mRNA_S-ischiensis_contig13.3119.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig13.3119.1
Unique NamemRNA_S-ischiensis_contig13.3119.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig13.3119.1 vs. uniprot
Match: A0A6H5KGC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGC2_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.650e-14
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   70 ARAKRRDAPADALWTEVYRPRSPEEVCGNAPVVQSFARWLGEWKELR 210
            ARA+R +A ADALWTEVYRPRSP+EVCGNA  + + ++WLGEWKE R
Sbjct:  921 ARARRAEADADALWTEVYRPRSPDEVCGNAMQMAALSKWLGEWKEKR 967
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BLAST of mRNA_S-ischiensis_contig13.3119.1 vs. uniprot
Match: D7FH97_ECTSI (Similar to chromosome fragility associated gene 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH97_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 2.680e-14
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   70 ARAKRRDAPADALWTEVYRPRSPEEVCGNAPVVQSFARWLGEWKELR 210
            ARA+R +A ADALWTEVYRPRSP+EVCGNA  + + ++WLGEWKE R
Sbjct:  787 ARARRAEADADALWTEVYRPRSPDEVCGNAMQMAALSKWLGEWKEKR 833
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig13.3119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KGC2_9PHAE2.650e-1470.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH97_ECTSI2.680e-1470.21Similar to chromosome fragility associated gene 1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig13contigS-ischiensis_contig13:2792848..2793058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue1.5e-11
Seed eggNOG ortholog2880.D7FH97
KEGG koko:K10754
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
EggNOG free text desc.DNA clamp loader activity
EggNOG OGsCOG5275@1,KOG1968@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size211
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815696.2609208-CDS-S-ischiensis_contig13:2792847..27930571622815696.2609208-CDS-S-ischiensis_contig13:2792847..2793057Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2792848..2793057 +
1695739858.121522-CDS-S-ischiensis_contig13:2792847..27930571695739858.121522-CDS-S-ischiensis_contig13:2792847..2793057Schizocladia ischiensis KU_0333CDSS-ischiensis_contig13 2792848..2793057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig13.3119.1prot_S-ischiensis_contig13.3119.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig13 2792848..2793057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig13.3119.1

>prot_S-ischiensis_contig13.3119.1 ID=prot_S-ischiensis_contig13.3119.1|Name=mRNA_S-ischiensis_contig13.3119.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=70bp
EAVVLLASTRGLSREKAARALAAARAKRRDAPADALWTEVYRPRSPEEVC
GNAPVVQSFARWLGEWKELR
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mRNA from alignment at S-ischiensis_contig13:2792848..2793058+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig13.3119.1 ID=mRNA_S-ischiensis_contig13.3119.1|Name=mRNA_S-ischiensis_contig13.3119.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=211bp|location=Sequence derived from alignment at S-ischiensis_contig13:2792848..2793058+ (Schizocladia ischiensis KU_0333)
GAGGCGGTGGTTCTGCTGGCGTCCACACGAGGCCTTTCCAGGGAGAAGGC
CGCCCGGGCGTTGGCGGCAGCTAGGGCGAAGAGGAGGGATGCCCCTGCGG
ATGCCCTCTGGACGGAGGTGTACCGGCCCCGGTCGCCGGAGGAGGTGTGC
GGGAACGCGCCGGTGGTGCAGTCGTTCGCGCGGTGGCTGGGGGAGTGGAA
GGAGCTCCGGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig13:2792848..2793058+

>mRNA_S-ischiensis_contig13.3119.1 ID=mRNA_S-ischiensis_contig13.3119.1|Name=mRNA_S-ischiensis_contig13.3119.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=420bp|location=Sequence derived from alignment at S-ischiensis_contig13:2792848..2793058+ (Schizocladia ischiensis KU_0333)
GAGGCGGTGGTTCTGCTGGCGTCCACACGAGGCCTTTCCAGGGAGAAGGC
CGCCCGGGCGTTGGCGGCAGCTAGGGCGAAGAGGAGGGATGCCCCTGCGG
ATGCCCTCTGGACGGAGGTGTACCGGCCCCGGTCGCCGGAGGAGGTGTGC
GGGAACGCGCCGGTGGTGCAGTCGTTCGCGCGGTGGCTGGGGGAGTGGAA
GGAGCTCCGGGAGGCGGTGGTTCTGCTGGCGTCCACACGAGGCCTTTCCA
GGGAGAAGGCCGCCCGGGCGTTGGCGGCAGCTAGGGCGAAGAGGAGGGAT
GCCCCTGCGGATGCCCTCTGGACGGAGGTGTACCGGCCCCGGTCGCCGGA
GGAGGTGTGCGGGAACGCGCCGGTGGTGCAGTCGTTCGCGCGGTGGCTGG
GGGAGTGGAAGGAGCTCCGG
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