mRNA_S-ischiensis_contig13.3120.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig13.3120.1 vs. uniprot
Match: D7FH97_ECTSI (Similar to chromosome fragility associated gene 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH97_ECTSI) HSP 1 Score: 101 bits (251), Expect = 1.380e-22 Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = 3
Query: 45 EDDNRLPNLAMLCGPSGVGKTSLVYGCAEALGYSVIEVNPSQLRSGAAVRRMFGEAAQSH 224
++D RL N+AMLCGP GVGKTS VYGCA+ALGY VIEVNPSQLRSGAA+RR+FGEA QSH
Sbjct: 869 DEDARLCNMAMLCGPPGVGKTSAVYGCAKALGYEVIEVNPSQLRSGAAIRRLFGEATQSH 928
BLAST of mRNA_S-ischiensis_contig13.3120.1 vs. uniprot
Match: UPI0014585F3B (ATPase family AAA domain-containing protein 5-like isoform X1 n=2 Tax=Pecten maximus TaxID=6579 RepID=UPI0014585F3B) HSP 1 Score: 69.7 bits (169), Expect = 1.610e-11 Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 3
Query: 48 DDNRLPNLAMLCGPSGVGKTSLVYGCAEALGYSVIEVNPSQLRSGAAVRRMFGEAAQSHCMACG 239
+D+RL N AMLCGPSG+GKT+ VYG A+ LG+ V EVN S R+G + EA QSH ++ G
Sbjct: 1073 EDDRLCNTAMLCGPSGIGKTATVYGLAQELGFKVFEVNASSTRNGKRILAQLQEATQSHQVSRG 1136
BLAST of mRNA_S-ischiensis_contig13.3120.1 vs. uniprot
Match: A0A8J1UL85_OWEFU (Ofus.G161281 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UL85_OWEFU) HSP 1 Score: 69.7 bits (169), Expect = 1.610e-11 Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 3
Query: 18 WSDGAGGSGEDDNRLPNLAMLCGPSGVGKTSLVYGCAEALGYSVIEVNPSQLRSGAAVRRMFGEAAQSH 224
+S+G+ G E+D+ L N ++CGP G+GKTS+VY A+ LGY V EVN S R+G V EA QSH
Sbjct: 1089 YSEGSDGEEEEDDGLCNTTVICGPHGIGKTSVVYALAQDLGYKVFEVNASSCRNGKRVMSQLQEATQSH 1157
BLAST of mRNA_S-ischiensis_contig13.3120.1 vs. uniprot
Match: A0A6P4YIE8_BRABE (ATPase family AAA domain-containing protein 5-like isoform X1 n=2 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YIE8_BRABE) HSP 1 Score: 69.3 bits (168), Expect = 2.210e-11 Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 3
Query: 48 DDNRLPNLAMLCGPSGVGKTSLVYGCAEALGYSVIEVNPSQLRSGAAVRRMFGEAAQSHCMACGAKGANASSTDENPADPADVQAGSLRGLLRGSWA 338
+++ L N +L GP+G+GKTS VY CA+ LGY V EVN + LRSG V EA QSH ++ A+ A+S + P V+ G+ + + S+A
Sbjct: 1259 EEDGLCNTMLLLGPTGIGKTSAVYACAQELGYKVFEVNAASLRSGKQVLTQLREATQSHQVSKQAQTGGAASLFKTSLTPQKVKPGANKASMHSSFA 1355
BLAST of mRNA_S-ischiensis_contig13.3120.1 vs. uniprot
Match: C3Y9A3_BRAFL (ATPase_AAA_core domain-containing protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Y9A3_BRAFL) HSP 1 Score: 68.6 bits (166), Expect = 4.110e-11 Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = 3
Query: 45 EDDNRLPNLAMLCGPSGVGKTSLVYGCAEALGYSVIEVNPSQLRSGAAVRRMFGEAAQSHCMACGAKGANASSTDENPADPADVQAGSLRGLLRGSWA 338
++++ L N ++ GP+G+GKTS VY CA+ LGY V EVN + LRSG V EA QSH ++ A+ A+S + P V+ G +G + S+A
Sbjct: 1266 DEEDGLCNTMLVLGPTGIGKTSAVYACAQELGYKVFEVNAASLRSGKQVLTQLREATQSHQVSKQAQTGGAASLFKTSLTPQKVKPGVNKGPVPSSFA 1363
BLAST of mRNA_S-ischiensis_contig13.3120.1 vs. uniprot
Match: UPI0016018679 (ATPase family AAA domain-containing protein 5-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016018679) HSP 1 Score: 67.8 bits (164), Expect = 7.550e-11 Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 3
Query: 48 DDNRLPNLAMLCGPSGVGKTSLVYGCAEALGYSVIEVNPSQLRSGAAVRRMFGEAAQSHCMACGAKGANASSTDENPADPADVQAGSLRGLLRGSWA 338
+++ L N ++ GP+G+GKTS VY CA+ LGY V EVN + LRSG V EA QSH ++ A+ A+S + P V+ G +G + S+A
