCCGCGGCCTCCTGCGGGGCAGCTGGGCCCACGG
TAGCTGCGCCGAAGCCCTAGGCTACTCCGTAATCGAGGTGAACCCGTCGC
AGCTCCGCTCCGGGGCCGCCGTGAGGCGCATGTTCGGCGAGGCCGCCCAG
TCCCACTGCATGGCCTGCGGCGCCAAGGGCGCCAACGCCTCCTCCACCGA
CGAGAACCCTGCCGACCCCGCAGACGTGCAGGCTGGGAGCCTCCGCGGCC
TCCTGCGGGGCAGCTGGGCCCACGGTAG
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