Sbjct: 614 EEDGLCNTMLVLGPTGIGKTSAVYACAQELGYKVFEVNAASLRSGKQVLTQLREATQSHQVSKQAQTGGAASLFKTSLTPQKVKPGVNKGPVPSSFA 710
BLAST of mRNA_S-ischiensis_contig13.3120.1 vs. uniprot
Match: A0A8K0AI49_BRALA (ATAD5 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0AI49_BRALA) HSP 1 Score: 67.8 bits (164), Expect = 7.660e-11 Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 3
Query: 48 DDNRLPNLAMLCGPSGVGKTSLVYGCAEALGYSVIEVNPSQLRSGAAVRRMFGEAAQSHCMACGAKGANASSTDENPADPADVQAGSLRGLLRGSWA 338
+++ L N ++ GP+G+GKTS VY CA+ LGY V EVN + LRSG V EA QSH ++ A+ A+S + P V+ G+ + L S+A
Sbjct: 1280 EEDGLCNTMLVLGPTGIGKTSAVYACAQELGYKVFEVNAASLRSGKQVLTQLREATQSHQVSKQAQTGGAASLFKTSLTPQKVKPGANKAPLPSSFA 1376
BLAST of mRNA_S-ischiensis_contig13.3120.1 vs. uniprot
Match: A0A210QA61_MIZYE (ATPase family AAA domain-containing protein 5 n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210QA61_MIZYE) HSP 1 Score: 67.0 bits (162), Expect = 1.420e-10 Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 3
Query: 48 DDNRLPNLAMLCGPSGVGKTSLVYGCAEALGYSVIEVNPSQLRSGAAVRRMFGEAAQSHCMACG 239
+++RL N AMLCGPSG+GKT+ VYG A LG+ V EVN S R+G + EA QSH ++ G
Sbjct: 1071 EEDRLCNTAMLCGPSGIGKTASVYGLAHELGFKVFEVNASSTRNGKRILAQLQEATQSHQVSRG 1134
BLAST of mRNA_S-ischiensis_contig13.3120.1 vs. uniprot
Match: UPI001BB29E64 (ATPase family AAA domain-containing protein 5-like isoform X1 n=3 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB29E64) HSP 1 Score: 67.0 bits (162), Expect = 1.420e-10 Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 3
Query: 18 WSDGAGGSGEDDNRLPNLAMLCGPSGVGKTSLVYGCAEALGYSVIEVNPSQLRSGAAVRRMFGEAAQSHCMA 233
WS+G E+++ L N +L GP GVGKTSLVY CA+ LG+ V EVN S R+G + GE QSH +A
Sbjct: 1111 WSEGE--DSEEEDGLCNTILLSGPHGVGKTSLVYACAQELGFEVFEVNASSRRNGRQILAELGEGTQSHQVA 1180
BLAST of mRNA_S-ischiensis_contig13.3120.1 vs. uniprot
Match: A0A7S4UII5_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UII5_GUITH) HSP 1 Score: 63.2 bits (152), Expect = 5.390e-10 Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 3
Query: 48 DDNRLPNLAMLCGPSGVGKTSLVYGCAEALGYSVIEVNPSQLRSGAAVRRMFGEAAQSHCMACGAKGANASSTDEN 275
D N N +L GPSG GKT+ +Y C E L VIE+NPS R+G + +M GEA +S+ + GA +A S+ E+
Sbjct: 67 DSNAFSNALVLVGPSGSGKTASLYACCEELRLRVIEINPSDQRTGKNILQMVGEATRSYLVRRGASAIDAKSSQES 142 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.3120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig13.3120.1 >prot_S-ischiensis_contig13.3120.1 ID=prot_S-ischiensis_contig13.3120.1|Name=mRNA_S-ischiensis_contig13.3120.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=113bp MGPVVRRRGRERRGRQSAAQPGHALRAVRRGQDQPGVRLRRSPRLLRNRGback to top mRNA from alignment at S-ischiensis_contig13:2793356..2794002+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig13.3120.1 ID=mRNA_S-ischiensis_contig13.3120.1|Name=mRNA_S-ischiensis_contig13.3120.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=647bp|location=Sequence derived from alignment at S-ischiensis_contig13:2793356..2794002+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig13:2793356..2794002+ >mRNA_S-ischiensis_contig13.3120.1 ID=mRNA_S-ischiensis_contig13.3120.1|Name=mRNA_S-ischiensis_contig13.3120.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=678bp|location=Sequence derived from alignment at S-ischiensis_contig13:2793356..2794002+ (Schizocladia ischiensis KU_0333)back to top |